Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002574

Physical Location & Seq

Genomic Coordinates Forward (+)

70936361 .. 70937153

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0586200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCGGATAATATCAGTGTTTCGTCAATGGATGAGGATGAAGGGAGCTCTCGGTTGACGCCCATGGAGGCGTGGGCGGTGCTCAGCGTGAAAGCTCCAAAGGTTAGGCTCACCGTTGACTTCTACAAGAATGTTCAGCGCCATCGTGACTTCCCGTTTCACATTCCGCCACCGATCGATGGTGGTGATGGTTCCAAGCATGGTGGTATCAGATTGATGTTTGATCAAGATTTGAAAGAAGTTGTTGCTAAGGTGGAGCTTGCTGGAGCTGTATCTGAGGGAGATTTCAGAGAAGACTATATGATGTCAGGCAAGCATATGGGAAAGATCAGGGACCCATTTGGCATAGAGTGGTCTATTGTGGCAAACTTGACTGCTCCTGCTGCTGGGGAACTTGGCCATGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

136

Amino Acids

14.95

Weight (kDa)

5.48

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27090 AT3G27090 AT3G27090
fragaria_vesca	FvH4_6g53510 FvH4_6g53510 FvH4_6g53510
malus_domestica	MD00G1139300.v1.1 MD09G1011000.v1.1
prunus_persica	Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.8G002400_v2.0.a1
pyrus_communis	pycom111g00920 pycom17g00940
rosa_chinensis	RchiOBHm_Chr2g0175541 RchiOBHm_Chr6g0249531
rosa_laevigata	RLG00000015572 RLG00000022337
rosa_multiflora	Rmu_co8403361.1_g000001 Rmu_sc0008219.1_g000003 Rmu_sc0021955.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217590
rosa_rugosa	Rorug02G0586000 Rorug02G0586100 Rorug02G0586200 Rorug02G0586300 Rorug02G0586400 Rorug02G0586500 Rorug05G0493300
rosa_samantha	Rh2AG665200 Rh2BG676000 Rh2CG639200 Rh2DG690000 Rh6AG003000 Rh6BG007100 Rh6CG002000 Rh6DG002000
rosa_wichuraiana	Rw2G054530 Rw6G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 77, 167
AcoI	YGGCCR	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	179, 386
AgsI	TTSAA	1 cut(s)	235
AluBI	AGCT	4 cut(s)	48, 95, 259, 269
AluI	AGCT	4 cut(s)	48, 95, 259, 269
Alw21I	GWGCWC	2 cut(s)	50, 84
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	103, 197
AvaII	GGWCC	1 cut(s)	334
BalI	TGGCCA	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	2 cut(s)	50, 84
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	3 cut(s)	150, 173, 182
BclI	TGATCA	1 cut(s)	223
BfoI	RGCGCY	1 cut(s)	142
BisI	GCNGC	1 cut(s)	384
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	385
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	3 cut(s)	193, 335, 336
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	83
Bsa29I	ATCGAT	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 386
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	37, 43
BseLI	CCNNNNNNNGG	2 cut(s)	179, 386
BseMII	CTCAG	2 cut(s)	97, 267
BseXI	GCAGC	1 cut(s)	370
BseYI	CCCAGC	1 cut(s)	386
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	399
BshVI	ATCGAT	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	50, 84
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	179, 386
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	399
Bsp1286I	GDGCHC	2 cut(s)	50, 84
Bsp143I	GATC	3 cut(s)	174, 223, 327
Bsp1720I	GCTNAGC	1 cut(s)	83
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	3 cut(s)	5, 77, 167
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	2 cut(s)	96, 268
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	193, 335, 336
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	174, 223, 327
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	261, 314
BstDEI	CTNAG	3 cut(s)	83, 249, 276
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	37, 43
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	3 cut(s)	177, 226, 330
BstMBI	GATC	3 cut(s)	174, 223, 327
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	370
BstV2I	GAAGAC	1 cut(s)	300
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	399
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	37, 43
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	261, 314
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	334
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	1 cut(s)	67
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	3 cut(s)	64, 200, 401
CviJI	RGCY	6 cut(s)	48, 95, 109, 259, 269, 399
CviKI_1	RGCY	6 cut(s)	48, 95, 109, 259, 269, 399
DdeI	CTNAG	3 cut(s)	83, 249, 276
DpnI	GATC	3 cut(s)	176, 225, 329
DpnII	GATC	3 cut(s)	174, 223, 327
EaeI	YGGCCR	1 cut(s)	397
EciI	GGCGGA	2 cut(s)	20, 156
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	48
EcoO109I	RGGNCCY	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	67, 203, 404
FaiI	YATR	8 cut(s)	65, 201, 300, 302, 318, 320, 347, 402
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	3 cut(s)	63, 199, 400
FauNDI	CATATG	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	2 cut(s)	44, 50
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	384
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	384
GsaI	CCCAGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	285
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	399
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	67, 203, 404
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	2 cut(s)	57, 118
HindII	GTYRAC	2 cut(s)	57, 118
HphI	GGTGA	2 cut(s)	103, 197
Hpy166II	GTNNAC	2 cut(s)	57, 118
Hpy188I	TCNGA	3 cut(s)	212, 277, 290
Hpy188III	TCNNGA	2 cut(s)	146, 227
Hpy8I	GTNNAC	2 cut(s)	57, 118
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	3 cut(s)	83, 249, 276
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	67, 203, 404
HspAI	GCGC	1 cut(s)	139
KflI	GGGWCCC	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	174, 223, 327
LmnI	GCTCC	5 cut(s)	45, 100, 256, 266, 382
LpnPI	CCDG	5 cut(s)	249, 294, 316, 372, 393
Lsp1109I	GCAGC	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	3 cut(s)	176, 225, 329
MboI	GATC	3 cut(s)	174, 223, 327
MboII	GAAGA	1 cut(s)	305
MhlI	GDGCHC	2 cut(s)	50, 84
MlsI	TGGCCA	1 cut(s)	399
MluNI	TGGCCA	1 cut(s)	399
MnlI	CCTC	3 cut(s)	28, 61, 271
Mox20I	TGGCCA	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	318
NdeII	GATC	3 cut(s)	174, 223, 327
NlaIII	CATG	3 cut(s)	67, 203, 404
NlaIV	GGNNCC	3 cut(s)	193, 335, 336
NmuCI	GTSAC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	385
Ple19I	CGATCG	1 cut(s)	177
PpuMI	RGGWCCY	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	386
PspN4I	GGNNCC	3 cut(s)	193, 335, 336
PspPI	GGNCC	1 cut(s)	334
PspPPI	RGGWCCY	1 cut(s)	334
PvuI	CGATCG	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	50
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	3 cut(s)	174, 223, 327
Sau96I	GGNCC	1 cut(s)	334
SduI	GDGCHC	2 cut(s)	50, 84
SetI	ASST	6 cut(s)	50, 97, 105, 255, 261, 271
SinI	GGWCC	1 cut(s)	334
SsiI	CCGC	3 cut(s)	5, 77, 167
SstI	GAGCTC	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.