Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8130058.1

Orthogroup ID

OG0002202

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 629

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8130058.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ataaatttggttggtgcacttgggatgccttctacttaactgtggaacctgttggtgtctcccatggtgtaaatgaattcgttgaagctggtgtacccccaaggtttcttatcattgatgatggttggcaaagcattaatttcgatgatgatgagaacccgaatgaggatgcgaagaatctagtcattggtgggagtcaaatgactgctaggcttcacaggcttgaggagtgtgacaagttcaaaaactacaaaggtggatctttactgggtcctcatgcaccttcatttgatccaaaaaggccaaagatgttgatatccaaggcaattgaattagagaatgttgaaaaggctcgcgataaggccattcaatctggagtcactgatttgtccgagttccaaaaacaaatgcagaagcataaacaagagttggatatgataattggtggtggagaagaagtcagtgtttcgaaagaaggaagctgtagaagctgttcttgcaaggctaaaaattatggaatgaagtctttcacatgcgacttgagaaccaagttcaagaatttggatgatatttatgtgtggcatgctctttgtggtgcctggggtggtgttaaaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006950 GO:0006979 GO:0008150 GO:0008378 GO:0009628 GO:0016740 GO:0016757 GO:0016758 GO:0047268 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

205

Amino Acids

22.95

Weight (kDa)

6.0

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01970 AT4G01970
fragaria_vesca	FvH4_1g27000 FvH4_7g13680
malus_domestica	MD09G1285100.v1.1 MD15G1191100.v1.1
prunus_persica	Prupe.3G008900_v2.0.a1 Prupe.7G226100_v2.0.a1
pyrus_communis	pycom09g19250
rosa_chinensis	RchiOBHm_Chr1g0353751 RchiOBHm_Chr2g0091201 RchiOBHm_Chr3g0487291 RchiOBHm_Chr3g0487311
rosa_laevigata	RLG00000016191 RLG00000023016 RLG00000023018 RLG00000028260
rosa_multiflora	Rmu_co8130058.1_g000001 Rmu_sc0002270.1_g000014 Rmu_sc0021704.1_g000002 Rmu_sc0033684.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150390 Rroxscaffold_4G00301680 Rroxscaffold_6G00394920 Rroxscaffold_6G00394970
rosa_rugosa	Rorug01G0237700 Rorug02G0014400 Rorug03G0232800
rosa_samantha	Rh1AG249700 Rh1BG219900 Rh1CG232300 Rh1DG246900 Rh2BG058900 Rh2CG060700 Rh3AG280600 Rh3AG280800 Rh3BG316500 Rh3CG314700 Rh3DG312500
rosa_wichuraiana	Rw1G021790 Rw2G004970 Rw3G024860 Rw3G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	595
AccII	CGCG	1 cut(s)	356
AclWI	GGATC	2 cut(s)	267, 286
AcsI	RAATTY	3 cut(s)	4, 76, 558
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	6 cut(s)	85, 243, 331, 346, 370, 555
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	3 cut(s)	88, 482, 491
AluI	AGCT	3 cut(s)	88, 482, 491
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	63
Alw44I	GTGCAC	1 cut(s)	15
AlwI	GGATC	2 cut(s)	267, 286
AoxI	GGCC	2 cut(s)	301, 362
ApaLI	GTGCAC	1 cut(s)	15
ApoI	RAATTY	3 cut(s)	4, 76, 558
AseI	ATTAAT	1 cut(s)	137
Asp700I	GAANNNNTTC	2 cut(s)	492, 526
AspS9I	GGNCC	1 cut(s)	271
AsuII	TTCGAA	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	271
BaeGI	GKGCMC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	595
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
Bbv12I	GWGCWC	1 cut(s)	19
BccI	CCATC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	123, 157
BciT130I	CCWGG	1 cut(s)	600
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	2 cut(s)	181, 209
BfmI	CTRYAG	1 cut(s)	483
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	3 cut(s)	47, 272, 597
BmrFI	CCNGG	1 cut(s)	600
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	2 cut(s)	15, 159
BmuI	ACTGGG	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	395
Bpu14I	TTCGAA	1 cut(s)	469
BpuEI	CTTGAG	2 cut(s)	244, 561
BsaJI	CCNNGG	4 cut(s)	63, 100, 320, 599
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	4 cut(s)	63, 100, 320, 599
BseGI	GGATG	3 cut(s)	30, 174, 570
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	356
BshFI	GGCC	2 cut(s)	303, 364
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	303, 364
Bsp119I	TTCGAA	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	259, 291
Bsp19I	CCATGG	1 cut(s)	63
Bsp68I	TCGCGA	1 cut(s)	356
BspANI	GGCC	2 cut(s)	303, 364
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	3 cut(s)	47, 272, 597
BspPI	GGATC	2 cut(s)	267, 286
BspT104I	TTCGAA	1 cut(s)	469
BspT107I	GGYRCC	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	63, 100, 320, 599
BssMI	GATC	2 cut(s)	259, 291
BssT1I	CCWWGG	3 cut(s)	63, 100, 320
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	354, 584
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	3 cut(s)	30, 174, 570
BstFNI	CGCG	1 cut(s)	356
BstKTI	GATC	2 cut(s)	262, 294
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	259, 291
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 488, 497
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	2 cut(s)	536, 586
BstSCI	CCNGG	1 cut(s)	598
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	19
BstUI	CGCG	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	303, 364
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	30, 174, 570
BtsIMutI	CAGTG	2 cut(s)	380, 468
BtuMI	TCGCGA	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	354, 584
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	4 cut(s)	64, 277, 533, 583
CviJI	RGCY	9 cut(s)	88, 213, 222, 303, 352, 364, 482, 491, 505
CviKI_1	RGCY	9 cut(s)	88, 213, 222, 303, 352, 364, 482, 491, 505
CviQI	GTAC	1 cut(s)	94
DpnI	GATC	2 cut(s)	261, 293
DpnII	GATC	2 cut(s)	259, 291
Eco130I	CCWWGG	3 cut(s)	63, 100, 320
Eco32I	GATATC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	317
EcoT14I	CCWWGG	3 cut(s)	63, 100, 320
ErhI	CCWWGG	3 cut(s)	63, 100, 320
FaeI	CATG	4 cut(s)	67, 280, 536, 586
FaiI	YATR	8 cut(s)	65, 278, 419, 436, 515, 534, 575, 584
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FatI	CATG	4 cut(s)	63, 276, 532, 582
FokI	GGATG	3 cut(s)	37, 181, 577
FspBI	CTAG	2 cut(s)	181, 209
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	303, 364
Hin1II	CATG	4 cut(s)	67, 280, 536, 586
HinfI	GANTC	3 cut(s)	177, 195, 377
Hpy166II	GTNNAC	2 cut(s)	17, 94
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	3 cut(s)	355, 374, 555
Hpy8I	GTNNAC	2 cut(s)	17, 94
HpyAV	CCTTC	3 cut(s)	39, 293, 469
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	17, 280, 411, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 488, 497
Hsp92II	CATG	4 cut(s)	67, 280, 536, 586
Kzo9I	GATC	2 cut(s)	259, 291
LpnPI	CCDG	7 cut(s)	62, 74, 204, 253, 359, 585, 612
LweI	GCATC	2 cut(s)	15, 159
MaeI	CTAG	2 cut(s)	181, 209
MaeIII	GTNAC	2 cut(s)	232, 378
MalI	GATC	2 cut(s)	261, 293
MboI	GATC	2 cut(s)	259, 291
MboII	GAAGA	2 cut(s)	186, 466
MfeI	CAATTG	1 cut(s)	326
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	8 cut(s)	4, 76, 138, 326, 331, 440, 510, 558
MlyI	GAGTC	2 cut(s)	204, 386
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	3 cut(s)	159, 219, 284
MroXI	GAANNNNTTC	2 cut(s)	492, 526
MseI	TTAA	3 cut(s)	37, 137, 611
MspR9I	CCNGG	1 cut(s)	600
MunI	CAATTG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	3 cut(s)	219, 488, 497
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	2 cut(s)	259, 291
NlaIII	CATG	4 cut(s)	67, 280, 536, 586
NlaIV	GGNNCC	3 cut(s)	47, 272, 597
NmuCI	GTSAC	2 cut(s)	232, 378
NruI	TCGCGA	1 cut(s)	356
NspI	RCATGY	2 cut(s)	536, 586
NspV	TTCGAA	1 cut(s)	469
PaeI	GCATGC	1 cut(s)	586
PdmI	GAANNNNTTC	2 cut(s)	492, 526
PfeI	GAWTC	1 cut(s)	177
PleI	GAGTC	2 cut(s)	203, 385
PpsI	GAGTC	2 cut(s)	203, 385
PpuMI	RGGWCCY	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	3 cut(s)	47, 272, 597
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
PsrI	GAACNNNNNNTAC	2 cut(s)	477, 509
PsuI	RGATCY	1 cut(s)	259
RruI	TCGCGA	1 cut(s)	356
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SaqAI	TTAA	3 cut(s)	37, 137, 611
Sau3AI	GATC	2 cut(s)	259, 291
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	2 cut(s)	204, 386
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	7 cut(s)	51, 90, 106, 258, 285, 484, 493
SfaNI	GCATC	2 cut(s)	15, 159
SfcI	CTRYAG	1 cut(s)	483
SfuI	TTCGAA	1 cut(s)	469
SinI	GGWCC	1 cut(s)	271
SmlI	CTYRAG	2 cut(s)	223, 540
SmoI	CTYRAG	2 cut(s)	223, 540
SphI	GCATGC	1 cut(s)	586
Sse9I	AATT	8 cut(s)	4, 76, 138, 326, 331, 440, 510, 558
SspMI	CTAG	2 cut(s)	181, 209
StyD4I	CCNGG	1 cut(s)	598
StyI	CCWWGG	3 cut(s)	63, 100, 320
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	143, 469
TasI	AATT	8 cut(s)	4, 76, 138, 326, 331, 440, 510, 558
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	3 cut(s)	37, 137, 611
Tru9I	TTAA	3 cut(s)	37, 137, 611
TscAI	CASTG	2 cut(s)	387, 468
TseFI	GTSAC	2 cut(s)	232, 378
Tsp45I	GTSAC	2 cut(s)	232, 378
TspDTI	ATGAA	3 cut(s)	89, 275, 535
TspRI	CASTG	2 cut(s)	387, 468
VneI	GTGCAC	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	137
XapI	RAATTY	3 cut(s)	4, 76, 558
XceI	RCATGY	2 cut(s)	536, 586
XmnI	GAANNNNTTC	2 cut(s)	492, 526
XspI	CTAG	2 cut(s)	181, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.