Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8403361.1

Orthogroup ID

OG0002574

Physical Location & Seq

Genomic Coordinates Reverse (-)

115 .. 1048

Gene Structure 934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8403361.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgataaatgatggtccttatacatattccttccaaccatgcaacttgcccttgcttctagagttcactggtttacctccaaggtacagggactctgttcgggcgattacacctggcttacctctgtttctctacaactatacaacccaccaactgcatggcatttttgaggcatcaagctttggcggttcaaacattgatccaactgcttgggaagacaagaaatgtaaaggcgagtcaaggtttcctgcgcaggtaaggatctgtgttagaaaaatctgcaaggctctggaagaagattccttcaggccagtcttgcatcactatgatggtccaaagttccgtcttgagttgtcagttcccgagaccctggatctattggacctatgtgagcaagccggctctgcagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

137

Amino Acids

15.46

Weight (kDa)

5.76

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27090 AT3G27090 AT3G27090
fragaria_vesca	FvH4_6g53510 FvH4_6g53510 FvH4_6g53510
malus_domestica	MD00G1139300.v1.1 MD09G1011000.v1.1
prunus_persica	Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.8G002400_v2.0.a1
pyrus_communis	pycom111g00920 pycom17g00940
rosa_chinensis	RchiOBHm_Chr2g0175541 RchiOBHm_Chr6g0249531
rosa_laevigata	RLG00000015572 RLG00000022337
rosa_multiflora	Rmu_co8403361.1_g000001 Rmu_sc0008219.1_g000003 Rmu_sc0021955.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217590
rosa_rugosa	Rorug02G0586000 Rorug02G0586100 Rorug02G0586200 Rorug02G0586300 Rorug02G0586400 Rorug02G0586500 Rorug05G0493300
rosa_samantha	Rh2AG665200 Rh2BG676000 Rh2CG639200 Rh2DG690000 Rh6AG003000 Rh6BG007100 Rh6CG002000 Rh6DG002000
rosa_wichuraiana	Rw2G054530 Rw6G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	244
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	3 cut(s)	194, 269, 381
AcuI	CTGAAG	1 cut(s)	289
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	192
AjnI	CCWGG	2 cut(s)	112, 369
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	3 cut(s)	194, 269, 381
Ama87I	CYCGRG	1 cut(s)	362
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	407
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	3 cut(s)	14, 332, 382
AvaI	CYCGRG	1 cut(s)	362
AvaII	GGWCC	3 cut(s)	14, 332, 382
BbsI	GAAGAC	1 cut(s)	222
BccI	CCATC	2 cut(s)	5, 323
BciT130I	CCWGG	2 cut(s)	114, 371
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	2 cut(s)	114, 371
Bme18I	GGWCC	3 cut(s)	14, 332, 382
BmeT110I	CYCGRG	1 cut(s)	362
BmgT120I	GGNCC	3 cut(s)	14, 332, 382
BmrFI	CCNGG	2 cut(s)	114, 371
BmsI	GCATC	2 cut(s)	182, 328
BpiI	GAAGAC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	80, 369
Bse118I	RCCGGY	1 cut(s)	398
Bse1I	ACTGG	2 cut(s)	73, 311
BseBI	CCWGG	2 cut(s)	114, 371
BseDI	CCNNGG	2 cut(s)	80, 369
BseNI	ACTGG	2 cut(s)	73, 311
BshFI	GGCC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	310
Bso31I	GGTCTC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	362
Bsp143I	GATC	3 cut(s)	199, 261, 373
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	409
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	3 cut(s)	194, 269, 381
BspTNI	GGTCTC	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	73, 311
BssAI	RCCGGY	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	80, 369
BssMI	GATC	3 cut(s)	199, 261, 373
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	114, 371
BstC8I	GCNNGC	2 cut(s)	396, 400
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	3 cut(s)	202, 264, 376
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	3 cut(s)	199, 261, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 404
BstNI	CCWGG	2 cut(s)	114, 371
BstSCI	CCNGG	2 cut(s)	112, 369
BstSFI	CTRYAG	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	2 cut(s)	261, 373
BstXI	CCANNNNNNTGG	2 cut(s)	158, 210
BstYI	RGATCY	2 cut(s)	261, 373
BsuRI	GGCC	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	396, 400
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	3 cut(s)	14, 332, 382
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	39, 158
CviJI	RGCY	6 cut(s)	117, 180, 287, 310, 398, 402
CviKI_1	RGCY	6 cut(s)	117, 180, 287, 310, 398, 402
CviQI	GTAC	1 cut(s)	85
DpnI	GATC	3 cut(s)	201, 263, 375
DpnII	GATC	3 cut(s)	199, 261, 373
Eco130I	CCWWGG	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	359
Eco47I	GGWCC	3 cut(s)	14, 332, 382
Eco57I	CTGAAG	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	112, 369
EcoT14I	CCWWGG	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	2 cut(s)	42, 161
FaiI	YATR	8 cut(s)	21, 25, 40, 141, 159, 327, 388, 412
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	2 cut(s)	38, 157
Fnu4HI	GCNGC	1 cut(s)	408
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	1 cut(s)	59
FspI	TGCGCA	1 cut(s)	252
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	1 cut(s)	399
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	42, 161
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	3 cut(s)	92, 236, 299
HpaII	CCGG	1 cut(s)	399
Hpy166II	GTNNAC	2 cut(s)	66, 74
Hpy188III	TCNNGA	4 cut(s)	59, 290, 347, 362
Hpy8I	GTNNAC	2 cut(s)	66, 74
HpyAV	CCTTC	2 cut(s)	40, 313
HpyCH4V	TGCA	5 cut(s)	42, 157, 282, 319, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 404
Hsp92II	CATG	2 cut(s)	42, 161
HspAI	GCGC	1 cut(s)	251
KroI	GCCGGC	1 cut(s)	398
KroNI	GCCGGC	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	199, 261, 373
LweI	GCATC	2 cut(s)	182, 328
MaeI	CTAG	1 cut(s)	59
MalI	GATC	3 cut(s)	201, 263, 375
MboI	GATC	3 cut(s)	199, 261, 373
MboII	GAAGA	3 cut(s)	227, 305, 308
MflI	RGATCY	2 cut(s)	261, 373
MlyI	GAGTC	2 cut(s)	86, 245
MmeI	TCCRAC	2 cut(s)	58, 227
MnlI	CCTC	3 cut(s)	87, 132, 163
MroNI	GCCGGC	1 cut(s)	398
MslI	CAYNNNNRTG	2 cut(s)	324, 327
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	2 cut(s)	114, 371
MvaI	CCWGG	2 cut(s)	114, 371
MwoI	GCNNNNNNNGC	2 cut(s)	316, 404
NaeI	GCCGGC	1 cut(s)	400
NdeII	GATC	3 cut(s)	199, 261, 373
NgoMIV	GCCGGC	1 cut(s)	398
NlaIII	CATG	2 cut(s)	42, 161
NsbI	TGCGCA	1 cut(s)	252
PdiI	GCCGGC	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	2 cut(s)	86, 244
PpsI	GAGTC	2 cut(s)	86, 244
Psp6I	CCWGG	2 cut(s)	112, 369
PspGI	CCWGG	2 cut(s)	112, 369
PspPI	GGNCC	3 cut(s)	14, 332, 382
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	261, 373
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	2 cut(s)	324, 327
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	3 cut(s)	199, 261, 373
Sau96I	GGNCC	3 cut(s)	14, 332, 382
SchI	GAGTC	2 cut(s)	86, 245
ScrFI	CCNGG	2 cut(s)	114, 371
SetI	ASST	8 cut(s)	79, 86, 115, 124, 182, 245, 258, 387
SfaNI	GCATC	2 cut(s)	182, 328
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	3 cut(s)	14, 332, 382
SmiMI	CAYNNNNRTG	2 cut(s)	324, 327
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	112, 369
StyI	CCWWGG	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	1 cut(s)	407
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	3 cut(s)	14, 332, 382
XbaI	TCTAGA	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.