RLG00000023016

Stachyose

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
16692984 .. 16694693
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023016

Sequence Viewer

Length: 1407 bp
ATGGCACCTCCTAATGATCCCCTTAGTCCAGTTTTCAAGGCGTTCCGGTCCGAGAGTTCTGGACAATACTTTGACCTCTCTAATGGAAGGCTTAGTGTCAAAGGTGTTCCATTGCTCTCTGAAGTTCCAAGCAATGCAACTTTCAGGGACTTCCACTCAGCCTGCCAATCCTCTGATGCTCCACTTCCTCTGCTCCAACGGGTTCGTGCTTCGTCCCACAAGGGTGCTTTCCTTGGATTCAACAAGGAGGTTCCCTCAGATAGGCTGCTCAACTCCTTGGGGAAACTCAATGTCCCGGAGATCAAGTCCTATGTTATAATCATACCCATCATTGAAGCCAATTTCAGGTCTGCTCTTCATCCTGGCAGTGATGACCATGTCATGATCTGTGCCGAGAGTGGTTCTAGTCAAGTAAAAGCGTCGAATTTTGATGCCATTGCTTATGTTCATGCTTCTGACAATCCCTACAACTTGATGAAAGAAGCCTATAGTGCTGTTAGAGTCCATCTCAATAGTTTTAGGCTCTTGGAAGAGAAGACGGTCCCAAATCTAGTTAACAAATTCGGTTGGTGCACTTGGGATGCATTCTACTTAAATGTAGAACCTGTTGGTGTCTGGCATGGTCTGAATGAATTTATTGAAGGCGGTGTGTCCCCACGGTTTCTCATCATTGATGATGGAGGAAACGGAAAAACCAGTTCATGCCTTCATGGTGGTACTAAAATGATTGCTAGGCTTCACGGGTTTGAGGAGTGCAAGAAGTTCAGGAACTACAGAGGTGGGTCTATGTTGGGTCTTGACGGTCCGTCATTTGATCCCAAAAAGCCAAAACAGTTGATTGCCAAGGCTATTGAAATCGAGCATGCTGAGAAGGATCGTGACAAGGCCCTTCATTCTGGAGTAACTGAGTTGTCTGTGTTTGAAACTAAACTTCAGAAGCTGAAGATAGAGTTGAATGAGATCATTGGTGGAGGAGAGAGCAGTGCTCCTAGTGACGGCCGTGGAAGCAGTTCTTGCAGTGATGAAAATTATGGAAAGAAGGCTTTCACCGGTGACTTGAGAACCAAGTTTAAAGGTTTGGATGATATATATGTATGGCCGCCAGGTTCAACTCATCTCAGTTCAAAGATCATTCCTTGCAAAGTCTCACCTGGACTAGACGGGACAGTGAATGATTCCGCTGTGGTGAAAATCGTTGAGAGCGGGATTGGGCTTGTTCATCCTGATCAAGCTGATAGTTTCTATGACTCCATGCACTCTTATCTATCTGAAGTCGGTACCACTGGAGTTAAAGTGGATGCTATTCATACTCTTGAATATGTATGCGAGGAATACGGAGGGCGTGTGGAGCTTGCAAAGGCTTATTACAAGGGGCTGACTCATTCTCTTCAGAAGAACTTCAAATAG
Functional Annotation

Protein Analysis

469

Amino Acids

51.16

Weight (kDa)

6.47

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Raffinose_syn PF05691 100 - 468 9.4e-106 Raffinose synthase or seed imbibition protein Sip1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
Acc65I GGTACC 1 cut(s) 1277
AccB1I GGYRCC 2 cut(s) 4, 1277
AccBSI CCGCTC 1 cut(s) 1203
AciI CCGC 4 cut(s) 645, 1100, 1179, 1203
AclWI GGATC 3 cut(s) 11, 809, 882
AcoI YGGCCR 2 cut(s) 997, 1097
AcsI RAATTY 3 cut(s) 424, 560, 632
AcuI CTGAAG 5 cut(s) 141, 917, 962, 1290, 1373
AfaI GTAC 2 cut(s) 718, 1279
AfiI CCNNNNNNNGG 3 cut(s) 261, 345, 995
AgeI ACCGGT 1 cut(s) 1049
AhdI GACNNNNNGTC 1 cut(s) 805
AjnI CCWGG 3 cut(s) 361, 1102, 1150
AleI CACNNNNGTG 1 cut(s) 222
AluBI AGCT 3 cut(s) 940, 1232, 1351
AluI AGCT 3 cut(s) 940, 1232, 1351
Alw21I GWGCWC 2 cut(s) 575, 988
Alw26I GTCTC 1 cut(s) 1150
Alw44I GTGCAC 1 cut(s) 571
AlwI GGATC 3 cut(s) 11, 809, 882
AlwNI CAGNNNCTG 1 cut(s) 940
AoxI GGCC 3 cut(s) 885, 997, 1097
ApaLI GTGCAC 1 cut(s) 571
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 3 cut(s) 424, 560, 632
AsiGI ACCGGT 1 cut(s) 1049
Asp700I GAANNNNTTC 3 cut(s) 1009, 1043, 1397
Asp718I GGTACC 1 cut(s) 1277
AspS9I GGNCC 4 cut(s) 48, 541, 803, 886
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 4 cut(s) 1039, 1064, 1140, 1198
AvaII GGWCC 3 cut(s) 48, 541, 803
BaeGI GKGCMC 1 cut(s) 575
BanI GGYRCC 2 cut(s) 4, 1277
BbsI GAAGAC 1 cut(s) 542
Bbv12I GWGCWC 2 cut(s) 575, 988
BbvI GCAGC 1 cut(s) 252
BccI CCATC 3 cut(s) 335, 513, 671
BceAI ACGGC 2 cut(s) 984, 1012
BciT130I CCWGG 3 cut(s) 363, 1104, 1152
BclI TGATCA 1 cut(s) 1225
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 1150
BfaI CTAG 5 cut(s) 405, 551, 732, 990, 1157
BfmI CTRYAG 2 cut(s) 487, 772
BisI GCNGC 2 cut(s) 266, 1100
BlsI GCNGC 2 cut(s) 267, 1101
Bme1390I CCNGG 4 cut(s) 296, 363, 1104, 1152
Bme18I GGWCC 3 cut(s) 48, 541, 803
BmeRI GACNNNNNGTC 1 cut(s) 805
BmgT120I GGNCC 4 cut(s) 48, 541, 803, 886
BmiI GGNNCC 4 cut(s) 6, 252, 543, 1279
BmrFI CCNGG 4 cut(s) 296, 363, 1104, 1152
BmsI GCATC 4 cut(s) 166, 421, 571, 1288
BpiI GAAGAC 1 cut(s) 542
BplI GAGNNNNNCTC 6 cut(s) 239, 271, 492, 524, 970, 1002
BpmI CTGGAG 2 cut(s) 918, 1305
BpuEI CTTGAG 1 cut(s) 1078
BpuMI CCSGG 1 cut(s) 296
BsaJI CCNNGG 5 cut(s) 232, 276, 656, 843, 1000
BsaWI WCCGGW 2 cut(s) 45, 1049
BsaXI ACNNNNNCTCC 6 cut(s) 290, 320, 1278, 1308, 1329, 1359
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 345, 995
Bse118I RCCGGY 1 cut(s) 1049
Bse1I ACTGG 3 cut(s) 29, 696, 1288
Bse3DI GCAATG 3 cut(s) 110, 139, 435
BseBI CCWGG 3 cut(s) 363, 1104, 1152
BseDI CCNNGG 5 cut(s) 232, 276, 656, 843, 1000
BseGI GGATG 5 cut(s) 358, 586, 1087, 1219, 1303
BseLI CCNNNNNNNGG 3 cut(s) 261, 345, 995
BseMI GCAATG 3 cut(s) 110, 139, 435
BseMII CTCAG 5 cut(s) 171, 270, 858, 897, 1132
BseNI ACTGG 3 cut(s) 29, 696, 1288
BseRI GAGGAG 2 cut(s) 764, 987
BseSI GKGCMC 1 cut(s) 575
BseX3I CGGCCG 1 cut(s) 997
BseXI GCAGC 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 1000
BshFI GGCC 3 cut(s) 887, 999, 1099
BshNI GGYRCC 2 cut(s) 4, 1277
BshTI ACCGGT 1 cut(s) 1049
BsiEI CGRYCG 1 cut(s) 1000
BsiHKAI GWGCWC 2 cut(s) 575, 988
BsiSI CCGG 3 cut(s) 46, 296, 1050
BslFI GGGAC 6 cut(s) 161, 199, 278, 527, 637, 1177
BslI CCNNNNNNNGG 3 cut(s) 261, 345, 995
BsmAI GTCTC 1 cut(s) 1150
BsmFI GGGAC 6 cut(s) 161, 199, 278, 527, 637, 1177
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 3 cut(s) 887, 999, 1099
Bsp1286I GDGCHC 2 cut(s) 575, 988
Bsp143I GATC 8 cut(s) 16, 300, 384, 814, 874, 960, 1128, 1225
BspACI CCGC 4 cut(s) 645, 1100, 1179, 1203
BspANI GGCC 3 cut(s) 887, 999, 1099
BspCNI CTCAG 5 cut(s) 170, 269, 859, 898, 1131
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 4 cut(s) 6, 252, 543, 1279
BspPI GGATC 3 cut(s) 11, 809, 882
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 2 cut(s) 4, 1277
BsrBI CCGCTC 1 cut(s) 1203
BsrDI GCAATG 3 cut(s) 110, 139, 435
BsrFI RCCGGY 1 cut(s) 1049
BsrI ACTGG 3 cut(s) 29, 696, 1288
BssAI RCCGGY 1 cut(s) 1049
BssECI CCNNGG 5 cut(s) 232, 276, 656, 843, 1000
BssMI GATC 8 cut(s) 16, 300, 384, 814, 874, 960, 1128, 1225
BssT1I CCWWGG 3 cut(s) 232, 276, 843
Bst2UI CCWGG 3 cut(s) 363, 1104, 1152
Bst4CI ACNGT 5 cut(s) 541, 660, 803, 834, 1168
Bst6I CTCTTC 3 cut(s) 360, 525, 1392
BstAPI GCANNNNNTGC 1 cut(s) 1014
BstC8I GCNNGC 3 cut(s) 163, 864, 1353
BstDEI CTNAG 7 cut(s) 23, 92, 157, 256, 867, 906, 1118
BstDSI CCRYGG 2 cut(s) 656, 1000
BstENI CCTNNNNNAGG 1 cut(s) 259
BstF5I GGATG 5 cut(s) 358, 586, 1087, 1219, 1303
BstKTI GATC 8 cut(s) 19, 303, 387, 817, 877, 963, 1131, 1228
BstMAI GTCTC 1 cut(s) 1150
BstMBI GATC 8 cut(s) 16, 300, 384, 814, 874, 960, 1128, 1225
BstMCI CGRYCG 1 cut(s) 1000
BstMWI GCNNNNNNNGC 4 cut(s) 491, 1005, 1014, 1348
BstNI CCWGG 3 cut(s) 363, 1104, 1152
BstNSI RCATGY 1 cut(s) 866
BstSCI CCNGG 4 cut(s) 294, 361, 1102, 1150
BstSFI CTRYAG 2 cut(s) 487, 772
BstSLI GKGCMC 1 cut(s) 575
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 542
BstZI CGGCCG 1 cut(s) 997
BsuRI GGCC 3 cut(s) 887, 999, 1099
BtgI CCRYGG 2 cut(s) 656, 1000
BtsCI GGATG 5 cut(s) 358, 586, 1087, 1219, 1303
BtsI GCAGTG 3 cut(s) 373, 988, 1024
BtsIMutI CAGTG 5 cut(s) 373, 988, 1024, 1173, 1281
Cac8I GCNNGC 3 cut(s) 163, 864, 1353
CaiI CAGNNNCTG 1 cut(s) 940
CciI TCATGA 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 1049
Cfr13I GGNCC 4 cut(s) 48, 541, 803, 886
CpoI CGGWCCG 2 cut(s) 48, 803
CseI GACGC 1 cut(s) 408
Csp6I GTAC 2 cut(s) 717, 1278
CspAI ACCGGT 1 cut(s) 1049
CspI CGGWCCG 2 cut(s) 48, 803
CviAII CATG 8 cut(s) 377, 382, 449, 620, 702, 710, 863, 1252
CviQI GTAC 2 cut(s) 717, 1278
DdeI CTNAG 7 cut(s) 23, 92, 157, 256, 867, 906, 1118
DpnI GATC 8 cut(s) 18, 302, 386, 816, 876, 962, 1130, 1227
DpnII GATC 8 cut(s) 16, 300, 384, 814, 874, 960, 1128, 1225
DraI TTTAAA 1 cut(s) 1072
DriI GACNNNNNGTC 1 cut(s) 805
EaeI YGGCCR 2 cut(s) 997, 1097
EagI CGGCCG 1 cut(s) 997
Eam1104I CTCTTC 3 cut(s) 360, 525, 1392
Eam1105I GACNNNNNGTC 1 cut(s) 805
EarI CTCTTC 3 cut(s) 360, 525, 1392
EclXI CGGCCG 1 cut(s) 997
Eco130I CCWWGG 3 cut(s) 232, 276, 843
Eco47I GGWCC 3 cut(s) 48, 541, 803
Eco52I CGGCCG 1 cut(s) 997
Eco57I CTGAAG 5 cut(s) 141, 917, 962, 1290, 1373
EcoNI CCTNNNNNAGG 1 cut(s) 259
EcoO109I RGGNCCY 1 cut(s) 886
EcoRII CCWGG 3 cut(s) 361, 1102, 1150
EcoT14I CCWWGG 3 cut(s) 232, 276, 843
EcoT22I ATGCAT 1 cut(s) 586
ErhI CCWWGG 3 cut(s) 232, 276, 843
FaeI CATG 8 cut(s) 380, 385, 452, 623, 705, 713, 866, 1255
FalI AAGNNNNNCTT 2 cut(s) 997, 1029
FaqI GGGAC 6 cut(s) 161, 199, 278, 527, 637, 1177
FatI CATG 8 cut(s) 376, 381, 448, 619, 701, 709, 862, 1251
FauI CCCGC 1 cut(s) 1196
FbaI TGATCA 1 cut(s) 1225
Fnu4HI GCNGC 2 cut(s) 266, 1100
FokI GGATG 5 cut(s) 345, 593, 1094, 1206, 1310
Fsp4HI GCNGC 2 cut(s) 266, 1100
FspBI CTAG 5 cut(s) 405, 551, 732, 990, 1157
GluI GCNGC 2 cut(s) 266, 1100
GsuI CTGGAG 2 cut(s) 918, 1305
HaeIII GGCC 3 cut(s) 887, 999, 1099
HapII CCGG 3 cut(s) 46, 296, 1050
HgaI GACGC 1 cut(s) 408
Hin1II CATG 8 cut(s) 380, 385, 452, 623, 705, 713, 866, 1255
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 5 cut(s) 237, 501, 1175, 1247, 1378
HpaI GTTAAC 1 cut(s) 556
HpaII CCGG 3 cut(s) 46, 296, 1050
HphI GGTGA 4 cut(s) 1039, 1064, 1140, 1198
Hpy166II GTNNAC 2 cut(s) 556, 573
Hpy188I TCNGA 9 cut(s) 52, 121, 175, 259, 457, 627, 936, 1270, 1392
Hpy188III TCNNGA 8 cut(s) 60, 382, 766, 797, 878, 897, 1223, 1313
Hpy8I GTNNAC 2 cut(s) 556, 573
Hpy99I CGWCG 1 cut(s) 424
HpyAV CCTTC 6 cut(s) 81, 635, 716, 865, 899, 1033
HpyCH4III ACNGT 5 cut(s) 541, 660, 803, 834, 1168
HpyCH4V TGCA 8 cut(s) 137, 573, 584, 756, 1017, 1140, 1255, 1355
HpyF10VI GCNNNNNNNGC 4 cut(s) 491, 1005, 1014, 1348
HpyF3I CTNAG 7 cut(s) 23, 92, 157, 256, 867, 906, 1118
Hsp92II CATG 8 cut(s) 380, 385, 452, 623, 705, 713, 866, 1255
KpnI GGTACC 1 cut(s) 1281
Ksp22I TGATCA 1 cut(s) 1225
KspAI GTTAAC 1 cut(s) 556
Kzo9I GATC 8 cut(s) 16, 300, 384, 814, 874, 960, 1128, 1225
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 4 cut(s) 184, 198, 991, 1348
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 4 cut(s) 166, 421, 571, 1288
MaeI CTAG 5 cut(s) 405, 551, 732, 990, 1157
MaeIII GTNAC 4 cut(s) 878, 901, 992, 1052
MalI GATC 8 cut(s) 18, 302, 386, 816, 876, 962, 1130, 1227
MbiI CCGCTC 1 cut(s) 1203
MboI GATC 8 cut(s) 16, 300, 384, 814, 874, 960, 1128, 1225
MboII GAAGA 6 cut(s) 347, 542, 547, 955, 1379, 1405
MhlI GDGCHC 2 cut(s) 575, 988
MluCI AATT 5 cut(s) 340, 424, 560, 632, 1027
MlyI GAGTC 3 cut(s) 510, 1241, 1372
MmeI TCCRAC 1 cut(s) 220
Mph1103I ATGCAT 1 cut(s) 586
MroXI GAANNNNTTC 3 cut(s) 1009, 1043, 1397
MseI TTAA 4 cut(s) 555, 593, 1071, 1290
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 1181
MspI CCGG 3 cut(s) 46, 296, 1050
MspR9I CCNGG 4 cut(s) 296, 363, 1104, 1152
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 3 cut(s) 363, 1104, 1152
MwoI GCNNNNNNNGC 4 cut(s) 491, 1005, 1014, 1348
NciI CCSGG 1 cut(s) 296
NdeII GATC 8 cut(s) 16, 300, 384, 814, 874, 960, 1128, 1225
NlaIII CATG 8 cut(s) 380, 385, 452, 623, 705, 713, 866, 1255
NlaIV GGNNCC 4 cut(s) 6, 252, 543, 1279
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 3 cut(s) 878, 992, 1052
NsiI ATGCAT 1 cut(s) 586
NspI RCATGY 1 cut(s) 866
OliI CACNNNNGTG 1 cut(s) 222
PaeI GCATGC 1 cut(s) 866
PagI TCATGA 1 cut(s) 381
PciSI GCTCTTC 1 cut(s) 360
PctI GAATGC 1 cut(s) 584
PdmI GAANNNNTTC 3 cut(s) 1009, 1043, 1397
PfeI GAWTC 2 cut(s) 237, 1175
PflFI GACNNNGTC 1 cut(s) 377
PfoI TCCNGGA 1 cut(s) 294
PinAI ACCGGT 1 cut(s) 1049
PkrI GCNGC 2 cut(s) 267, 1101
PleI GAGTC 3 cut(s) 509, 1241, 1372
PpsI GAGTC 3 cut(s) 509, 1241, 1372
PsiI TTATAA 1 cut(s) 317
Psp6I CCWGG 3 cut(s) 361, 1102, 1150
PspGI CCWGG 3 cut(s) 361, 1102, 1150
PspN4I GGNNCC 4 cut(s) 6, 252, 543, 1279
PspPI GGNCC 4 cut(s) 48, 541, 803, 886
PstNI CAGNNNCTG 1 cut(s) 940
PsyI GACNNNGTC 1 cut(s) 377
RsaI GTAC 2 cut(s) 718, 1279
RsaNI GTAC 2 cut(s) 717, 1278
RseI CAYNNNNRTG 1 cut(s) 222
Rsr2I CGGWCCG 2 cut(s) 48, 803
RsrII CGGWCCG 2 cut(s) 48, 803
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 4 cut(s) 555, 593, 1071, 1290
SatI GCNGC 2 cut(s) 266, 1100
Sau3AI GATC 8 cut(s) 16, 300, 384, 814, 874, 960, 1128, 1225
Sau96I GGNCC 4 cut(s) 48, 541, 803, 886
SchI GAGTC 3 cut(s) 510, 1241, 1372
ScrFI CCNGG 4 cut(s) 296, 363, 1104, 1152
SduI GDGCHC 2 cut(s) 575, 988
SfaNI GCATC 4 cut(s) 166, 421, 571, 1288
SfcI CTRYAG 2 cut(s) 487, 772
SgrAI CRCCGGYG 1 cut(s) 1049
SinI GGWCC 3 cut(s) 48, 541, 803
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 1057
SmoI CTYRAG 1 cut(s) 1057
SphI GCATGC 1 cut(s) 866
Sse9I AATT 5 cut(s) 340, 424, 560, 632, 1027
SsiI CCGC 4 cut(s) 645, 1100, 1179, 1203
SspMI CTAG 5 cut(s) 405, 551, 732, 990, 1157
StyD4I CCNGG 4 cut(s) 294, 361, 1102, 1150
StyI CCWWGG 3 cut(s) 232, 276, 843
TaaI ACNGT 5 cut(s) 541, 660, 803, 834, 1168
TaqI TCGA 2 cut(s) 422, 858
TasI AATT 5 cut(s) 340, 424, 560, 632, 1027
TauI GCSGC 1 cut(s) 1102
TfiI GAWTC 2 cut(s) 237, 1175
Tru1I TTAA 4 cut(s) 555, 593, 1071, 1290
Tru9I TTAA 4 cut(s) 555, 593, 1071, 1290
TscAI CASTG 5 cut(s) 373, 988, 1024, 1173, 1288
TseFI GTSAC 3 cut(s) 878, 992, 1052
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 3 cut(s) 878, 992, 1052
TspGWI ACGGA 3 cut(s) 702, 795, 1350
TspRI CASTG 5 cut(s) 373, 988, 1024, 1173, 1288
Tth111I GACNNNGTC 1 cut(s) 377
VneI GTGCAC 1 cut(s) 571
VpaK11BI GGWCC 3 cut(s) 48, 541, 803
XagI CCTNNNNNAGG 1 cut(s) 259
XapI RAATTY 3 cut(s) 424, 560, 632
XceI RCATGY 1 cut(s) 866
XmnI GAANNNNTTC 3 cut(s) 1009, 1043, 1397
XspI CTAG 5 cut(s) 405, 551, 732, 990, 1157
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.