RchiOBHm_Chr3g0487311

Stachyose

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
34493726 .. 34495142
1417 bp
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UTR
Exon/CDS
Intron
PRQ45174

Sequence Viewer

Length: 1368 bp
ATGGCACCTCCTAATGATCCTCTTAGTCCAGTTTTCAAGGCGTTCCGGTCCGAGAGTTCTGGACAATACTTTGACCTCTCTAATGGAAAGCTTAGTGTCAAAGGTGTTCCATTGCTCTCTGAAGTTCCAAGCAATGTAACTTTCAGGGACTTCCACTCACCCTGCCAATCCTCTGATGCTCCACTTCCTCTGCTCCAACGGGTTCGTGCTTCATCCCACAAGGGTGCTTTCCTTGGATTCAACAAGGAGGTTCCCTCAGATAGGCTGCTCAACTCCTTGGGGAAACTCAGTAACAGGGATTTCCTTAGCATCTTTAGGTTCAAGACATGGTGGTCTACCATGTGGGTAGGAAACTCTGGTTCAAACTTGCAAATGGAAACCCAATGGGTGCTCTTAGATGTCCCGGAGATCAAGTCCTATGTTATAATCATACCGATCATTGAAGCCAATTTCAGGTCTGCTCTTCATCCTGGCAGTGATGACCATGTCATGATCTGTGCCGAGAGTGGTTCTAGTCAAGTAAAAGCGTCGAATTTCGATGCCATTGCTTATGTTAATGCTTCTGACAATCCCTACAACTTGATGAAAGAAGCCTATAGTGCTGTTAGAGTCCATCTCAATAGTTTTAGGCTCTTGGAAGAGAAGACGGTCCCAAATCTAGTTAACAAATTCGGTTGGTGCACTTGGGATGCATTCTACTTAAATGTAGAACCTGTTGGTGTCTGGCATGGTCTGAATGAATTTATTGAAGGCGGTGTGTCCCCGCGGTTTCTCATCATTGATGATGGTTGGCAAAGCATCAATATGGATGATGAGGACCTGAAGGAGGAAACGAAAAAACTAGTTCATGGTGGTACTAAAATGATTGCTAGGCTTCACAGGTTTGAGGAGTGCAAGAAGTTCAGGAACTACAGAGGTGGGTCTATGTTGGGTCTTGACGCTCCTTCACATGCTGAGAAGGATTGCGACAAGGCCCTTCATTCTGGAGTCACTGAGTTATCTGTGTTTGAAACTAAACTTCAGAAGCTGAAGATAGAGTTGAATGAGATCATTGGTGGAGGAGAGAGCAGTGCTCCTAGTGAAGGCCGTGGAACCAGTTCTTGCAGTGATGAAAATTATGGAATGAGGGCTTTCACCGGTGACTTGAGAACCAAGTTTAAAGGTTTGGATGATATATATGTATGGCATGCCATTTGTGGTGCCTGGGGTGGTGTTAGGCCAGGTTCAACTCATCTCAGTTCAAAGATCATTCCTTGCAAAGTCTCACCTGGACTAGACGGGACAATGAATGATTCCGCTGTGGTGAAAATCGTTGAGAGCGGGATTGGGCTTGTTCATCCTGATGAAGCTGATAGTTTCTATGACTAA
Functional Annotation

Protein Analysis

455

Amino Acids

50.35

Weight (kDa)

5.76

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Raffinose_syn PF05691 24 - 455 1.3e-136 Raffinose synthase or seed imbibition protein Sip1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
AasI GACNNNNNNGTC 1 cut(s) 331
AccB1I GGYRCC 2 cut(s) 4, 1199
AccBSI CCGCTC 1 cut(s) 1320
AccI GTMKAC 1 cut(s) 335
AccII CGCG 1 cut(s) 766
AciI CCGC 5 cut(s) 753, 764, 766, 1296, 1320
AclWI GGATC 1 cut(s) 11
AcsI RAATTY 3 cut(s) 532, 668, 740
AcuI CTGAAG 4 cut(s) 141, 842, 1004, 1049
AfaI GTAC 1 cut(s) 856
AfiI CCNNNNNNNGG 4 cut(s) 261, 453, 826, 1082
AgeI ACCGGT 1 cut(s) 1136
AhlI ACTAGT 1 cut(s) 841
AjnI CCWGG 4 cut(s) 469, 1202, 1219, 1267
AleI CACNNNNGTG 1 cut(s) 222
AluBI AGCT 3 cut(s) 91, 1027, 1349
AluI AGCT 3 cut(s) 91, 1027, 1349
Alw21I GWGCWC 3 cut(s) 393, 683, 1075
Alw26I GTCTC 1 cut(s) 1267
Alw44I GTGCAC 1 cut(s) 679
AlwI GGATC 1 cut(s) 11
AlwNI CAGNNNCTG 1 cut(s) 1027
AoxI GGCC 3 cut(s) 972, 1084, 1217
ApaLI GTGCAC 1 cut(s) 679
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 3 cut(s) 532, 668, 740
AsiGI ACCGGT 1 cut(s) 1136
Asp700I GAANNNNTTC 1 cut(s) 1096
AspS9I GGNCC 4 cut(s) 48, 649, 817, 973
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 5 cut(s) 150, 1126, 1151, 1257, 1315
AvaII GGWCC 3 cut(s) 48, 649, 817
BaeGI GKGCMC 1 cut(s) 683
BanI GGYRCC 2 cut(s) 4, 1199
BbsI GAAGAC 1 cut(s) 650
Bbv12I GWGCWC 3 cut(s) 393, 683, 1075
BbvI GCAGC 1 cut(s) 252
BccI CCATC 2 cut(s) 621, 779
BceAI ACGGC 1 cut(s) 1071
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BciT130I CCWGG 4 cut(s) 471, 1204, 1221, 1269
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 1267
BcuI ACTAGT 1 cut(s) 841
BfaI CTAG 6 cut(s) 513, 659, 842, 870, 1077, 1274
BfmI CTRYAG 2 cut(s) 595, 910
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme1390I CCNGG 5 cut(s) 404, 471, 1204, 1221, 1269
Bme18I GGWCC 3 cut(s) 48, 649, 817
BmgT120I GGNCC 4 cut(s) 48, 649, 817, 973
BmiI GGNNCC 5 cut(s) 6, 252, 651, 1093, 1201
BmrFI CCNGG 5 cut(s) 404, 471, 1204, 1221, 1269
BmsI GCATC 5 cut(s) 166, 318, 529, 679, 807
BpiI GAAGAC 1 cut(s) 650
BplI GAGNNNNNCTC 6 cut(s) 239, 271, 600, 632, 1057, 1089
BpmI CTGGAG 1 cut(s) 1005
Bpu10I CCTNAGC 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 1165
BpuMI CCSGG 1 cut(s) 404
BsaJI CCNNGG 5 cut(s) 232, 276, 764, 1087, 1203
BsaWI WCCGGW 2 cut(s) 45, 1136
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 4 cut(s) 261, 453, 826, 1082
Bse118I RCCGGY 1 cut(s) 1136
Bse1I ACTGG 2 cut(s) 29, 1095
Bse3DI GCAATG 3 cut(s) 110, 139, 543
BseBI CCWGG 4 cut(s) 471, 1204, 1221, 1269
BseDI CCNNGG 5 cut(s) 232, 276, 764, 1087, 1203
BseGI GGATG 6 cut(s) 212, 466, 694, 814, 1174, 1336
BseLI CCNNNNNNNGG 4 cut(s) 261, 453, 826, 1082
BseMI GCAATG 3 cut(s) 110, 139, 543
BseMII CTCAG 5 cut(s) 270, 301, 945, 984, 1249
BseNI ACTGG 2 cut(s) 29, 1095
BseRI GAGGAG 2 cut(s) 902, 1074
BseSI GKGCMC 1 cut(s) 683
BseXI GCAGC 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 766
BshFI GGCC 3 cut(s) 974, 1086, 1219
BshNI GGYRCC 2 cut(s) 4, 1199
BshTI ACCGGT 1 cut(s) 1136
BsiHKAI GWGCWC 3 cut(s) 393, 683, 1075
BsiSI CCGG 3 cut(s) 46, 404, 1137
BslFI GGGAC 5 cut(s) 161, 386, 635, 745, 1294
BslI CCNNNNNNNGG 4 cut(s) 261, 453, 826, 1082
BsmAI GTCTC 1 cut(s) 1267
BsmFI GGGAC 5 cut(s) 161, 386, 635, 745, 1294
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 3 cut(s) 974, 1086, 1219
Bsp1286I GDGCHC 3 cut(s) 393, 683, 1075
Bsp143I GATC 6 cut(s) 16, 408, 435, 492, 1047, 1245
BspACI CCGC 5 cut(s) 753, 764, 766, 1296, 1320
BspANI GGCC 3 cut(s) 974, 1086, 1219
BspCNI CTCAG 5 cut(s) 269, 300, 946, 985, 1248
BspFNI CGCG 1 cut(s) 766
BspHI TCATGA 1 cut(s) 489
BspLI GGNNCC 5 cut(s) 6, 252, 651, 1093, 1201
BspPI GGATC 1 cut(s) 11
BspQI GCTCTTC 1 cut(s) 468
BspT107I GGYRCC 2 cut(s) 4, 1199
BsrBI CCGCTC 1 cut(s) 1320
BsrDI GCAATG 3 cut(s) 110, 139, 543
BsrFI RCCGGY 1 cut(s) 1136
BsrI ACTGG 2 cut(s) 29, 1095
BssAI RCCGGY 1 cut(s) 1136
BssECI CCNNGG 5 cut(s) 232, 276, 764, 1087, 1203
BssMI GATC 6 cut(s) 16, 408, 435, 492, 1047, 1245
BssT1I CCWWGG 2 cut(s) 232, 276
Bst2UI CCWGG 4 cut(s) 471, 1204, 1221, 1269
Bst4CI ACNGT 1 cut(s) 649
Bst6I CTCTTC 2 cut(s) 468, 633
BstC8I GCNNGC 1 cut(s) 1188
BstDEI CTNAG 9 cut(s) 23, 92, 256, 287, 305, 394, 954, 993, 1235
BstDSI CCRYGG 2 cut(s) 764, 1087
BstENI CCTNNNNNAGG 3 cut(s) 259, 824, 1080
BstF5I GGATG 6 cut(s) 212, 466, 694, 814, 1174, 1336
BstFNI CGCG 1 cut(s) 766
BstKTI GATC 6 cut(s) 19, 411, 438, 495, 1050, 1248
BstMAI GTCTC 1 cut(s) 1267
BstMBI GATC 6 cut(s) 16, 408, 435, 492, 1047, 1245
BstMWI GCNNNNNNNGC 1 cut(s) 599
BstNI CCWGG 4 cut(s) 471, 1204, 1221, 1269
BstNSI RCATGY 2 cut(s) 953, 1190
BstSCI CCNGG 5 cut(s) 402, 469, 1202, 1219, 1267
BstSFI CTRYAG 2 cut(s) 595, 910
BstSLI GKGCMC 1 cut(s) 683
BstUI CGCG 1 cut(s) 766
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 650
BsuRI GGCC 3 cut(s) 974, 1086, 1219
BtgI CCRYGG 2 cut(s) 764, 1087
BtsCI GGATG 6 cut(s) 212, 466, 694, 814, 1174, 1336
BtsI GCAGTG 3 cut(s) 481, 1075, 1111
BtsIMutI CAGTG 4 cut(s) 481, 990, 1075, 1111
Cac8I GCNNGC 1 cut(s) 1188
CaiI CAGNNNCTG 1 cut(s) 1027
CciI TCATGA 1 cut(s) 489
Cfr10I RCCGGY 1 cut(s) 1136
Cfr13I GGNCC 4 cut(s) 48, 649, 817, 973
Cfr42I CCGCGG 1 cut(s) 767
CpoI CGGWCCG 1 cut(s) 48
CseI GACGC 2 cut(s) 516, 947
Csp6I GTAC 1 cut(s) 855
CspAI ACCGGT 1 cut(s) 1136
CspI CGGWCCG 1 cut(s) 48
CviAII CATG 8 cut(s) 327, 340, 485, 490, 728, 848, 950, 1187
CviQI GTAC 1 cut(s) 855
DdeI CTNAG 9 cut(s) 23, 92, 256, 287, 305, 394, 954, 993, 1235
DpnI GATC 6 cut(s) 18, 410, 437, 494, 1049, 1247
DpnII GATC 6 cut(s) 16, 408, 435, 492, 1047, 1245
DraI TTTAAA 1 cut(s) 1159
DrdI GACNNNNNNGTC 1 cut(s) 331
DseDI GACNNNNNNGTC 1 cut(s) 331
Eam1104I CTCTTC 2 cut(s) 468, 633
EarI CTCTTC 2 cut(s) 468, 633
Eco130I CCWWGG 2 cut(s) 232, 276
Eco47I GGWCC 3 cut(s) 48, 649, 817
Eco57I CTGAAG 4 cut(s) 141, 842, 1004, 1049
EcoNI CCTNNNNNAGG 3 cut(s) 259, 824, 1080
EcoO109I RGGNCCY 2 cut(s) 817, 973
EcoRII CCWGG 4 cut(s) 469, 1202, 1219, 1267
EcoT14I CCWWGG 2 cut(s) 232, 276
EcoT22I ATGCAT 1 cut(s) 694
ErhI CCWWGG 2 cut(s) 232, 276
FaeI CATG 8 cut(s) 330, 343, 488, 493, 731, 851, 953, 1190
FaqI GGGAC 5 cut(s) 161, 386, 635, 745, 1294
FatI CATG 8 cut(s) 326, 339, 484, 489, 727, 847, 949, 1186
FauI CCCGC 2 cut(s) 771, 1313
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 266
FokI GGATG 6 cut(s) 199, 453, 701, 821, 1181, 1323
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 6 cut(s) 513, 659, 842, 870, 1077, 1274
GluI GCNGC 1 cut(s) 266
GsuI CTGGAG 1 cut(s) 1005
HaeIII GGCC 3 cut(s) 974, 1086, 1219
HapII CCGG 3 cut(s) 46, 404, 1137
HgaI GACGC 2 cut(s) 516, 947
Hin1II CATG 8 cut(s) 330, 343, 488, 493, 731, 851, 953, 1190
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 4 cut(s) 237, 609, 987, 1292
HpaI GTTAAC 1 cut(s) 664
HpaII CCGG 3 cut(s) 46, 404, 1137
HphI GGTGA 5 cut(s) 150, 1126, 1151, 1257, 1315
Hpy166II GTNNAC 3 cut(s) 336, 664, 681
Hpy188I TCNGA 7 cut(s) 52, 121, 175, 259, 565, 735, 1023
Hpy188III TCNNGA 7 cut(s) 60, 322, 490, 904, 935, 984, 1340
Hpy8I GTNNAC 3 cut(s) 336, 664, 681
Hpy99I CGWCG 1 cut(s) 532
HpyAV CCTTC 6 cut(s) 743, 817, 952, 954, 986, 1076
HpyCH4III ACNGT 1 cut(s) 649
HpyCH4V TGCA 6 cut(s) 370, 681, 692, 894, 1104, 1257
HpyF10VI GCNNNNNNNGC 1 cut(s) 599
HpyF3I CTNAG 9 cut(s) 23, 92, 256, 287, 305, 394, 954, 993, 1235
Hsp92II CATG 8 cut(s) 330, 343, 488, 493, 731, 851, 953, 1190
KspAI GTTAAC 1 cut(s) 664
KspI CCGCGG 1 cut(s) 767
Kzo9I GATC 6 cut(s) 16, 408, 435, 492, 1047, 1245
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 4 cut(s) 184, 198, 946, 1078
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 5 cut(s) 166, 318, 529, 679, 807
MaeI CTAG 6 cut(s) 513, 659, 842, 870, 1077, 1274
MaeIII GTNAC 4 cut(s) 136, 290, 988, 1139
MalI GATC 6 cut(s) 18, 410, 437, 494, 1049, 1247
MbiI CCGCTC 1 cut(s) 1320
MboI GATC 6 cut(s) 16, 408, 435, 492, 1047, 1245
MboII GAAGA 4 cut(s) 455, 650, 655, 1042
MhlI GDGCHC 3 cut(s) 393, 683, 1075
MluCI AATT 5 cut(s) 448, 532, 668, 740, 1114
MlyI GAGTC 2 cut(s) 618, 996
MmeI TCCRAC 1 cut(s) 220
Mph1103I ATGCAT 1 cut(s) 694
MroXI GAANNNNTTC 1 cut(s) 1096
MseI TTAA 4 cut(s) 555, 663, 701, 1158
MslI CAYNNNNRTG 3 cut(s) 222, 803, 1341
MspA1I CMGCKG 2 cut(s) 766, 1298
MspI CCGG 3 cut(s) 46, 404, 1137
MspR9I CCNGG 5 cut(s) 404, 471, 1204, 1221, 1269
Mva1269I GAATGC 1 cut(s) 692
MvaI CCWGG 4 cut(s) 471, 1204, 1221, 1269
MvnI CGCG 1 cut(s) 766
MwoI GCNNNNNNNGC 1 cut(s) 599
NciI CCSGG 1 cut(s) 404
NdeII GATC 6 cut(s) 16, 408, 435, 492, 1047, 1245
NlaIII CATG 8 cut(s) 330, 343, 488, 493, 731, 851, 953, 1190
NlaIV GGNNCC 5 cut(s) 6, 252, 651, 1093, 1201
NmeAIII GCCGAG 1 cut(s) 526
NmuCI GTSAC 2 cut(s) 988, 1139
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 2 cut(s) 953, 1190
OliI CACNNNNGTG 1 cut(s) 222
PaeI GCATGC 1 cut(s) 1190
PagI TCATGA 1 cut(s) 489
PciSI GCTCTTC 1 cut(s) 468
PctI GAATGC 1 cut(s) 692
PdmI GAANNNNTTC 1 cut(s) 1096
PfeI GAWTC 2 cut(s) 237, 1292
PflFI GACNNNGTC 1 cut(s) 485
PfoI TCCNGGA 1 cut(s) 402
PinAI ACCGGT 1 cut(s) 1136
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 2 cut(s) 617, 995
PpsI GAGTC 2 cut(s) 617, 995
PpuMI RGGWCCY 1 cut(s) 817
PsiI TTATAA 1 cut(s) 425
Psp5II RGGWCCY 1 cut(s) 817
Psp6I CCWGG 4 cut(s) 469, 1202, 1219, 1267
PspGI CCWGG 4 cut(s) 469, 1202, 1219, 1267
PspN4I GGNNCC 5 cut(s) 6, 252, 651, 1093, 1201
PspPI GGNCC 4 cut(s) 48, 649, 817, 973
PspPPI RGGWCCY 1 cut(s) 817
PstNI CAGNNNCTG 1 cut(s) 1027
PsyI GACNNNGTC 1 cut(s) 485
RsaI GTAC 1 cut(s) 856
RsaNI GTAC 1 cut(s) 855
RseI CAYNNNNRTG 3 cut(s) 222, 803, 1341
Rsr2I CGGWCCG 1 cut(s) 48
RsrII CGGWCCG 1 cut(s) 48
SacII CCGCGG 1 cut(s) 767
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 4 cut(s) 555, 663, 701, 1158
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 6 cut(s) 16, 408, 435, 492, 1047, 1245
Sau96I GGNCC 4 cut(s) 48, 649, 817, 973
SchI GAGTC 2 cut(s) 618, 996
ScrFI CCNGG 5 cut(s) 404, 471, 1204, 1221, 1269
SduI GDGCHC 3 cut(s) 393, 683, 1075
SfaNI GCATC 5 cut(s) 166, 318, 529, 679, 807
SfcI CTRYAG 2 cut(s) 595, 910
Sfr303I CCGCGG 1 cut(s) 767
SgrAI CRCCGGYG 1 cut(s) 1136
SgrBI CCGCGG 1 cut(s) 767
SinI GGWCC 3 cut(s) 48, 649, 817
SmiMI CAYNNNNRTG 3 cut(s) 222, 803, 1341
SmlI CTYRAG 1 cut(s) 1144
SmoI CTYRAG 1 cut(s) 1144
SpeI ACTAGT 1 cut(s) 841
SphI GCATGC 1 cut(s) 1190
Sse9I AATT 5 cut(s) 448, 532, 668, 740, 1114
SsiI CCGC 5 cut(s) 753, 764, 766, 1296, 1320
SspMI CTAG 6 cut(s) 513, 659, 842, 870, 1077, 1274
StyD4I CCNGG 5 cut(s) 402, 469, 1202, 1219, 1267
StyI CCWWGG 2 cut(s) 232, 276
TaaI ACNGT 1 cut(s) 649
TaqI TCGA 2 cut(s) 530, 537
TasI AATT 5 cut(s) 448, 532, 668, 740, 1114
TfiI GAWTC 2 cut(s) 237, 1292
Tru1I TTAA 4 cut(s) 555, 663, 701, 1158
Tru9I TTAA 4 cut(s) 555, 663, 701, 1158
TscAI CASTG 4 cut(s) 481, 997, 1075, 1111
TseFI GTSAC 2 cut(s) 988, 1139
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 2 cut(s) 988, 1139
TspRI CASTG 4 cut(s) 481, 997, 1075, 1111
Tth111I GACNNNGTC 1 cut(s) 485
VneI GTGCAC 1 cut(s) 679
VpaK11BI GGWCC 3 cut(s) 48, 649, 817
XagI CCTNNNNNAGG 3 cut(s) 259, 824, 1080
XapI RAATTY 3 cut(s) 532, 668, 740
XceI RCATGY 2 cut(s) 953, 1190
XmiI GTMKAC 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 1096
XspI CTAG 6 cut(s) 513, 659, 842, 870, 1077, 1274
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.