Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002574

Physical Location & Seq

Genomic Coordinates Forward (+)

67607520 .. 67608820

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0493300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCAAGCGCCGGCAAAGAAAGTATTGGTGGTGGCAGATCCGACCCGAGATTCATCGGGTGCGCTCCAATACGCACTTTCTCATTCAGTGCTCGAACACGACGAGTTGATCCTCCTTCATGTTGAGAACCCAAGTAATTGGATACACGGATTCAATCTCAATACATTGCTCAAAATCCCGCCTAATCTAGCTACCGTCGCCGCCCAAGCCATGTCGTCGTTTGATCACGGGAAAGGAAATGGAATTGCAAACTCAGGGATTGAGCCAGTAAAGGATTTTCTTGAAGAAATGAAGAATGAATGCAATCGGGCAAAACCAAAACTAAATGTGCGCATAGAGAGGGTAACATTGGAAGCTGGCAGAGACAGAGCAAACACTATTTTACATCATAGCGAAGTTTTTGGGGTTGACATCATTGTTATAGGGCAACGGCGAGGTCTTTTTCCCAAGGGACATTTAGGAGCATATACATGGCCTGGAGGGCGATCGACAGGGTCGTCGAAAGGTATAAACACAGCAGAGTATTTGATTGAGAACTGCAAGTGCACTTGTGTTGGAGTACAGAAGAAGGGCCAAGCTGGAGGCTACGTTCTCAACTCAAAAACCCACAAAAATTTCTGGCTTCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

210

Amino Acids

22.9

Weight (kDa)

9.05

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27090 AT3G27090 AT3G27090
fragaria_vesca	FvH4_6g53510 FvH4_6g53510 FvH4_6g53510
malus_domestica	MD00G1139300.v1.1 MD09G1011000.v1.1
prunus_persica	Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.8G002400_v2.0.a1
pyrus_communis	pycom111g00920 pycom17g00940
rosa_chinensis	RchiOBHm_Chr2g0175541 RchiOBHm_Chr6g0249531
rosa_laevigata	RLG00000015572 RLG00000022337
rosa_multiflora	Rmu_co8403361.1_g000001 Rmu_sc0008219.1_g000003 Rmu_sc0021955.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217590
rosa_rugosa	Rorug02G0586000 Rorug02G0586100 Rorug02G0586200 Rorug02G0586300 Rorug02G0586400 Rorug02G0586500 Rorug05G0493300
rosa_samantha	Rh2AG665200 Rh2BG676000 Rh2CG639200 Rh2DG690000 Rh6AG003000 Rh6BG007100 Rh6CG002000 Rh6DG002000
rosa_wichuraiana	Rw2G054530 Rw6G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	496
Acc16I	TGCGCA	1 cut(s)	332
AciI	CCGC	2 cut(s)	179, 201
AclWI	GGATC	2 cut(s)	32, 103
AcsI	RAATTY	1 cut(s)	613
AfaI	GTAC	1 cut(s)	561
AgsI	TTSAA	2 cut(s)	154, 284
AjnI	CCWGG	1 cut(s)	475
AloI	GAACNNNNNNTCC	2 cut(s)	573, 605
AluBI	AGCT	3 cut(s)	191, 356, 578
AluI	AGCT	3 cut(s)	191, 356, 578
Alw21I	GWGCWC	2 cut(s)	93, 548
Alw26I	GTCTC	1 cut(s)	357
Alw44I	GTGCAC	1 cut(s)	544
AlwI	GGATC	2 cut(s)	32, 103
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	2 cut(s)	473, 571
ApaLI	GTGCAC	1 cut(s)	544
ApoI	RAATTY	1 cut(s)	613
AspLEI	GCGC	3 cut(s)	10, 64, 333
AspS9I	GGNCC	1 cut(s)	571
AvaI	CYCGRG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	548
Bbv12I	GWGCWC	2 cut(s)	93, 548
BceAI	ACGGC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	477
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	135
BglI	GCCNNNNNGGC	1 cut(s)	481
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	477
BmeT110I	CYCGRG	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	571
BmrFI	CCNGG	1 cut(s)	477
BpmI	CTGGAG	2 cut(s)	498, 600
BsaJI	CCNNGG	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	447
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	548
Bsh1285I	CGRYCG	1 cut(s)	488
BshFI	GGCC	2 cut(s)	475, 573
BsiEI	CGRYCG	1 cut(s)	488
BsiHKAI	GWGCWC	2 cut(s)	93, 548
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	465
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	465
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	475, 573
BsoBI	CYCGRG	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	93, 548
Bsp143I	GATC	4 cut(s)	37, 108, 223, 485
BspACI	CCGC	2 cut(s)	179, 201
BspANI	GGCC	2 cut(s)	475, 573
BspCNI	CTCAG	1 cut(s)	266
BspPI	GGATC	2 cut(s)	32, 103
BsrDI	GCAATG	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	4 cut(s)	37, 108, 223, 485
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	3 cut(s)	6, 12, 358
BstDEI	CTNAG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	3 cut(s)	10, 64, 333
BstKTI	GATC	4 cut(s)	40, 111, 226, 488
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	4 cut(s)	37, 108, 223, 485
BstMCI	CGRYCG	1 cut(s)	488
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 206, 481
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstSLI	GKGCMC	1 cut(s)	548
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	475, 573
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	6, 12, 358
CfoI	GCGC	3 cut(s)	10, 64, 333
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	571
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	3 cut(s)	119, 211, 471
CviJI	RGCY	9 cut(s)	191, 209, 265, 356, 475, 573, 578, 585, 622
CviKI_1	RGCY	9 cut(s)	191, 209, 265, 356, 475, 573, 578, 585, 622
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	4 cut(s)	39, 110, 225, 487
DpnII	GATC	4 cut(s)	37, 108, 223, 485
DrdI	GACNNNNNNGTC	1 cut(s)	496
DseDI	GACNNNNNNGTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	122, 214, 474
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	3 cut(s)	118, 210, 470
FauI	CCCGC	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
FspAI	RTGCGCAY	1 cut(s)	332
FspBI	CTAG	1 cut(s)	188
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	3 cut(s)	9, 63, 332
GluI	GCNGC	1 cut(s)	201
GsuI	CTGGAG	2 cut(s)	498, 600
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	475, 573
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	3 cut(s)	10, 64, 333
Hin1II	CATG	3 cut(s)	122, 214, 474
Hin6I	GCGC	3 cut(s)	8, 62, 331
HinP1I	GCGC	3 cut(s)	8, 62, 331
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	2 cut(s)	50, 150
HpaII	CCGG	1 cut(s)	11
Hpy166II	GTNNAC	2 cut(s)	409, 546
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	2 cut(s)	409, 546
Hpy99I	CGWCG	4 cut(s)	104, 200, 220, 502
HpyAV	CCTTC	2 cut(s)	125, 562
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	6 cut(s)	4, 248, 303, 540, 546, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 206, 481
HpyF3I	CTNAG	1 cut(s)	253
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	3 cut(s)	122, 214, 474
HspAI	GCGC	3 cut(s)	8, 62, 331
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	37, 108, 223, 485
LmnI	GCTCC	2 cut(s)	69, 461
LpnPI	CCDG	9 cut(s)	24, 240, 279, 342, 462, 477, 489, 564, 604
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	4 cut(s)	39, 110, 225, 487
MboI	GATC	4 cut(s)	37, 108, 223, 485
MboII	GAAGA	3 cut(s)	296, 304, 577
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	93, 548
MluCI	AATT	3 cut(s)	136, 243, 613
MmeI	TCCRAC	2 cut(s)	65, 535
MnlI	CCTC	5 cut(s)	122, 333, 428, 473, 575
MroNI	GCCGGC	1 cut(s)	10
MslI	CAYNNNNRTG	1 cut(s)	469
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	197, 206, 481
NaeI	GCCGGC	1 cut(s)	12
NdeII	GATC	4 cut(s)	37, 108, 223, 485
NgoMIV	GCCGGC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	122, 214, 474
NsbI	TGCGCA	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 494
PctI	GAATGC	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	50, 150
PflFI	GACNNNGTC	1 cut(s)	493
PkrI	GCNGC	1 cut(s)	202
Ple19I	CGATCG	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	493
PvuI	CGATCG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
RseI	CAYNNNNRTG	1 cut(s)	469
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	4 cut(s)	37, 108, 223, 485
Sau96I	GGNCC	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	2 cut(s)	93, 548
SetI	ASST	6 cut(s)	193, 358, 439, 508, 580, 591
SmiMI	CAYNNNNRTG	1 cut(s)	469
Sse9I	AATT	3 cut(s)	136, 243, 613
SsiI	CCGC	2 cut(s)	179, 201
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	3 cut(s)	93, 488, 500
TasI	AATT	3 cut(s)	136, 243, 613
TatI	WGTACW	1 cut(s)	559
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	50, 150
TscAI	CASTG	1 cut(s)	93
TspDTI	ATGAA	4 cut(s)	42, 107, 305, 312
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	93
Tth111I	GACNNNGTC	1 cut(s)	493
VneI	GTGCAC	1 cut(s)	544
XapI	RAATTY	1 cut(s)	613
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.