Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002202

Physical Location & Seq

Genomic Coordinates Reverse (-)

556453 .. 560922

Gene Structure 4470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G008900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2598 bp

ATGGCACCTCCTAATGATCCTGTTAGTCCAATCCTCAGTTTGTGTCGGTCCAACAGTTTAGAACAATACTTTGATTTGTCTAATGGAAAGTTTAGTGTCAAAGGTGTTCCATTGCTCTCTGAAGTTCCAAGCAATGTCACTTTTAATCACTTCCACTCAACCTCCCAATCTTCTGATGCTCCATTTCCTCTATTCCAACGCGTTCGTGCCTTGTCCCACAAGGGCGGGTTCCTTGGATTCAACAAGGAGGAGCCCTCAGATAGGTTGATGAACTCCTTGGGTAGATTCAGTAACAGGGATTTCCTTAGCATCTTTAGGTTCAAGACCTGGTGGTCTACAATGTGGGTGGGGAATTCTGGGTCAAGTTTGCAAATGGAAACCCAATGGGTGCTCTTAGATGTCCCAGAGATTAAGTCCTATGTGATAATCCTGCCCATTATTGAAGGCAGTTTTAGGTCTGCTCTTCATCCTGGCACTGATGATCATGTAATGATCTGTGCTGAGAGTGGTTCTACCCAAGTGAAAGCATCGAATTTTGATGCCATCGCTTATGTTCATGCCTCTGAAAATCCCTACAACTTGATGAAAGAAGCCTATAGTGCTCTCAGGGTCCATCTCAATACCTTTAGGCTGTTAGAAGAGAAGACAATCCCAAATCTAGTTGACAAATTTGGTTGGTGTACTTGGGATGCCTTCTACTTAACTGTAGAACCTGTTGGTGTCTGGCATGGTGTCAACGAATTTGTCGAAGGCGGTGTATCCCCTAGGTTTCTCATCATTGATGATGGCTGGCAAAGCATCAATTTGGATGGTGAGGACCTGCATGAGGATGCGAAAAATCTAGTTCTTGGTGGGACTCAAATGACTGCTAGGCTTCACAGGTTTGAGGAGTGCAAGAAGTTCAGGAACTACAGAGGAGGGTCTATGTTGGGCCCTGATGCTCCTTCATTTGATCCCAAAAAGCCAAAGTTGTTGATAGCCAAGGCAATTGAAATAGAGCATGCTGAGAAGAATCGTGACAAGGCCATTCGATCTGGAGTCACTGACTTGTCCGAGTTTGAAACAAAAATTCAGAAGCTGAAGCAAGAGTTGGAAGAGATAATTGGTGAAGAAGAAAGCAGTGCTTCTAATGAAGGCTGTGGAAGCTGTTCTTGCGGAGCTGATAACTATGGAATGAAGGCCTTCACAAACGATTTGAGAACCAAATTTAAAGGTTTGGATGATATATATGTATGGCATGCTCTCTGTGGTGCCTGGGGTGGTGTTAGGCCAGGTGCAACCCATCTCAGTGCAAAGGTCATCCCCTGCAAAGTCTCTCCTGGACTTGATGGGACCATGACTGACCTTGCTGTGGTGAAAATCGTTGAGGGGGGGATCGGGCTTGTTAATCCTGATCAAGCCGATAATTTGTTTGACGCTATGCACTCCTACCTTTCCAAAGTTGGTATCACAGGAGTCAAAGTGGATGTTATTCATACTCTTGAATATGTATCTGAGGAATACGGAGGCCGTGTGGAGCTTGCAAAGGCTTATTACAAGGGGCTGACTCATTCTCTTCAGAAGAACTTCAATGGGACTGGACTTATTGCTAGCATGCATCAATGCAACGACTTCTTCTTCCTTGGGACAAAGCAAATCTCTATAGGAAGAGTTGGTGATGATTTTTGGTTCCAGGATCCAAATGGAGATCCTATGGGAGTTTACTGGTTACAAGGTGTTCATATGATTCATTGTGCCTACAACAGCATGTGGATGGGTCAGATAATACATCCAGATTGGGATATGTTCCAATCAGACCATCTGTGTGCCAAATTTCATGCAGGATCTAGGGCTATCTGTGGGGGTCCGGTATATGTAAGCGACTCGGTTGCTGGTCATGATTTCGATCTCATTAAGAAGCTTGTTTACCCAGATGGTACCATTCCCAAGTGCCAGCATTTTGCGCTTCCCACCAGGGACTGCCTCTTCAAAAACCCTTTATTCGACAACAAAACTGTTCTGAAAATTTGGAACTTCAACAAGTATGGTGGGGTTATTGGAGCTTTCAACTGCCAAGGGGCTGGCTGGGACCCCAAGGAGCAGAGGATCAAAGGCTACTCAGATTGCTACAAGCCAATCTCTTGTTCATTGCATGTTTCAGAACTTGAATGGGACCAAAAGATAGAAGCAGCCAATCTATGTAAGGCCGAAGAGTATGTGGTCTATCTCAACCAGGCTGAAGAACTTCGACTCGTGACCCCAAAATCTGATGCAATTCAAATCACCATCCAACCATCTACATTCGAGCTTTTCAGCTTTGTGCCAATTAAAAAGATCGGAAGCAGCATCAAGTTCGCGCCAATTGGACTTACAAACATGTTCAACAGTGGAGGAACTGTCCAAGAGTTGGAGTACAAAACTACTGCAGTTGAGTTTAGTGCCCAGATGAAGGTTAAAGGTGGAGGCAATTTCTTGGCCTACTCAAGTGAATCTCCAAAGAAATGTTGTTTGAATGGGACTGAGGTAGCTTTTGAGTGGTCAACTGATGGCAAACTGACCCTGAATCTTCCTTGGGTTGAAGAAGCTGCTGGCAATTCTGATGTGGTTTTTGCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006950 GO:0006979 GO:0008150 GO:0008378 GO:0009628 GO:0016740 GO:0016757 GO:0016758 GO:0047268 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

866

Amino Acids

96.19

Weight (kDa)

5.67

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01970 AT4G01970
fragaria_vesca	FvH4_1g27000 FvH4_7g13680
malus_domestica	MD09G1285100.v1.1 MD15G1191100.v1.1
prunus_persica	Prupe.3G008900_v2.0.a1 Prupe.7G226100_v2.0.a1
pyrus_communis	pycom09g19250
rosa_chinensis	RchiOBHm_Chr1g0353751 RchiOBHm_Chr2g0091201 RchiOBHm_Chr3g0487291 RchiOBHm_Chr3g0487311
rosa_laevigata	RLG00000016191 RLG00000023016 RLG00000023018 RLG00000028260
rosa_multiflora	Rmu_co8130058.1_g000001 Rmu_sc0002270.1_g000014 Rmu_sc0021704.1_g000002 Rmu_sc0033684.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150390 Rroxscaffold_4G00301680 Rroxscaffold_6G00394920 Rroxscaffold_6G00394970
rosa_rugosa	Rorug01G0237700 Rorug02G0014400 Rorug03G0232800
rosa_samantha	Rh1AG249700 Rh1BG219900 Rh1CG232300 Rh1DG246900 Rh2BG058900 Rh2CG060700 Rh3AG280600 Rh3AG280800 Rh3BG316500 Rh3CG314700 Rh3DG312500
rosa_wichuraiana	Rw1G021790 Rw2G004970 Rw3G024860 Rw3G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	828
Acc65I	GGTACC	1 cut(s)	1916
AccB1I	GGYRCC	3 cut(s)	4, 1250, 1916
AccB7I	CCANNNNNTGG	1 cut(s)	2386
AccI	GTMKAC	1 cut(s)	335
AccII	CGCG	2 cut(s)	201, 2336
AciI	CCGC	3 cut(s)	225, 753, 1155
AclWI	GGATC	8 cut(s)	11, 947, 1382, 1670, 1682, 1683, 1831, 2093
AcsI	RAATTY	8 cut(s)	352, 532, 668, 740, 1068, 1205, 1811, 2004
AcuI	CTGAAG	4 cut(s)	141, 1100, 1541, 2238
AfaI	GTAC	3 cut(s)	682, 1918, 2393
AfiI	CCNNNNNNNGG	5 cut(s)	261, 826, 1351, 2386, 2428
AflIII	ACRYGT	2 cut(s)	199, 2355
AjnI	CCWGG	8 cut(s)	326, 469, 1253, 1270, 1318, 1671, 1952, 2211
AjuI	GAANNNNNNNTTGG	6 cut(s)	1073, 1086, 1105, 1118, 2107, 2139
Alw21I	GWGCWC	2 cut(s)	393, 604
Alw26I	GTCTC	1 cut(s)	1318
AlwI	GGATC	8 cut(s)	11, 947, 1382, 1670, 1682, 1683, 1831, 2093
AlwNI	CAGNNNCTG	2 cut(s)	1078, 1959
AoxI	GGCC	7 cut(s)	931, 1023, 1179, 1268, 1507, 2184, 2454
ApaI	GGGCCC	1 cut(s)	935
ApeKI	GCWGC	3 cut(s)	2168, 2322, 2564
ApoI	RAATTY	8 cut(s)	352, 532, 668, 740, 1068, 1205, 1811, 2004
Asp700I	GAANNNNTTC	4 cut(s)	1147, 1181, 1565, 2223
Asp718I	GGTACC	1 cut(s)	1916
AspA2I	CCTAGG	1 cut(s)	764
AspLEI	GCGC	2 cut(s)	1945, 2338
AspS9I	GGNCC	9 cut(s)	48, 610, 817, 931, 932, 1332, 1844, 2068, 2152
AsuHPI	GGTGA	5 cut(s)	824, 1118, 1366, 1667, 2254
AsuNHI	GCTAGC	1 cut(s)	1589
AvaII	GGWCC	7 cut(s)	48, 610, 817, 1332, 1844, 2068, 2152
AvrII	CCTAGG	1 cut(s)	764
BaeGI	GKGCMC	2 cut(s)	935, 2422
BamHI	GGATCC	1 cut(s)	1675
BanI	GGYRCC	3 cut(s)	4, 1250, 1916
BanII	GRGCYC	2 cut(s)	255, 935
BarI	GAAGNNNNNNTAC	2 cut(s)	1889, 1921
BauI	CACGAG	1 cut(s)	2231
BbsI	GAAGAC	1 cut(s)	650
Bbv12I	GWGCWC	2 cut(s)	393, 604
BbvI	GCAGC	3 cut(s)	2180, 2334, 2551
BceAI	ACGGC	1 cut(s)	1494
BcgI	CGANNNNNNTGC	4 cut(s)	1850, 1884, 2314, 2348
BciT130I	CCWGG	8 cut(s)	328, 471, 1255, 1272, 1320, 1673, 1954, 2213
BciVI	GTATCC	1 cut(s)	769
BclI	TGATCA	2 cut(s)	481, 1393
BcoDI	GTCTC	1 cut(s)	1318
BfaI	CTAG	6 cut(s)	659, 765, 842, 870, 1590, 1827
BfmI	CTRYAG	5 cut(s)	595, 705, 910, 1641, 2403
BfuAI	ACCTGC	1 cut(s)	828
BfuI	GTATCC	1 cut(s)	769
BisI	GCNGC	3 cut(s)	2169, 2323, 2565
BlnI	CCTAGG	1 cut(s)	764
BlsI	GCNGC	3 cut(s)	2170, 2324, 2566
Bme1390I	CCNGG	8 cut(s)	328, 471, 1255, 1272, 1320, 1673, 1954, 2213
Bme18I	GGWCC	7 cut(s)	48, 610, 817, 1332, 1844, 2068, 2152
BmgT120I	GGNCC	9 cut(s)	48, 610, 817, 931, 932, 1332, 1844, 2068, 2152
BmrFI	CCNGG	8 cut(s)	328, 471, 1255, 1272, 1320, 1673, 1954, 2213
BmtI	GCTAGC	1 cut(s)	1593
BpiI	GAAGAC	1 cut(s)	650
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpmI	CTGGAG	1 cut(s)	1056
Bpu10I	CCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	2446
BsaBI	GATNNNNATC	1 cut(s)	1884
BsaWI	WCCGGW	1 cut(s)	1846
BsaXI	ACNNNNNCTCC	8 cut(s)	146, 176, 1446, 1476, 1497, 1527, 2361, 2391
Bsc4I	CCNNNNNNNGG	5 cut(s)	261, 826, 1351, 2386, 2428
Bse1I	ACTGG	2 cut(s)	1582, 1709
Bse3DI	GCAATG	3 cut(s)	110, 139, 2126
Bse8I	GATNNNNATC	1 cut(s)	1884
BseBI	CCWGG	8 cut(s)	328, 471, 1255, 1272, 1320, 1673, 1954, 2213
BseJI	GATNNNNATC	1 cut(s)	1884
BseLI	CCNNNNNNNGG	5 cut(s)	261, 826, 1351, 2386, 2428
BseMI	GCAATG	3 cut(s)	110, 139, 2126
BseMII	CTCAG	9 cut(s)	49, 270, 492, 619, 996, 1300, 1485, 2112, 2490
BseNI	ACTGG	2 cut(s)	1582, 1709
BseRI	GAGGAG	3 cut(s)	263, 902, 930
BseSI	GKGCMC	2 cut(s)	935, 2422
BseXI	GCAGC	3 cut(s)	2180, 2334, 2551
BseYI	CCCAGC	1 cut(s)	2064
Bsh1236I	CGCG	2 cut(s)	201, 2336
BshFI	GGCC	7 cut(s)	933, 1025, 1181, 1270, 1509, 2186, 2456
BshNI	GGYRCC	3 cut(s)	4, 1250, 1916
BsiHKAI	GWGCWC	2 cut(s)	393, 604
BsiSI	CCGG	1 cut(s)	1847
BslI	CCNNNNNNNGG	5 cut(s)	261, 826, 1351, 2386, 2428
BsmAI	GTCTC	1 cut(s)	1318
BsnI	GGCC	7 cut(s)	933, 1025, 1181, 1270, 1509, 2186, 2456
Bsp120I	GGGCCC	1 cut(s)	931
Bsp1286I	GDGCHC	5 cut(s)	255, 393, 604, 935, 2422
BspACI	CCGC	3 cut(s)	225, 753, 1155
BspANI	GGCC	7 cut(s)	933, 1025, 1181, 1270, 1509, 2186, 2456
BspCNI	CTCAG	9 cut(s)	48, 269, 493, 618, 997, 1299, 1486, 2111, 2491
BspFNI	CGCG	2 cut(s)	201, 2336
BspHI	TCATGA	1 cut(s)	1876
BspMAI	CTGCAG	1 cut(s)	2407
BspMI	ACCTGC	1 cut(s)	828
BspOI	GCTAGC	1 cut(s)	1593
BspPI	GGATC	8 cut(s)	11, 947, 1382, 1670, 1682, 1683, 1831, 2093
BspQI	GCTCTTC	1 cut(s)	468
BspT107I	GGYRCC	3 cut(s)	4, 1250, 1916
BsrDI	GCAATG	3 cut(s)	110, 139, 2126
BsrI	ACTGG	2 cut(s)	1582, 1709
BssSI	CACGAG	1 cut(s)	2231
BssT1I	CCWWGG	8 cut(s)	232, 276, 764, 981, 1621, 2053, 2073, 2549
Bst2BI	CACGAG	1 cut(s)	2231
Bst2UI	CCWGG	8 cut(s)	328, 471, 1255, 1272, 1320, 1673, 1954, 2213
Bst4CI	ACNGT	5 cut(s)	56, 706, 1996, 2366, 2377
Bst6I	CTCTTC	7 cut(s)	468, 633, 1089, 1560, 1642, 1970, 2184
BstC8I	GCNNGC	9 cut(s)	791, 1002, 1239, 1521, 1591, 1595, 1934, 2062, 2569
BstENI	CCTNNNNNAGG	2 cut(s)	259, 824
BstFNI	CGCG	2 cut(s)	201, 2336
BstHHI	GCGC	2 cut(s)	1945, 2338
BstMAI	GTCTC	1 cut(s)	1318
BstMWI	GCNNNNNNNGC	5 cut(s)	599, 795, 1143, 1152, 1942
BstNI	CCWGG	8 cut(s)	328, 471, 1255, 1272, 1320, 1673, 1954, 2213
BstNSI	RCATGY	6 cut(s)	1004, 1241, 1597, 1750, 2135, 2359
BstSCI	CCNGG	8 cut(s)	326, 469, 1253, 1270, 1318, 1671, 1952, 2211
BstSFI	CTRYAG	5 cut(s)	595, 705, 910, 1641, 2403
BstSLI	GKGCMC	2 cut(s)	935, 2422
BstUI	CGCG	2 cut(s)	201, 2336
BstV1I	GCAGC	3 cut(s)	2180, 2334, 2551
BstV2I	GAAGAC	1 cut(s)	650
BstX2I	RGATCY	3 cut(s)	1675, 1687, 1823
BstXI	CCANNNNNNTGG	1 cut(s)	2060
BstYI	RGATCY	3 cut(s)	1675, 1687, 1823
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	7 cut(s)	933, 1025, 1181, 1270, 1509, 2186, 2456
BtgZI	GCGATG	1 cut(s)	529
BtsI	GCAGTG	1 cut(s)	1126
BtsIMutI	CAGTG	5 cut(s)	474, 1041, 1126, 1294, 2371
BveI	ACCTGC	1 cut(s)	828
Cac8I	GCNNGC	9 cut(s)	791, 1002, 1239, 1521, 1591, 1595, 1934, 2062, 2569
CaiI	CAGNNNCTG	2 cut(s)	1078, 1959
CciI	TCATGA	1 cut(s)	1876
CfoI	GCGC	2 cut(s)	1945, 2338
Cfr13I	GGNCC	9 cut(s)	48, 610, 817, 931, 932, 1332, 1844, 2068, 2152
CseI	GACGC	1 cut(s)	1424
CsiI	ACCWGGT	1 cut(s)	326
Csp6I	GTAC	3 cut(s)	681, 1917, 2392
CspCI	CAANNNNNGTGG	4 cut(s)	327, 362, 2008, 2043
CviQI	GTAC	3 cut(s)	681, 1917, 2392
DraI	TTTAAA	1 cut(s)	1210
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
Eam1104I	CTCTTC	7 cut(s)	468, 633, 1089, 1560, 1642, 1970, 2184
EarI	CTCTTC	7 cut(s)	468, 633, 1089, 1560, 1642, 1970, 2184
Eco130I	CCWWGG	8 cut(s)	232, 276, 764, 981, 1621, 2053, 2073, 2549
Eco147I	AGGCCT	1 cut(s)	1181
Eco24I	GRGCYC	2 cut(s)	255, 935
Eco47I	GGWCC	7 cut(s)	48, 610, 817, 1332, 1844, 2068, 2152
Eco57I	CTGAAG	4 cut(s)	141, 1100, 1541, 2238
EcoNI	CCTNNNNNAGG	2 cut(s)	259, 824
EcoO109I	RGGNCCY	3 cut(s)	817, 932, 2068
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	8 cut(s)	326, 469, 1253, 1270, 1318, 1671, 1952, 2211
EcoT14I	CCWWGG	8 cut(s)	232, 276, 764, 981, 1621, 2053, 2073, 2549
EcoT22I	ATGCAT	1 cut(s)	1599
EcoT38I	GRGCYC	2 cut(s)	255, 935
ErhI	CCWWGG	8 cut(s)	232, 276, 764, 981, 1621, 2053, 2073, 2549
FalI	AAGNNNNNCTT	4 cut(s)	1108, 1140, 1135, 1167
FauI	CCCGC	1 cut(s)	218
FauNDI	CATATG	1 cut(s)	1722
FbaI	TGATCA	2 cut(s)	481, 1393
FblI	GTMKAC	1 cut(s)	335
Fnu4HI	GCNGC	3 cut(s)	2169, 2323, 2565
FriOI	GRGCYC	2 cut(s)	255, 935
Fsp4HI	GCNGC	3 cut(s)	2169, 2323, 2565
FspBI	CTAG	6 cut(s)	659, 765, 842, 870, 1590, 1827
GlaI	GCGC	2 cut(s)	1944, 2337
GluI	GCNGC	3 cut(s)	2169, 2323, 2565
GsaI	CCCAGC	1 cut(s)	2068
GsuI	CTGGAG	1 cut(s)	1056
HaeIII	GGCC	7 cut(s)	933, 1025, 1181, 1270, 1509, 2186, 2456
HapII	CCGG	1 cut(s)	1847
HgaI	GACGC	1 cut(s)	1424
HhaI	GCGC	2 cut(s)	1945, 2338
Hin6I	GCGC	2 cut(s)	1943, 2336
HinP1I	GCGC	2 cut(s)	1943, 2336
HincII	GTYRAC	3 cut(s)	664, 736, 2520
HindII	GTYRAC	3 cut(s)	664, 736, 2520
HindIII	AAGCTT	1 cut(s)	1898
HpaII	CCGG	1 cut(s)	1847
HphI	GGTGA	5 cut(s)	824, 1118, 1366, 1667, 2254
Hpy166II	GTNNAC	7 cut(s)	336, 664, 681, 736, 1702, 1906, 2520
Hpy188III	TCNNGA	9 cut(s)	322, 904, 1016, 1035, 1391, 1481, 1772, 1877, 2233
Hpy8I	GTNNAC	7 cut(s)	336, 664, 681, 736, 1702, 1906, 2520
HpyAV	CCTTC	8 cut(s)	437, 703, 743, 954, 1127, 1171, 1192, 2422
HpyCH4III	ACNGT	5 cut(s)	56, 706, 1996, 2366, 2377
HpyF10VI	GCNNNNNNNGC	5 cut(s)	599, 795, 1143, 1152, 1942
HspAI	GCGC	2 cut(s)	1943, 2336
KflI	GGGWCCC	1 cut(s)	2068
KpnI	GGTACC	1 cut(s)	1920
Ksp22I	TGATCA	2 cut(s)	481, 1393
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	7 cut(s)	184, 250, 946, 1157, 1516, 2039, 2077
Lsp1109I	GCAGC	3 cut(s)	2180, 2334, 2551
MabI	ACCWGGT	1 cut(s)	326
MaeI	CTAG	6 cut(s)	659, 765, 842, 870, 1590, 1827
MaeIII	GTNAC	6 cut(s)	136, 290, 1016, 1039, 1707, 2233
MfeI	CAATTG	2 cut(s)	987, 2340
MflI	RGATCY	3 cut(s)	1675, 1687, 1823
MhlI	GDGCHC	5 cut(s)	255, 393, 604, 935, 2422
MluI	ACGCGT	1 cut(s)	199
MlyI	GAGTC	6 cut(s)	850, 1047, 1464, 1540, 1856, 2223
MmeI	TCCRAC	5 cut(s)	75, 220, 1071, 2293, 2367
Mph1103I	ATGCAT	1 cut(s)	1599
MroXI	GAANNNNTTC	4 cut(s)	1147, 1181, 1565, 2223
MseI	TTAA	8 cut(s)	144, 411, 701, 1209, 1386, 1893, 2307, 2433
MslI	CAYNNNNRTG	4 cut(s)	828, 1287, 1751, 1803
MspI	CCGG	1 cut(s)	1847
MspR9I	CCNGG	8 cut(s)	328, 471, 1255, 1272, 1320, 1673, 1954, 2213
MunI	CAATTG	2 cut(s)	987, 2340
MvaI	CCWGG	8 cut(s)	328, 471, 1255, 1272, 1320, 1673, 1954, 2213
MvnI	CGCG	2 cut(s)	201, 2336
MwoI	GCNNNNNNNGC	5 cut(s)	599, 795, 1143, 1152, 1942
NdeI	CATATG	1 cut(s)	1722
NheI	GCTAGC	1 cut(s)	1589
NmuCI	GTSAC	4 cut(s)	136, 1016, 1039, 2233
NsiI	ATGCAT	1 cut(s)	1599
NspI	RCATGY	6 cut(s)	1004, 1241, 1597, 1750, 2135, 2359
PaeI	GCATGC	3 cut(s)	1004, 1241, 1597
PagI	TCATGA	1 cut(s)	1876
PceI	AGGCCT	1 cut(s)	1181
PciI	ACATGT	1 cut(s)	2355
PciSI	GCTCTTC	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PdmI	GAANNNNTTC	4 cut(s)	1147, 1181, 1565, 2223
PfeI	GAWTC	6 cut(s)	237, 285, 1012, 1726, 2468, 2542
PflMI	CCANNNNNTGG	1 cut(s)	2386
PfoI	TCCNGGA	2 cut(s)	1318, 1671
PkrI	GCNGC	3 cut(s)	2170, 2324, 2566
PleI	GAGTC	6 cut(s)	850, 1046, 1463, 1540, 1856, 2223
PpsI	GAGTC	6 cut(s)	850, 1046, 1463, 1540, 1856, 2223
PpuMI	RGGWCCY	2 cut(s)	817, 2068
PscI	ACATGT	1 cut(s)	2355
Psp5II	RGGWCCY	2 cut(s)	817, 2068
Psp6I	CCWGG	8 cut(s)	326, 469, 1253, 1270, 1318, 1671, 1952, 2211
PspFI	CCCAGC	1 cut(s)	2064
PspGI	CCWGG	8 cut(s)	326, 469, 1253, 1270, 1318, 1671, 1952, 2211
PspOMI	GGGCCC	1 cut(s)	931
PspPI	GGNCC	9 cut(s)	48, 610, 817, 931, 932, 1332, 1844, 2068, 2152
PspPPI	RGGWCCY	2 cut(s)	817, 2068
PstI	CTGCAG	1 cut(s)	2407
PstNI	CAGNNNCTG	2 cut(s)	1078, 1959
PsuI	RGATCY	3 cut(s)	1675, 1687, 1823
RsaI	GTAC	3 cut(s)	682, 1918, 2393
RsaNI	GTAC	3 cut(s)	681, 1917, 2392
RseI	CAYNNNNRTG	4 cut(s)	828, 1287, 1751, 1803
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	8 cut(s)	144, 411, 701, 1209, 1386, 1893, 2307, 2433
SatI	GCNGC	3 cut(s)	2169, 2323, 2565
Sau96I	GGNCC	9 cut(s)	48, 610, 817, 931, 932, 1332, 1844, 2068, 2152
SchI	GAGTC	6 cut(s)	850, 1047, 1464, 1540, 1856, 2223
ScrFI	CCNGG	8 cut(s)	328, 471, 1255, 1272, 1320, 1673, 1954, 2213
SduI	GDGCHC	5 cut(s)	255, 393, 604, 935, 2422
SexAI	ACCWGGT	1 cut(s)	326
SfcI	CTRYAG	5 cut(s)	595, 705, 910, 1641, 2403
SinI	GGWCC	7 cut(s)	48, 610, 817, 1332, 1844, 2068, 2152
SmiMI	CAYNNNNRTG	4 cut(s)	828, 1287, 1751, 1803
SmlI	CTYRAG	1 cut(s)	2461
SmoI	CTYRAG	1 cut(s)	2461
SphI	GCATGC	3 cut(s)	1004, 1241, 1597
SseBI	AGGCCT	1 cut(s)	1181
SsiI	CCGC	3 cut(s)	225, 753, 1155
SspMI	CTAG	6 cut(s)	659, 765, 842, 870, 1590, 1827
StuI	AGGCCT	1 cut(s)	1181
StyD4I	CCNGG	8 cut(s)	326, 469, 1253, 1270, 1318, 1671, 1952, 2211
StyI	CCWWGG	8 cut(s)	232, 276, 764, 981, 1621, 2053, 2073, 2549
TaaI	ACNGT	5 cut(s)	56, 706, 1996, 2366, 2377
TaqI	TCGA	7 cut(s)	530, 747, 1030, 1884, 1983, 2227, 2283
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	2 cut(s)	680, 2391
TfiI	GAWTC	6 cut(s)	237, 285, 1012, 1726, 2468, 2542
Tru1I	TTAA	8 cut(s)	144, 411, 701, 1209, 1386, 1893, 2307, 2433
Tru9I	TTAA	8 cut(s)	144, 411, 701, 1209, 1386, 1893, 2307, 2433
TscAI	CASTG	5 cut(s)	481, 1048, 1126, 1294, 2371
TseFI	GTSAC	4 cut(s)	136, 1016, 1039, 2233
TseI	GCWGC	3 cut(s)	2168, 2322, 2564
Tsp45I	GTSAC	4 cut(s)	136, 1016, 1039, 2233
TspGWI	ACGGA	1 cut(s)	1518
TspRI	CASTG	5 cut(s)	481, 1048, 1126, 1294, 2371
Van91I	CCANNNNNTGG	1 cut(s)	2386
VpaK11BI	GGWCC	7 cut(s)	48, 610, 817, 1332, 1844, 2068, 2152
XagI	CCTNNNNNAGG	2 cut(s)	259, 824
XapI	RAATTY	8 cut(s)	352, 532, 668, 740, 1068, 1205, 1811, 2004
XceI	RCATGY	6 cut(s)	1004, 1241, 1597, 1750, 2135, 2359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1679
XmaJI	CCTAGG	1 cut(s)	764
XmiI	GTMKAC	1 cut(s)	335
XmnI	GAANNNNTTC	4 cut(s)	1147, 1181, 1565, 2223
XspI	CTAG	6 cut(s)	659, 765, 842, 870, 1590, 1827
Zsp2I	ATGCAT	1 cut(s)	1599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.