Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002574

Physical Location & Seq

Genomic Coordinates Reverse (-)

26781980 .. 26785633

Gene Structure 3654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G306100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGACAGCATGAACAGCTTTTGGCAATTGGGTGATGAGCTTCGAGGACAGTCAAAAGTCGCAGAAGATCAAAAATGGTTTATGGCCGCTTCAAAGTTGGCTGAGCAGACAAGGGTAAAGGGCGAGCGTATGAATAACCTTGATCTTTCAAAGGGCCCAGCCGAGACAAGGGCAAGGGATAAATTTGGGTTCCAGGAAGATAACAAATTTGAAAGCCTTAACTTTAATATGCTGAGCTTGGACTCTAAAGTAAATGAAAATGTGAGCAAAAGTTCCTTTAGGAATGGTATTTATAACATGAATGCAGTTTACCAGAAAAACAATGCAAGTGTTGTGGGAAACATGACTGGTAACAAGTACAGCAACAAAGAAATCAACAACAGCAATATCAACAATGAATCTGCAAATACAGTTGAAAAAAGGTTCAAGACCTTGCCGGCAACCGAGACGCTCCCGAGAAATGAGGTGCTTGGAGGTTACATCTTTGTGTGTAACAATGACACAATGCAGGAGGATTTAAAGCGACAATTATTTGGTTTACCTCCAAGATATAGGGATTCTGTTCGGGCAATAACACCAGGCTTGCCTTTGTTTCTCTACAACTATACAACACACCAACTGCATGGCATTTTCGAGGCAGCAAGCTTTGGTGGTTCAAACATTGATCCAACTGCTTGGGAAGACAAGAAATGTAAAGGCGAGTCGAGATTTCCTGCTCAGGTAAGGATCCGCGTTAGGAAACTCTGCAAGGCTTTGGAAGAAGATGCCTTCAGGCCAGTCTTGCACCACTATGATGGTCCCAAGTTTCGTCTTGAGCTGTCAATTCCTGAGACCCTGGATCTATTGGACCTATGCGAACAAGCGGGCTCTGCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

293

Amino Acids

33.14

Weight (kDa)

7.64

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27090 AT3G27090 AT3G27090
fragaria_vesca	FvH4_6g53510 FvH4_6g53510 FvH4_6g53510
malus_domestica	MD00G1139300.v1.1 MD09G1011000.v1.1
prunus_persica	Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.8G002400_v2.0.a1
pyrus_communis	pycom111g00920 pycom17g00940
rosa_chinensis	RchiOBHm_Chr2g0175541 RchiOBHm_Chr6g0249531
rosa_laevigata	RLG00000015572 RLG00000022337
rosa_multiflora	Rmu_co8403361.1_g000001 Rmu_sc0008219.1_g000003 Rmu_sc0021955.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217590
rosa_rugosa	Rorug02G0586000 Rorug02G0586100 Rorug02G0586200 Rorug02G0586300 Rorug02G0586400 Rorug02G0586500 Rorug05G0493300
rosa_samantha	Rh2AG665200 Rh2BG676000 Rh2CG639200 Rh2DG690000 Rh6AG003000 Rh6BG007100 Rh6CG002000 Rh6DG002000
rosa_wichuraiana	Rw2G054530 Rw6G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AccII	CGCG	1 cut(s)	732
AciI	CCGC	3 cut(s)	87, 730, 863
AclWI	GGATC	4 cut(s)	659, 721, 734, 846
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	182, 206
AcuI	CTGAAG	1 cut(s)	754
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	6 cut(s)	93, 150, 212, 416, 427, 657
AjnI	CCWGG	3 cut(s)	192, 577, 834
AluBI	AGCT	5 cut(s)	18, 40, 237, 645, 817
AluI	AGCT	5 cut(s)	18, 40, 237, 645, 817
Alw26I	GTCTC	3 cut(s)	158, 440, 824
AlwI	GGATC	4 cut(s)	659, 721, 734, 846
Ama87I	CYCGRG	1 cut(s)	454
AoxI	GGCC	3 cut(s)	84, 154, 773
ApaI	GGGCCC	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	638, 872
ApoI	RAATTY	2 cut(s)	182, 206
AspS9I	GGNCC	4 cut(s)	154, 155, 797, 847
AsuHPI	GGTGA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	454
AvaII	GGWCC	2 cut(s)	797, 847
BaeGI	GKGCMC	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	726
BanII	GRGCYC	2 cut(s)	158, 869
BbsI	GAAGAC	1 cut(s)	687
BbvI	GCAGC	1 cut(s)	650
BccI	CCATC	1 cut(s)	788
BciT130I	CCWGG	3 cut(s)	194, 579, 836
BcoDI	GTCTC	3 cut(s)	158, 440, 824
BfmI	CTRYAG	1 cut(s)	870
BisI	GCNGC	3 cut(s)	87, 639, 873
BlpI	GCTNAGC	2 cut(s)	102, 233
BlsI	GCNGC	3 cut(s)	88, 640, 874
Bme1390I	CCNGG	3 cut(s)	194, 579, 836
Bme18I	GGWCC	2 cut(s)	797, 847
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	4 cut(s)	154, 155, 797, 847
BmiI	GGNNCC	4 cut(s)	156, 191, 728, 799
BmrFI	CCNGG	3 cut(s)	194, 579, 836
BmsI	GCATC	1 cut(s)	754
BpiI	GAAGAC	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	717
Bpu1102I	GCTNAGC	2 cut(s)	102, 233
BpuEI	CTTGAG	1 cut(s)	833
BsaI	GGTCTC	1 cut(s)	824
BsaJI	CCNNGG	1 cut(s)	834
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	2 cut(s)	352, 776
BseBI	CCWGG	3 cut(s)	194, 579, 836
BseDI	CCNNGG	1 cut(s)	834
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMII	CTCAG	4 cut(s)	93, 224, 731, 819
BseNI	ACTGG	2 cut(s)	352, 776
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	650
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	732
BshFI	GGCC	3 cut(s)	86, 156, 775
BsiHKCI	CYCGRG	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	437
BslFI	GGGAC	1 cut(s)	783
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	3 cut(s)	158, 440, 824
BsmBI	CGTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	783
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	86, 156, 775
Bso31I	GGTCTC	1 cut(s)	824
BsoBI	CYCGRG	1 cut(s)	454
Bsp120I	GGGCCC	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	158, 869
Bsp143I	GATC	5 cut(s)	67, 142, 664, 726, 838
Bsp1720I	GCTNAGC	2 cut(s)	102, 233
BspACI	CCGC	3 cut(s)	87, 730, 863
BspANI	GGCC	3 cut(s)	86, 156, 775
BspCNI	CTCAG	4 cut(s)	94, 225, 730, 820
BspFNI	CGCG	1 cut(s)	732
BspLI	GGNNCC	4 cut(s)	156, 191, 728, 799
BspMAI	CTGCAG	1 cut(s)	874
BspPI	GGATC	4 cut(s)	659, 721, 734, 846
BspTNI	GGTCTC	1 cut(s)	824
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	2 cut(s)	352, 776
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	1 cut(s)	834
BssMI	GATC	5 cut(s)	67, 142, 664, 726, 838
Bst2UI	CCWGG	3 cut(s)	194, 579, 836
Bst4CI	ACNGT	2 cut(s)	51, 412
BstC8I	GCNNGC	5 cut(s)	125, 438, 584, 643, 865
BstDEI	CTNAG	4 cut(s)	102, 233, 717, 828
BstFNI	CGCG	1 cut(s)	732
BstKTI	GATC	5 cut(s)	70, 145, 667, 729, 841
BstMAI	GTCTC	3 cut(s)	158, 440, 824
BstMBI	GATC	5 cut(s)	67, 142, 664, 726, 838
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 781, 869
BstNI	CCWGG	3 cut(s)	194, 579, 836
BstSCI	CCNGG	3 cut(s)	192, 577, 834
BstSFI	CTRYAG	1 cut(s)	870
BstSLI	GKGCMC	1 cut(s)	158
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	1 cut(s)	650
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	2 cut(s)	726, 838
BstXI	CCANNNNNNTGG	3 cut(s)	623, 675, 794
BstYI	RGATCY	2 cut(s)	726, 838
BsuRI	GGCC	3 cut(s)	86, 156, 775
Cac8I	GCNNGC	5 cut(s)	125, 438, 584, 643, 865
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	4 cut(s)	154, 155, 797, 847
CseI	GACGC	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	358
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	4 cut(s)	10, 298, 343, 623
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	4 cut(s)	102, 233, 717, 828
DpnI	GATC	5 cut(s)	69, 144, 666, 728, 840
DpnII	GATC	5 cut(s)	67, 142, 664, 726, 838
DraI	TTTAAA	1 cut(s)	519
EaeI	YGGCCR	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	158, 869
Eco31I	GGTCTC	1 cut(s)	824
Eco47I	GGWCC	2 cut(s)	797, 847
Eco57I	CTGAAG	1 cut(s)	754
Eco88I	CYCGRG	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	3 cut(s)	192, 577, 834
EcoT38I	GRGCYC	2 cut(s)	158, 869
Esp3I	CGTCTC	1 cut(s)	440
FaeI	CATG	4 cut(s)	13, 301, 346, 626
FaqI	GGGAC	1 cut(s)	783
FatI	CATG	4 cut(s)	9, 297, 342, 622
FauI	CCCGC	1 cut(s)	856
Fnu4HI	GCNGC	3 cut(s)	87, 639, 873
FriOI	GRGCYC	2 cut(s)	158, 869
Fsp4HI	GCNGC	3 cut(s)	87, 639, 873
GluI	GCNGC	3 cut(s)	87, 639, 873
GsaI	CCCAGC	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	86, 156, 775
HapII	CCGG	1 cut(s)	437
HgaI	GACGC	1 cut(s)	457
Hin1II	CATG	4 cut(s)	13, 301, 346, 626
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	4 cut(s)	242, 398, 557, 701
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	310, 539
Hpy188III	TCNNGA	5 cut(s)	427, 454, 705, 812, 827
Hpy8I	GTNNAC	2 cut(s)	310, 539
HpyAV	CCTTC	1 cut(s)	778
HpyCH4III	ACNGT	2 cut(s)	51, 412
HpyCH4V	TGCA	8 cut(s)	305, 326, 404, 508, 622, 747, 784, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 781, 869
HpyF3I	CTNAG	4 cut(s)	102, 233, 717, 828
Hsp92II	CATG	4 cut(s)	13, 301, 346, 626
KroI	GCCGGC	1 cut(s)	436
KroNI	GCCGGC	1 cut(s)	438
Kzo9I	GATC	5 cut(s)	67, 142, 664, 726, 838
LmnI	GCTCC	1 cut(s)	456
Lsp1109I	GCAGC	1 cut(s)	650
LweI	GCATC	1 cut(s)	754
MaeIII	GTNAC	3 cut(s)	350, 476, 491
MalI	GATC	5 cut(s)	69, 144, 666, 728, 840
MboI	GATC	5 cut(s)	67, 142, 664, 726, 838
MboII	GAAGA	5 cut(s)	77, 209, 692, 770, 773
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	2 cut(s)	726, 838
MhlI	GDGCHC	2 cut(s)	158, 869
MluCI	AATT	5 cut(s)	26, 182, 206, 527, 822
MlyI	GAGTC	2 cut(s)	236, 710
MmeI	TCCRAC	1 cut(s)	692
MnlI	CCTC	6 cut(s)	38, 457, 467, 505, 552, 628
MroNI	GCCGGC	1 cut(s)	436
MseI	TTAA	3 cut(s)	219, 225, 518
MslI	CAYNNNNRTG	3 cut(s)	485, 789, 792
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	3 cut(s)	194, 579, 836
MunI	CAATTG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	3 cut(s)	194, 579, 836
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	3 cut(s)	15, 781, 869
NaeI	GCCGGC	1 cut(s)	438
NdeII	GATC	5 cut(s)	67, 142, 664, 726, 838
NgoMIV	GCCGGC	1 cut(s)	436
NlaIII	CATG	4 cut(s)	13, 301, 346, 626
NlaIV	GGNNCC	4 cut(s)	156, 191, 728, 799
NmeAIII	GCCGAG	1 cut(s)	187
PctI	GAATGC	1 cut(s)	307
PdiI	GCCGGC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	398, 557
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	3 cut(s)	88, 640, 874
PleI	GAGTC	2 cut(s)	236, 709
PpsI	GAGTC	2 cut(s)	236, 709
PsiI	TTATAA	1 cut(s)	294
Psp6I	CCWGG	3 cut(s)	192, 577, 834
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	3 cut(s)	192, 577, 834
PspN4I	GGNNCC	4 cut(s)	156, 191, 728, 799
PspOMI	GGGCCC	1 cut(s)	154
PspPI	GGNCC	4 cut(s)	154, 155, 797, 847
PstI	CTGCAG	1 cut(s)	874
PsuI	RGATCY	2 cut(s)	726, 838
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	3 cut(s)	485, 789, 792
SaqAI	TTAA	3 cut(s)	219, 225, 518
SatI	GCNGC	3 cut(s)	87, 639, 873
Sau3AI	GATC	5 cut(s)	67, 142, 664, 726, 838
Sau96I	GGNCC	4 cut(s)	154, 155, 797, 847
SchI	GAGTC	2 cut(s)	236, 710
ScrFI	CCNGG	3 cut(s)	194, 579, 836
SduI	GDGCHC	2 cut(s)	158, 869
SfaNI	GCATC	1 cut(s)	754
SfcI	CTRYAG	1 cut(s)	870
SinI	GGWCC	2 cut(s)	797, 847
SmiMI	CAYNNNNRTG	3 cut(s)	485, 789, 792
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	5 cut(s)	26, 182, 206, 527, 822
SsiI	CCGC	3 cut(s)	87, 730, 863
StyD4I	CCNGG	3 cut(s)	192, 577, 834
TaaI	ACNGT	2 cut(s)	51, 412
TaqI	TCGA	3 cut(s)	43, 633, 704
TasI	AATT	5 cut(s)	26, 182, 206, 527, 822
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	398, 557
Tru1I	TTAA	3 cut(s)	219, 225, 518
Tru9I	TTAA	3 cut(s)	219, 225, 518
TseI	GCWGC	2 cut(s)	638, 872
TspDTI	ATGAA	5 cut(s)	26, 146, 270, 314, 411
VpaK11BI	GGWCC	2 cut(s)	797, 847
XapI	RAATTY	2 cut(s)	182, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.