Rh1AG347700

Poly(A) RNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001926
Physical Location & Seq
Forward (+)
58378552 .. 58383249
4698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG347700.1

Sequence Viewer

Length: 1563 bp
ATGGAGAATACTCTCAGGGAGATAATACGTGTGCTTGAACCCTTGCCCACTGATCGAGAAACACGATGCCAAATTCTTCGGGAGTTACAAGGAGCTGTTGAGTCTGTAGAAAGCTTAAGAGGTGCAACTGTGGAGCCATTTGGATCATTTGTCTCAGAACTCTTTACTCGCTGGGGAGACTTGGATGTTTCAATTGAGTTCTCAAAAGGCGCATATATTTCTTCTTATGGAAGAAAGCACACACAAGATGTACTAAAAGATTTAATGAAGGCTATGAGAATGAGAGGTGGATGGAACAGGTATCAGTTCATACCTAATGCAAGAGTTCCCATTCTGATGGTCAAAAGTAATCTTGGAAACATCTCCTGTGATATTTCAGTCAATAACCTGAAAGCCCAAATGAAATCAAAACTCTTTTTATGGATGAATGATATAGATCCGCGCTTTCGTGATATGGTTTTACTGGTGAAGGAATGGGCAAAAGCACACAATATCAATAATTCAAAATCTGGGACTTTCAATTCATACTCTCTGAGTTTGCTTGTGATCTTCCATTTTCAGACATGTACACCTGCAATTCTGCCTCCTCTTCAAGACATATATACAGATACTCTCACGGATGATCTTAAAGGCTTGAGGGATGATGCAGAAAGACGTATTGAAAAAAGTTGTGTTGAGAACATGAGAAGATTTAAACTAAACAAATTGAGAGCTCAGAATAAAAGTTCTTTGTCTGAGCTTTTCATTTCATTCCTTGGGGAGTTCTCTGACCTTGGTTCGAAGGCTGCGGAGTTGGGAATTTGCACATATTCTGGAAAATGGGAAAGAATAGAAAGCAATATGGGATGGTTGCCCAAAACCTATTGTATATTGGTTGAAGATCCTTTTGATCGGCCAGAAAATTCTGCAAGAGGTGTCAGCCAAAAAGCATTGAAAAGGATCTCTGAAGTTTTTGAGATGAGTCGTGACAGGCTAATCGCAGTTAGTTACAATGCCTCCTTAGCCATTGAGAGTTCCCTTCTTGCCACACTAGTCCGACCACATACGCTACGTCTTATTAGCAACCCAGGTTACAATATTAAGCACCACCAAACAACTCATCCACAATATTTCAGGGCTGAGAGCTCACATTCACGAACCCCAAGACATCATTATAACGGTCCCCCGAAACCAAATGGTCCTTTTGTACGAGACTTGGTGCCCCCAAGGGAATATAACGGCCCCCCAAAACCAAATGGTAAGGTACGAGAGTTGGTGCCCCAAAGTGATTATAATGGCCCCCCGAAACCAAGTGATTCTTATGGACGAGAGTCGGCAGACTCGTCCCCACAAGGACATGGACTTCAACAACTACGAAAGATGGTGCACTCATCCTCACAAGTACAGCCACAAATACAGAAGCTGGTGCACTCACCGTCACAAGTACAAACGCATATACGAAAGTCTGTGCCCTCAACCTCACGCGTACAATCACCACTTCAGAAAGTGAAGCCAGAGAAGGCACCAATGCTACAGGCGTATCAGAAATGGACACCAAAGAAACCAGGAATGCAGACCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

520

Amino Acids

59.17

Weight (kDa)

9.63

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 3 - 139 8.8e-21 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1155, 1272
AarI CACCTGC 1 cut(s) 580
Acc36I ACCTGC 1 cut(s) 580
AccB1I GGYRCC 3 cut(s) 1198, 1255, 1501
AccII CGCG 2 cut(s) 442, 1464
AciI CCGC 2 cut(s) 440, 788
AclWI GGATC 4 cut(s) 151, 431, 875, 947
AcoI YGGCCR 1 cut(s) 893
AcsI RAATTY 3 cut(s) 72, 798, 901
AcuI CTGAAG 2 cut(s) 966, 1463
AfaI GTAC 7 cut(s) 252, 568, 1188, 1245, 1383, 1425, 1467
AflII CTTAAG 1 cut(s) 115
AflIII ACRYGT 3 cut(s) 28, 563, 1462
AgsI TTSAA 9 cut(s) 38, 192, 504, 520, 593, 662, 878, 934, 1346
AhlI ACTAGT 1 cut(s) 1030
AjnI CCWGG 2 cut(s) 1066, 1543
AluBI AGCT 6 cut(s) 95, 114, 713, 739, 1125, 1402
AluI AGCT 6 cut(s) 95, 114, 713, 739, 1125, 1402
Alw21I GWGCWC 4 cut(s) 715, 1127, 1368, 1410
Alw26I GTCTC 3 cut(s) 157, 171, 1185
Alw44I GTGCAC 2 cut(s) 1364, 1406
AlwI GGATC 4 cut(s) 151, 431, 875, 947
AlwNI CAGNNNCTG 1 cut(s) 1402
AoxI GGCC 3 cut(s) 893, 1219, 1276
ApaLI GTGCAC 2 cut(s) 1364, 1406
ApeKI GCWGC 1 cut(s) 785
ApoI RAATTY 3 cut(s) 72, 798, 901
AspLEI GCGC 2 cut(s) 212, 444
AspS9I GGNCC 4 cut(s) 1160, 1178, 1220, 1277
AsuHPI GGTGA 3 cut(s) 478, 1404, 1464
AsuII TTCGAA 1 cut(s) 779
AvaII GGWCC 2 cut(s) 1160, 1178
BaeGI GKGCMC 5 cut(s) 1203, 1260, 1368, 1410, 1452
BaeI ACNNNNGTAYC 4 cut(s) 1235, 1268, 1502, 1535
BanI GGYRCC 3 cut(s) 1198, 1255, 1501
BanII GRGCYC 2 cut(s) 715, 1127
Bbv12I GWGCWC 4 cut(s) 715, 1127, 1368, 1410
BbvI GCAGC 1 cut(s) 772
BccI CCATC 4 cut(s) 285, 331, 840, 1354
BceAI ACGGC 1 cut(s) 1234
BciT130I CCWGG 2 cut(s) 1068, 1545
BcoDI GTCTC 3 cut(s) 157, 171, 1185
BcuI ACTAGT 1 cut(s) 1030
BfaI CTAG 1 cut(s) 1031
BfmI CTRYAG 2 cut(s) 105, 1511
BfrI CTTAAG 1 cut(s) 115
BfuAI ACCTGC 1 cut(s) 580
BisI GCNGC 1 cut(s) 786
BlsI GCNGC 1 cut(s) 787
Bme1390I CCNGG 2 cut(s) 1068, 1545
Bme18I GGWCC 2 cut(s) 1160, 1178
BmgT120I GGNCC 4 cut(s) 1160, 1178, 1220, 1277
BmiI GGNNCC 7 cut(s) 135, 1162, 1200, 1222, 1257, 1279, 1503
BmrFI CCNGG 2 cut(s) 1068, 1545
BmsI GCATC 2 cut(s) 56, 634
BoxI GACNNNNGTC 1 cut(s) 1309
Bpu10I CCTNAGC 1 cut(s) 1000
Bpu14I TTCGAA 1 cut(s) 779
BpuEI CTTGAG 1 cut(s) 655
BsaAI YACGTR 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 4 cut(s) 754, 772, 1066, 1205
BsaXI ACNNNNNCTCC 2 cut(s) 980, 1010
Bse1I ACTGG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 2 cut(s) 1068, 1545
BseDI CCNNGG 4 cut(s) 754, 772, 1066, 1205
BseGI GGATG 8 cut(s) 190, 296, 429, 625, 646, 851, 1099, 1370
BseJI GATNNNNATC 1 cut(s) 435
BseMII CTCAG 6 cut(s) 28, 168, 524, 726, 728, 1110
BseNI ACTGG 1 cut(s) 468
BseRI GAGGAG 1 cut(s) 576
BseSI GKGCMC 5 cut(s) 1203, 1260, 1368, 1410, 1452
BseXI GCAGC 1 cut(s) 772
BseYI CCCAGC 1 cut(s) 171
Bsh1236I CGCG 2 cut(s) 442, 1464
BshFI GGCC 3 cut(s) 895, 1221, 1278
BshNI GGYRCC 3 cut(s) 1198, 1255, 1501
BsiHKAI GWGCWC 4 cut(s) 715, 1127, 1368, 1410
BslFI GGGAC 3 cut(s) 526, 1146, 1309
BsmAI GTCTC 3 cut(s) 157, 171, 1185
BsmFI GGGAC 3 cut(s) 526, 1146, 1309
BsmI GAATGC 1 cut(s) 1554
BsnI GGCC 3 cut(s) 895, 1221, 1278
Bsp119I TTCGAA 1 cut(s) 779
Bsp1286I GDGCHC 7 cut(s) 715, 1127, 1203, 1260, 1368, 1410, 1452
Bsp1407I TGTACA 1 cut(s) 566
Bsp143I GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
BspACI CCGC 2 cut(s) 440, 788
BspANI GGCC 3 cut(s) 895, 1221, 1278
BspCNI CTCAG 6 cut(s) 27, 167, 525, 727, 727, 1111
BspFNI CGCG 2 cut(s) 442, 1464
BspLI GGNNCC 7 cut(s) 135, 1162, 1200, 1222, 1257, 1279, 1503
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 4 cut(s) 151, 431, 875, 947
BspT104I TTCGAA 1 cut(s) 779
BspT107I GGYRCC 3 cut(s) 1198, 1255, 1501
BspTI CTTAAG 1 cut(s) 115
BsrGI TGTACA 1 cut(s) 566
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 4 cut(s) 754, 772, 1066, 1205
BssMI GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
BssT1I CCWWGG 3 cut(s) 754, 772, 1205
Bst2UI CCWGG 2 cut(s) 1068, 1545
Bst4CI ACNGT 3 cut(s) 130, 1160, 1416
Bst6I CTCTTC 1 cut(s) 594
BstAFI CTTAAG 1 cut(s) 115
BstAUI TGTACA 1 cut(s) 566
BstBAI YACGTR 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 779
BstDEI CTNAG 7 cut(s) 14, 154, 533, 714, 735, 1000, 1119
BstF5I GGATG 8 cut(s) 190, 296, 429, 625, 646, 851, 1099, 1370
BstFNI CGCG 2 cut(s) 442, 1464
BstHHI GCGC 2 cut(s) 212, 444
BstKTI GATC 8 cut(s) 55, 146, 439, 549, 625, 883, 892, 942
BstMAI GTCTC 3 cut(s) 157, 171, 1185
BstMBI GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
BstMWI GCNNNNNNNGC 1 cut(s) 1001
BstNI CCWGG 2 cut(s) 1068, 1545
BstNSI RCATGY 1 cut(s) 567
BstPAI GACNNNNGTC 1 cut(s) 1309
BstSCI CCNGG 2 cut(s) 1066, 1543
BstSFI CTRYAG 2 cut(s) 105, 1511
BstSLI GKGCMC 5 cut(s) 1203, 1260, 1368, 1410, 1452
BstUI CGCG 2 cut(s) 442, 1464
BstV1I GCAGC 1 cut(s) 772
BstX2I RGATCY 3 cut(s) 436, 880, 939
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 3 cut(s) 436, 880, 939
BsuRI GGCC 3 cut(s) 895, 1221, 1278
BtsCI GGATG 8 cut(s) 190, 296, 429, 625, 646, 851, 1099, 1370
BtsIMutI CAGTG 1 cut(s) 48
BveI ACCTGC 1 cut(s) 580
CaiI CAGNNNCTG 1 cut(s) 1402
CfoI GCGC 2 cut(s) 212, 444
Cfr13I GGNCC 4 cut(s) 1160, 1178, 1220, 1277
Csp6I GTAC 7 cut(s) 251, 567, 1187, 1244, 1382, 1424, 1466
CviAII CATG 3 cut(s) 564, 682, 1337
CviQI GTAC 7 cut(s) 251, 567, 1187, 1244, 1382, 1424, 1466
DdeI CTNAG 7 cut(s) 14, 154, 533, 714, 735, 1000, 1119
DpnI GATC 8 cut(s) 54, 145, 438, 548, 624, 882, 891, 941
DpnII GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
DraI TTTAAA 1 cut(s) 694
EaeI YGGCCR 1 cut(s) 893
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Ecl136II GAGCTC 2 cut(s) 713, 1125
Eco130I CCWWGG 3 cut(s) 754, 772, 1205
Eco24I GRGCYC 2 cut(s) 715, 1127
Eco47I GGWCC 2 cut(s) 1160, 1178
Eco53kI GAGCTC 2 cut(s) 713, 1125
Eco57I CTGAAG 2 cut(s) 966, 1463
EcoICRI GAGCTC 2 cut(s) 713, 1125
EcoRII CCWGG 2 cut(s) 1066, 1543
EcoT14I CCWWGG 3 cut(s) 754, 772, 1205
EcoT38I GRGCYC 2 cut(s) 715, 1127
ErhI CCWWGG 3 cut(s) 754, 772, 1205
FaeI CATG 3 cut(s) 567, 685, 1340
FalI AAGNNNNNCTT 2 cut(s) 1282, 1314
FaqI GGGAC 3 cut(s) 526, 1146, 1309
FatI CATG 3 cut(s) 563, 681, 1336
Fnu4HI GCNGC 1 cut(s) 786
FokI GGATG 8 cut(s) 197, 303, 436, 632, 653, 858, 1086, 1357
FriOI GRGCYC 2 cut(s) 715, 1127
Fsp4HI GCNGC 1 cut(s) 786
FspBI CTAG 1 cut(s) 1031
GlaI GCGC 2 cut(s) 211, 443
GluI GCNGC 1 cut(s) 786
GsaI CCCAGC 1 cut(s) 175
HaeIII GGCC 3 cut(s) 895, 1221, 1278
HhaI GCGC 2 cut(s) 212, 444
Hin1II CATG 3 cut(s) 567, 685, 1340
Hin6I GCGC 2 cut(s) 210, 442
HinP1I GCGC 2 cut(s) 210, 442
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 5 cut(s) 101, 961, 1295, 1310, 1319
HphI GGTGA 3 cut(s) 478, 1404, 1464
Hpy166II GTNNAC 3 cut(s) 569, 1366, 1408
Hpy188III TCNNGA 7 cut(s) 56, 80, 449, 593, 813, 965, 1134
Hpy8I GTNNAC 3 cut(s) 569, 1366, 1408
HpyAV CCTTC 5 cut(s) 262, 463, 775, 1028, 1492
HpyCH4III ACNGT 3 cut(s) 130, 1160, 1416
HpyCH4IV ACGT 3 cut(s) 28, 655, 1051
HpyCH4V TGCA 9 cut(s) 125, 320, 575, 647, 804, 908, 1366, 1408, 1552
HpyF10VI GCNNNNNNNGC 1 cut(s) 1001
HpyF3I CTNAG 7 cut(s) 14, 154, 533, 714, 735, 1000, 1119
HpySE526I ACGT 3 cut(s) 28, 655, 1051
Hsp92II CATG 3 cut(s) 567, 685, 1340
HspAI GCGC 2 cut(s) 210, 442
Kzo9I GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
LmnI GCTCC 2 cut(s) 92, 133
Lsp1109I GCAGC 1 cut(s) 772
LweI GCATC 2 cut(s) 56, 634
MaeI CTAG 1 cut(s) 1031
MaeII ACGT 3 cut(s) 28, 655, 1051
MaeIII GTNAC 5 cut(s) 84, 965, 986, 1070, 1416
MalI GATC 8 cut(s) 54, 145, 438, 548, 624, 882, 891, 941
MboI GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
MboII GAAGA 7 cut(s) 68, 213, 243, 541, 581, 699, 890
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 3 cut(s) 436, 880, 939
MhlI GDGCHC 7 cut(s) 715, 1127, 1203, 1260, 1368, 1410, 1452
MluCI AATT 8 cut(s) 72, 192, 499, 520, 576, 704, 798, 901
MluI ACGCGT 1 cut(s) 1462
MlyI GAGTC 4 cut(s) 110, 970, 1313, 1319
MmeI TCCRAC 1 cut(s) 1060
MseI TTAA 5 cut(s) 116, 263, 627, 693, 1080
MslI CAYNNNNRTG 1 cut(s) 335
MspCI CTTAAG 1 cut(s) 115
MspR9I CCNGG 2 cut(s) 1068, 1545
MunI CAATTG 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 1554
MvaI CCWGG 2 cut(s) 1068, 1545
MvnI CGCG 2 cut(s) 442, 1464
MwoI GCNNNNNNNGC 1 cut(s) 1001
NdeII GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
NlaIII CATG 3 cut(s) 567, 685, 1340
NlaIV GGNNCC 7 cut(s) 135, 1162, 1200, 1222, 1257, 1279, 1503
NmuCI GTSAC 2 cut(s) 965, 1416
NspI RCATGY 1 cut(s) 567
NspV TTCGAA 1 cut(s) 779
PaqCI CACCTGC 1 cut(s) 580
PciI ACATGT 1 cut(s) 563
PcsI WCGNNNNNNNCGW 2 cut(s) 61, 1319
PctI GAATGC 1 cut(s) 1554
PfeI GAWTC 1 cut(s) 1295
PkrI GCNGC 1 cut(s) 787
PleI GAGTC 4 cut(s) 109, 969, 1313, 1318
PpsI GAGTC 4 cut(s) 109, 969, 1313, 1318
Ppu21I YACGTR 1 cut(s) 29
PscI ACATGT 1 cut(s) 563
PshAI GACNNNNGTC 1 cut(s) 1309
PsiI TTATAA 2 cut(s) 1155, 1272
Psp124BI GAGCTC 2 cut(s) 715, 1127
Psp6I CCWGG 2 cut(s) 1066, 1543
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 2 cut(s) 1066, 1543
PspN4I GGNNCC 7 cut(s) 135, 1162, 1200, 1222, 1257, 1279, 1503
PspPI GGNCC 4 cut(s) 1160, 1178, 1220, 1277
PstNI CAGNNNCTG 1 cut(s) 1402
PsuI RGATCY 3 cut(s) 436, 880, 939
RsaI GTAC 7 cut(s) 252, 568, 1188, 1245, 1383, 1425, 1467
RsaNI GTAC 7 cut(s) 251, 567, 1187, 1244, 1382, 1424, 1466
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 2 cut(s) 715, 1127
SaqAI TTAA 5 cut(s) 116, 263, 627, 693, 1080
SatI GCNGC 1 cut(s) 786
Sau3AI GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
Sau96I GGNCC 4 cut(s) 1160, 1178, 1220, 1277
SchI GAGTC 4 cut(s) 110, 970, 1313, 1319
ScrFI CCNGG 2 cut(s) 1068, 1545
SduI GDGCHC 7 cut(s) 715, 1127, 1203, 1260, 1368, 1410, 1452
SfaNI GCATC 2 cut(s) 56, 634
SfcI CTRYAG 2 cut(s) 105, 1511
SfuI TTCGAA 1 cut(s) 779
SinI GGWCC 2 cut(s) 1160, 1178
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 115, 634
SmoI CTYRAG 2 cut(s) 115, 634
SpeI ACTAGT 1 cut(s) 1030
Sse9I AATT 8 cut(s) 72, 192, 499, 520, 576, 704, 798, 901
SsiI CCGC 2 cut(s) 440, 788
SspI AATATT 2 cut(s) 1078, 1109
SspMI CTAG 1 cut(s) 1031
SstI GAGCTC 2 cut(s) 715, 1127
StyD4I CCNGG 2 cut(s) 1066, 1543
StyI CCWWGG 3 cut(s) 754, 772, 1205
TaaI ACNGT 3 cut(s) 130, 1160, 1416
TaiI ACGT 3 cut(s) 31, 658, 1054
TaqI TCGA 2 cut(s) 55, 779
TasI AATT 8 cut(s) 72, 192, 499, 520, 576, 704, 798, 901
TatI WGTACW 4 cut(s) 250, 566, 1381, 1423
TfiI GAWTC 1 cut(s) 1295
Tru1I TTAA 5 cut(s) 116, 263, 627, 693, 1080
Tru9I TTAA 5 cut(s) 116, 263, 627, 693, 1080
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 2 cut(s) 965, 1416
TseI GCWGC 1 cut(s) 785
Tsp45I GTSAC 2 cut(s) 965, 1416
TspDTI ATGAA 7 cut(s) 281, 298, 416, 440, 513, 733, 738
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 1 cut(s) 55
Vha464I CTTAAG 1 cut(s) 115
VneI GTGCAC 2 cut(s) 1364, 1406
VpaK11BI GGWCC 2 cut(s) 1160, 1178
XapI RAATTY 3 cut(s) 72, 798, 901
XceI RCATGY 1 cut(s) 567
XspI CTAG 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.