Rorug02G0586400

B2 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002574
Physical Location & Seq
Reverse (-)
70940932 .. 70941608
677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0586400.1

Sequence Viewer

Length: 414 bp
ATGAAGGATATGGTTACTATTATTCCTGACAGCGTTAGGAATCTATGGGAAAGTTGGATTGATCTCCAACAGCCAAGGTTACAGCTTCTGTTTATGTCTTCCTTCAATCACTCCCGAATAAGCTGTGGCTCCCAACAGGGCATCTCTTTGTTGCTGGAATGCAGAGAGAACACGTGCTTTGTATCTTACAAGCTTGGAAACTTCAAGGAATCCATGCTTAAAAAGCCTGATGCTGGACCCAACTATGGGAATCTCATGGAAGAATACTCCTCAAAGCTAGATGCTCAACTTCCTAGTCAAATTGAACTCACAGCAGAACTTGGCAAAGAATCCAGGACATTGACTTATGTGGCTGAAAAAGACGATATGGATTGTGTAAGGAGAAAGATTTTCTTGCAGCCTTTACACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dev_Cell_Death

Protein Analysis

137

Amino Acids

15.78

Weight (kDa)

5.69

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 174
AfiI CCNNNNNNNGG 3 cut(s) 233, 245, 246
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 3 cut(s) 106, 205, 305
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 4 cut(s) 85, 123, 193, 277
AluI AGCT 4 cut(s) 85, 123, 193, 277
AlwNI CAGNNNCTG 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 397
AspS9I GGNCC 1 cut(s) 236
AvaII GGWCC 1 cut(s) 236
BbrPI CACGTG 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 334
BfaI CTAG 2 cut(s) 278, 294
BisI GCNGC 1 cut(s) 398
BlsI GCNGC 1 cut(s) 399
Bme1390I CCNGG 1 cut(s) 334
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 130, 238
BmrFI CCNGG 1 cut(s) 334
BmsI GCATC 3 cut(s) 150, 220, 271
BpiI GAAGAC 1 cut(s) 90
BsaAI YACGTR 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 245, 246
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 1 cut(s) 74
BseLI CCNNNNNNNGG 3 cut(s) 233, 245, 246
BseRI GAGGAG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 409
BslI CCNNNNNNNGG 3 cut(s) 233, 245, 246
BsmI GAATGC 1 cut(s) 164
Bsp143I GATC 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 130, 238
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 174
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNI CCWGG 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 409
BstV2I GAAGAC 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 406
CaiI CAGNNNCTG 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 236
CviAII CATG 2 cut(s) 214, 256
CviJI RGCY 9 cut(s) 73, 85, 123, 129, 193, 226, 277, 353, 400
CviKI_1 RGCY 9 cut(s) 73, 85, 123, 129, 193, 226, 277, 353, 400
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 236
Eco72I CACGTG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 217, 259
FaiI YATR 8 cut(s) 11, 46, 95, 215, 246, 257, 348, 368
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FatI CATG 2 cut(s) 213, 255
Fnu4HI GCNGC 1 cut(s) 398
Fsp4HI GCNGC 1 cut(s) 398
FspBI CTAG 2 cut(s) 278, 294
GluI GCNGC 1 cut(s) 398
Hin1II CATG 2 cut(s) 217, 259
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 4 cut(s) 40, 209, 250, 329
Hpy188III TCNNGA 2 cut(s) 26, 114
HpyAV CCTTC 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 2 cut(s) 162, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 2 cut(s) 217, 259
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 7 cut(s) 39, 122, 140, 219, 240, 319, 346
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 3 cut(s) 150, 220, 271
MaeI CTAG 2 cut(s) 278, 294
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 13, 78
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 2 cut(s) 90, 272
MluCI AATT 1 cut(s) 300
MmeI TCCRAC 2 cut(s) 35, 91
MnlI CCTC 1 cut(s) 280
MseI TTAA 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 334
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 1 cut(s) 223
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 217, 259
NlaIV GGNNCC 2 cut(s) 130, 238
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 4 cut(s) 40, 209, 250, 329
PfoI TCCNGGA 1 cut(s) 332
PkrI GCNGC 1 cut(s) 399
PmaCI CACGTG 1 cut(s) 174
PmlI CACGTG 1 cut(s) 174
Ppu21I YACGTR 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 332
PspCI CACGTG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 2 cut(s) 130, 238
PspPI GGNCC 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 88
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 398
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 334
SetI ASST 6 cut(s) 80, 87, 125, 176, 195, 279
SfaNI GCATC 3 cut(s) 150, 220, 271
SinI GGWCC 1 cut(s) 236
Sse9I AATT 1 cut(s) 300
SspMI CTAG 2 cut(s) 278, 294
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 1 cut(s) 74
TaiI ACGT 1 cut(s) 176
TasI AATT 1 cut(s) 300
TfiI GAWTC 4 cut(s) 40, 209, 250, 329
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 413
TseI GCWGC 1 cut(s) 397
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 236
XspI CTAG 2 cut(s) 278, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.