Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002574

Physical Location & Seq

Genomic Coordinates Forward (+)

70909719 .. 70912203

Gene Structure 2485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0586100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGGATGATCAAACTCAAAGTGGAATATTAGCTCCGGCTGAGGGCGAGAGTAAAGATTGGATAAATGAGCTTCCGGATTGCATTCTGTCATCCATACTTTCATTGTTAACAATAAAAGATGCAGCGGAGACTAGCATTGTATCCCGCCAGTGGAGGAACCTTTGGAAGACAAGGCCCCCCAATCTTGAATTAGACACTGTAAATATTTTTGGGTCCTTGTATGCTCCACTTCTTGAAAGATATAGGTCCATCTATAGTGTTGCATCTTTGAGTCTTCAATTCGAGAGACAGTGCTATATAAAACGTGTGAATGAAGTTTTGGAGCTCTACTCTGGCAACAAGCTAGACTCATTCAAAGTGGCATTCTTTTTTAATCGAGAATTTACTGAAGATCTTGACAAATGGGTTCGTTTTGCAATTACAAAGGGAGCTCAAAAGCTGGATCTTCGATTATTAAGAGGCGCTTTGGATCCATATCATAATTTTTATGTTTTTCCTCACTGGATCCTTGCAGATTTGAACGCATCAACCCTAAAGCATTTGTCGTTGTATCGATGTGTTCTAAAACCTCCTACTGATTTTGACAGATTCATTCAGCTAGAAACTCTTTCTCTGAATGACGTTGTAGTCGATCCAGATTTTTTGGCACGTCTTTTCTCTGCTTGTGTGCTTCTCGAAAGCTTCACCTTGAACACATATGATGTGCGCTCAAATCTGATTATTGGTCCATCGCTTCACCTGCATGATCTGAAAGTGCTCACGTGTTACCGATTAGGAAGAATAGAGATTGATGCAGTAAATCTTTCCTCCTTAGAATATGATGGATCTCATACAGAGATTTCTTTCATGAGAACTCCACGGCTAGTAAGATGTTTTTTTAAGGGATGGTGTATAGGTCCAGTTCCTCATGTGCTAACCCAACTCCCCCTGTGTTCTGAGCTTGGGACTCTTCATCTGCAGCCCAGAGATAATTTCGAACACATACCCCAAACTTTTCCAACATTGAGAAACCTAAAGCAAGTGAAGTTGGATCTCCTCATGCTTGACTTTGAACTTGGGAGTGTTCTAAATATTCTCAAGGCTGCACCTCTTTTGGAAGAACTTATAATAACAACACAAGCTGCAGACTATCACGGAGAGATGAGGAATCTTTCTACATTCTCACATAATCATTTGAGAAAAATAAAGATGCAGGGGTTCCAAGGTATGTGGTTTGAGATAGAGTTCGCCATTTCCATTCTTAAAATTGCAACAAAGCTTGAGGTAATGGTGATTGATCCACATGGATCACTCTACGACGGTGATGGAACTTGGGTCCAAATGACCTGTTGTTATCAGGATGGGAACGAGGATGAGAACCCAGAGGAATATGATGACCCAAGCGATGAAAATGTGGACAATGTGCCGTATGAACTTTTCCGTTGGCAAAAAAGAGGCAGGGCAGCGGTCCAAGAAAGGCTGAAAGATGTAAAGAGTGATGCTCAAATCATCATCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

499

Amino Acids

57.54

Weight (kDa)

5.28

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	21 - 60	1.8e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	107 - 428	2e-39	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	132 - 288	3.2e-08	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27090 AT3G27090 AT3G27090
fragaria_vesca	FvH4_6g53510 FvH4_6g53510 FvH4_6g53510
malus_domestica	MD00G1139300.v1.1 MD09G1011000.v1.1
prunus_persica	Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.8G002400_v2.0.a1
pyrus_communis	pycom111g00920 pycom17g00940
rosa_chinensis	RchiOBHm_Chr2g0175541 RchiOBHm_Chr6g0249531
rosa_laevigata	RLG00000015572 RLG00000022337
rosa_multiflora	Rmu_co8403361.1_g000001 Rmu_sc0008219.1_g000003 Rmu_sc0021955.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217590
rosa_rugosa	Rorug02G0586000 Rorug02G0586100 Rorug02G0586200 Rorug02G0586300 Rorug02G0586400 Rorug02G0586500 Rorug05G0493300
rosa_samantha	Rh2AG665200 Rh2BG676000 Rh2CG639200 Rh2DG690000 Rh6AG003000 Rh6BG007100 Rh6CG002000 Rh6DG002000
rosa_wichuraiana	Rw2G054530 Rw6G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1106
AarI	CACCTGC	1 cut(s)	747
AasI	GACNNNNNNGTC	1 cut(s)	626
Acc36I	ACCTGC	1 cut(s)	747
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	3 cut(s)	125, 145, 1445
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	408
AcvI	CACGTG	1 cut(s)	762
AfiI	CCNNNNNNNGG	2 cut(s)	41, 150
AflIII	ACRYGT	2 cut(s)	304, 761
AgsI	TTSAA	7 cut(s)	188, 236, 278, 355, 520, 691, 1052
AjiI	CACGTC	1 cut(s)	650
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
Alw21I	GWGCWC	3 cut(s)	327, 433, 759
Alw26I	GTCTC	2 cut(s)	122, 280
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	5 cut(s)	122, 958, 1082, 1121, 1442
ApoI	RAATTY	1 cut(s)	380
AspLEI	GCGC	2 cut(s)	464, 708
AspS9I	GGNCC	7 cut(s)	174, 213, 246, 725, 896, 1315, 1447
AsuHPI	GGTGA	4 cut(s)	676, 728, 1282, 1313
AsuII	TTCGAA	1 cut(s)	975
AvaII	GGWCC	6 cut(s)	213, 246, 725, 896, 1315, 1447
BamHI	GGATCC	2 cut(s)	469, 504
BanII	GRGCYC	2 cut(s)	327, 433
BbrPI	CACGTG	1 cut(s)	762
BbsI	GAAGAC	2 cut(s)	173, 266
Bbv12I	GWGCWC	3 cut(s)	327, 433, 759
BbvCI	CCTCAGC	1 cut(s)	39
BbvI	GCAGC	5 cut(s)	134, 970, 1069, 1108, 1454
BccI	CCATC	6 cut(s)	257, 736, 815, 879, 1298, 1334
BceAI	ACGGC	2 cut(s)	875, 1390
BciVI	GTATCC	1 cut(s)	151
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	2 cut(s)	122, 280
BfaI	CTAG	4 cut(s)	132, 344, 599, 863
BfmI	CTRYAG	3 cut(s)	253, 956, 1122
BfoI	RGCGCY	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	747
BfuI	GTATCC	1 cut(s)	151
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	5 cut(s)	123, 959, 1083, 1122, 1443
BlsI	GCNGC	5 cut(s)	124, 960, 1084, 1123, 1444
Bme18I	GGWCC	6 cut(s)	213, 246, 725, 896, 1315, 1447
BmgBI	CACGTC	1 cut(s)	650
BmgT120I	GGNCC	7 cut(s)	174, 213, 246, 725, 896, 1315, 1447
BmiI	GGNNCC	7 cut(s)	158, 176, 214, 471, 506, 1199, 1316
BmsI	GCATC	6 cut(s)	109, 272, 533, 781, 1179, 1468
BpiI	GAAGAC	2 cut(s)	173, 266
BplI	GAGNNNNNCTC	4 cut(s)	314, 346, 1465, 1497
Bpu10I	CCTNAGC	1 cut(s)	39
Bpu14I	TTCGAA	1 cut(s)	975
BpuEI	CTTGAG	2 cut(s)	1061, 1280
Bsa29I	ATCGAT	1 cut(s)	553
BsaAI	YACGTR	1 cut(s)	762
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	857, 1201
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 150
Bse1I	ACTGG	3 cut(s)	148, 506, 899
Bse8I	GATNNNNATC	1 cut(s)	474
BseAI	TCCGGA	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	553
BseDI	CCNNGG	2 cut(s)	857, 1201
BseGI	GGATG	5 cut(s)	10, 89, 890, 1345, 1357
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	41, 150
BseMII	CTCAG	2 cut(s)	30, 927
BseNI	ACTGG	3 cut(s)	148, 506, 899
BseRI	GAGGAG	1 cut(s)	1025
BseXI	GCAGC	5 cut(s)	134, 970, 1069, 1108, 1454
BsgI	GTGCAG	1 cut(s)	1068
BshFI	GGCC	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	553
BsiHKAI	GWGCWC	3 cut(s)	327, 433, 759
BsiSI	CCGG	2 cut(s)	35, 74
BslFI	GGGAC	1 cut(s)	958
BslI	CCNNNNNNNGG	2 cut(s)	41, 150
BsmAI	GTCTC	2 cut(s)	122, 280
BsmFI	GGGAC	1 cut(s)	958
BsmI	GAATGC	2 cut(s)	81, 362
BsnI	GGCC	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	975
Bsp1286I	GDGCHC	3 cut(s)	327, 433, 759
Bsp13I	TCCGGA	1 cut(s)	73
BspACI	CCGC	3 cut(s)	125, 145, 1445
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	2 cut(s)	31, 928
BspDI	ATCGAT	1 cut(s)	553
BspEI	TCCGGA	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	846
BspLI	GGNNCC	7 cut(s)	158, 176, 214, 471, 506, 1199, 1316
BspMAI	CTGCAG	2 cut(s)	960, 1126
BspMI	ACCTGC	1 cut(s)	747
BspT104I	TTCGAA	1 cut(s)	975
BsrI	ACTGG	3 cut(s)	148, 506, 899
BssECI	CCNNGG	2 cut(s)	857, 1201
BssT1I	CCWWGG	1 cut(s)	1201
Bst4CI	ACNGT	3 cut(s)	199, 291, 1301
Bst6I	CTCTTC	1 cut(s)	954
BstBAI	YACGTR	1 cut(s)	762
BstBI	TTCGAA	1 cut(s)	975
BstDEI	CTNAG	3 cut(s)	39, 811, 936
BstDSI	CCRYGG	1 cut(s)	857
BstF5I	GGATG	5 cut(s)	10, 89, 890, 1345, 1357
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	2 cut(s)	464, 708
BstMAI	GTCTC	2 cut(s)	122, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	739
BstSFI	CTRYAG	3 cut(s)	253, 956, 1122
BstV1I	GCAGC	5 cut(s)	134, 970, 1069, 1108, 1454
BstV2I	GAAGAC	2 cut(s)	173, 266
BstX2I	RGATCY	6 cut(s)	391, 442, 469, 504, 824, 1030
BstYI	RGATCY	6 cut(s)	391, 442, 469, 504, 824, 1030
Bsu15I	ATCGAT	1 cut(s)	553
BsuI	GTATCC	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	175
BsuTUI	ATCGAT	1 cut(s)	553
BtgI	CCRYGG	1 cut(s)	857
BtgZI	GCGATG	2 cut(s)	714, 1398
BtrI	CACGTC	1 cut(s)	650
BtsCI	GGATG	5 cut(s)	10, 89, 890, 1345, 1357
BtsIMutI	CAGTG	4 cut(s)	155, 195, 296, 499
BveI	ACCTGC	1 cut(s)	747
CciI	TCATGA	1 cut(s)	846
CfoI	GCGC	2 cut(s)	464, 708
Cfr13I	GGNCC	7 cut(s)	174, 213, 246, 725, 896, 1315, 1447
ClaI	ATCGAT	1 cut(s)	553
CspCI	CAANNNNNGTGG	2 cut(s)	1190, 1225
CviAII	CATG	5 cut(s)	743, 847, 908, 1039, 1283
DdeI	CTNAG	3 cut(s)	39, 811, 936
DrdI	GACNNNNNNGTC	1 cut(s)	626
DseDI	GACNNNNNNGTC	1 cut(s)	626
Eam1104I	CTCTTC	1 cut(s)	954
EarI	CTCTTC	1 cut(s)	954
Ecl136II	GAGCTC	2 cut(s)	325, 431
Eco130I	CCWWGG	1 cut(s)	1201
Eco24I	GRGCYC	2 cut(s)	327, 433
Eco47I	GGWCC	6 cut(s)	213, 246, 725, 896, 1315, 1447
Eco53kI	GAGCTC	2 cut(s)	325, 431
Eco57I	CTGAAG	1 cut(s)	408
Eco72I	CACGTG	1 cut(s)	762
EcoICRI	GAGCTC	2 cut(s)	325, 431
EcoO109I	RGGNCCY	2 cut(s)	174, 213
EcoT14I	CCWWGG	1 cut(s)	1201
EcoT38I	GRGCYC	2 cut(s)	327, 433
ErhI	CCWWGG	1 cut(s)	1201
FaeI	CATG	5 cut(s)	746, 850, 911, 1042, 1286
FalI	AAGNNNNNCTT	2 cut(s)	448, 480
FaqI	GGGAC	1 cut(s)	958
FatI	CATG	5 cut(s)	742, 846, 907, 1038, 1282
FauI	CCCGC	1 cut(s)	152
FauNDI	CATATG	1 cut(s)	697
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	5 cut(s)	123, 959, 1083, 1122, 1443
FokI	GGATG	5 cut(s)	17, 76, 897, 1352, 1364
FriOI	GRGCYC	2 cut(s)	327, 433
Fsp4HI	GCNGC	5 cut(s)	123, 959, 1083, 1122, 1443
FspBI	CTAG	4 cut(s)	132, 344, 599, 863
GlaI	GCGC	2 cut(s)	463, 707
GluI	GCNGC	5 cut(s)	123, 959, 1083, 1122, 1443
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	2 cut(s)	35, 74
HhaI	GCGC	2 cut(s)	464, 708
Hin1II	CATG	5 cut(s)	746, 850, 911, 1042, 1286
Hin6I	GCGC	2 cut(s)	462, 706
HinP1I	GCGC	2 cut(s)	462, 706
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	2 cut(s)	679, 1256
HinfI	GANTC	5 cut(s)	271, 347, 588, 946, 1147
HpaI	GTTAAC	1 cut(s)	108
HpaII	CCGG	2 cut(s)	35, 74
HphI	GGTGA	4 cut(s)	676, 728, 1282, 1313
Hpy166II	GTNNAC	2 cut(s)	108, 1396
Hpy188I	TCNGA	4 cut(s)	615, 717, 750, 937
Hpy8I	GTNNAC	2 cut(s)	108, 1396
Hpy99I	CGWCG	1 cut(s)	1301
HpyCH4III	ACNGT	3 cut(s)	199, 291, 1301
HpyCH4IV	ACGT	4 cut(s)	304, 621, 649, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	739
HpyF3I	CTNAG	3 cut(s)	39, 811, 936
HpySE526I	ACGT	4 cut(s)	304, 621, 649, 761
Hsp92II	CATG	5 cut(s)	746, 850, 911, 1042, 1286
HspAI	GCGC	2 cut(s)	462, 706
Kpn2I	TCCGGA	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	7
KspAI	GTTAAC	1 cut(s)	108
LmnI	GCTCC	4 cut(s)	37, 229, 322, 428
Lsp1109I	GCAGC	5 cut(s)	134, 970, 1069, 1108, 1454
LweI	GCATC	6 cut(s)	109, 272, 533, 781, 1179, 1468
MaeI	CTAG	4 cut(s)	132, 344, 599, 863
MaeII	ACGT	4 cut(s)	304, 621, 649, 761
MaeIII	GTNAC	1 cut(s)	764
MboII	GAAGA	8 cut(s)	178, 266, 401, 437, 789, 941, 1109, 1486
MflI	RGATCY	6 cut(s)	391, 442, 469, 504, 824, 1030
MhlI	GDGCHC	3 cut(s)	327, 433, 759
MluCI	AATT	7 cut(s)	188, 278, 380, 417, 481, 970, 1245
MlyI	GAGTC	3 cut(s)	280, 341, 940
MmeI	TCCRAC	2 cut(s)	1008, 1022
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	5 cut(s)	107, 372, 455, 879, 1242
MslI	CAYNNNNRTG	1 cut(s)	741
MspA1I	CMGCKG	2 cut(s)	125, 1445
MspI	CCGG	2 cut(s)	35, 74
Mva1269I	GAATGC	2 cut(s)	81, 362
MwoI	GCNNNNNNNGC	1 cut(s)	739
NdeI	CATATG	1 cut(s)	697
NlaIII	CATG	5 cut(s)	746, 850, 911, 1042, 1286
NlaIV	GGNNCC	7 cut(s)	158, 176, 214, 471, 506, 1199, 1316
NspV	TTCGAA	1 cut(s)	975
PagI	TCATGA	1 cut(s)	846
PaqCI	CACCTGC	1 cut(s)	747
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PctI	GAATGC	2 cut(s)	81, 362
PfeI	GAWTC	2 cut(s)	588, 1147
PkrI	GCNGC	5 cut(s)	124, 960, 1084, 1123, 1444
PleI	GAGTC	3 cut(s)	279, 341, 940
PmaCI	CACGTG	1 cut(s)	762
PmlI	CACGTG	1 cut(s)	762
PpsI	GAGTC	3 cut(s)	279, 341, 940
Ppu21I	YACGTR	1 cut(s)	762
PpuMI	RGGWCCY	1 cut(s)	213
PsiI	TTATAA	1 cut(s)	1106
Psp124BI	GAGCTC	2 cut(s)	327, 433
Psp5II	RGGWCCY	1 cut(s)	213
PspCI	CACGTG	1 cut(s)	762
PspN4I	GGNNCC	7 cut(s)	158, 176, 214, 471, 506, 1199, 1316
PspPI	GGNCC	7 cut(s)	174, 213, 246, 725, 896, 1315, 1447
PspPPI	RGGWCCY	1 cut(s)	213
PstI	CTGCAG	2 cut(s)	960, 1126
PsuI	RGATCY	6 cut(s)	391, 442, 469, 504, 824, 1030
RseI	CAYNNNNRTG	1 cut(s)	741
SacI	GAGCTC	2 cut(s)	327, 433
SaqAI	TTAA	5 cut(s)	107, 372, 455, 879, 1242
SatI	GCNGC	5 cut(s)	123, 959, 1083, 1122, 1443
Sau96I	GGNCC	7 cut(s)	174, 213, 246, 725, 896, 1315, 1447
SchI	GAGTC	3 cut(s)	280, 341, 940
SduI	GDGCHC	3 cut(s)	327, 433, 759
SfaNI	GCATC	6 cut(s)	109, 272, 533, 781, 1179, 1468
SfcI	CTRYAG	3 cut(s)	253, 956, 1122
SfuI	TTCGAA	1 cut(s)	975
SinI	GGWCC	6 cut(s)	213, 246, 725, 896, 1315, 1447
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	2 cut(s)	1076, 1259
SmoI	CTYRAG	2 cut(s)	1076, 1259
Sse9I	AATT	7 cut(s)	188, 278, 380, 417, 481, 970, 1245
SsiI	CCGC	3 cut(s)	125, 145, 1445
SspI	AATATT	3 cut(s)	27, 205, 1072
SspMI	CTAG	4 cut(s)	132, 344, 599, 863
SstI	GAGCTC	2 cut(s)	327, 433
StyI	CCWWGG	1 cut(s)	1201
TaaI	ACNGT	3 cut(s)	199, 291, 1301
TaiI	ACGT	4 cut(s)	307, 624, 652, 764
TaqI	TCGA	7 cut(s)	282, 376, 448, 553, 630, 675, 975
TasI	AATT	7 cut(s)	188, 278, 380, 417, 481, 970, 1245
TfiI	GAWTC	2 cut(s)	588, 1147
Tru1I	TTAA	5 cut(s)	107, 372, 455, 879, 1242
Tru9I	TTAA	5 cut(s)	107, 372, 455, 879, 1242
TscAI	CASTG	4 cut(s)	155, 202, 296, 506
TseI	GCWGC	5 cut(s)	122, 958, 1082, 1121, 1442
TspDTI	ATGAA	7 cut(s)	90, 327, 580, 835, 941, 1401, 1425
TspGWI	ACGGA	2 cut(s)	1149, 1409
TspRI	CASTG	4 cut(s)	155, 202, 296, 506
VpaK11BI	GGWCC	6 cut(s)	213, 246, 725, 896, 1315, 1447
XapI	RAATTY	1 cut(s)	380
XspI	CTAG	4 cut(s)	132, 344, 599, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.