Rh6BG007100

DCD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002574
Physical Location & Seq
Forward (+)
1014845 .. 1016356
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG007100.1

Sequence Viewer

Length: 918 bp
ATGAGTAGTAGCTCTGTGTGGCAGTTGTCAGTTACTACTCGTAAGGATGATGTACTACAATATCATGATGATCCGATGGTCATGGCCTCCCGAGAAGCTGATCATGATCAGTATCAAACACGGACAGCAGCAACAAGAGTAGCACTGATTGACAATCAATTGATGCAAATGACCACTACTGCCGCAGAATACTCAGATGATGAAGATCATAATAAGAAGGATTATTATTATCGTTATGGAAAGAGTAGTAGTTCCAATTTGAAGAACAACAACAATATGAGTTATGCGGCATTGAAATTGTTAGAAATGAAATTAGGCGGCGTGCAGGCTGTGCAGCATAACAATAAGTCCCTTCATTACTATGTGCAGCAACAGCAGCAGCAGAGTGATAGTGAGAGTAGTGAGATGATGAGCAGTAGTCATGACAATGATTATTGTTATTACAATAAGCAGCAGCAGGTGTGGCATAAGACGCTGCCTCAGGCTGAAATGCTGCCTAGAAATGAAGTCTTGGGAGGTTACATTTTTGTATGCAACAACGAAACCATGCAAGAGGATCTCCACCGTCAACTCTTCGGACTCCCTCAAAAGTACAAGGACTCCGTAAGGGCAATTACCCCAGGCTTACCCATTTTTCTCTACAACTACACAGCCCACCAGCTCCATGGAGTTTTTCAGGCTGTGAGTTTTGGAGGATCAAACATCGATCCAACAGCGTGGGAAGACAAGAAATCCAAAGGAGAATCAAGATTTCCAGCACAAGTTAGAATTCGAGCCAAGGAAAGGTGCAAACCACTAGAAGAGGATGCTTTTAGGCCAATACTCTACCACTATGATGGCCCAAAGTTTCGTTTACAACTCTCTGTGCCTGAGGTGCTTGCATTGTTAGACTTATTCAAAGAAGATCACCGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dev_Cell_Death

Protein Analysis

305

Amino Acids

35.36

Weight (kDa)

6.18

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dev_Cell_Death PF10539 172 - 299 1.1e-40 Development and cell death domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 448
Acc36I ACCTGC 1 cut(s) 448
AciI CCGC 3 cut(s) 183, 287, 318
AclWI GGATC 4 cut(s) 65, 564, 701, 703
AcsI RAATTY 1 cut(s) 768
AfaI GTAC 2 cut(s) 54, 593
AfiI CCNNNNNNNGG 1 cut(s) 783
AgsI TTSAA 3 cut(s) 262, 295, 898
AjnI CCWGG 1 cut(s) 619
AluBI AGCT 3 cut(s) 12, 98, 661
AluI AGCT 3 cut(s) 12, 98, 661
AlwI GGATC 4 cut(s) 65, 564, 701, 703
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 3 cut(s) 84, 815, 838
ApeKI GCWGC 9 cut(s) 128, 334, 367, 376, 379, 451, 454, 475, 493
ApoI RAATTY 1 cut(s) 768
AspS9I GGNCC 1 cut(s) 839
AsuHPI GGTGA 1 cut(s) 899
AvaI CYCGRG 1 cut(s) 90
AxyI CCTNAGG 2 cut(s) 480, 870
BbsI GAAGAC 1 cut(s) 729
BbvI GCAGC 9 cut(s) 140, 346, 379, 388, 391, 462, 463, 466, 480
BccI CCATC 2 cut(s) 70, 830
BciT130I CCWGG 1 cut(s) 621
BclI TGATCA 2 cut(s) 100, 106
BfaI CTAG 2 cut(s) 498, 797
BfuAI ACCTGC 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 621
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 839
BmrFI CCNGG 1 cut(s) 621
BmsI GCATC 2 cut(s) 153, 796
BpiI GAAGAC 1 cut(s) 729
Bsa29I ATCGAT 1 cut(s) 705
BsaBI GATNNNNATC 3 cut(s) 105, 111, 204
BsaJI CCNNGG 3 cut(s) 619, 664, 777
BsaXI ACNNNNNCTCC 2 cut(s) 584, 614
Bsc4I CCNNNNNNNGG 1 cut(s) 783
Bse118I RCCGGY 1 cut(s) 909
Bse21I CCTNAGG 2 cut(s) 480, 870
Bse8I GATNNNNATC 3 cut(s) 105, 111, 204
BseBI CCWGG 1 cut(s) 621
BseCI ATCGAT 1 cut(s) 705
BseDI CCNNGG 3 cut(s) 619, 664, 777
BseGI GGATG 2 cut(s) 52, 811
BseJI GATNNNNATC 3 cut(s) 105, 111, 204
BseLI CCNNNNNNNGG 1 cut(s) 783
BseMII CTCAG 3 cut(s) 207, 494, 861
BseXI GCAGC 9 cut(s) 140, 346, 379, 388, 391, 462, 463, 466, 480
BsgI GTGCAG 3 cut(s) 344, 353, 386
BshFI GGCC 3 cut(s) 86, 817, 840
BshVI ATCGAT 1 cut(s) 705
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 1 cut(s) 910
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 783
BsmFI GGGAC 1 cut(s) 334
BsnI GGCC 3 cut(s) 86, 817, 840
BsoBI CYCGRG 1 cut(s) 90
Bsp143I GATC 8 cut(s) 70, 100, 106, 205, 556, 695, 706, 904
Bsp19I CCATGG 1 cut(s) 664
BspACI CCGC 3 cut(s) 183, 287, 318
BspANI GGCC 3 cut(s) 86, 817, 840
BspCNI CTCAG 3 cut(s) 206, 493, 862
BspDI ATCGAT 1 cut(s) 705
BspHI TCATGA 3 cut(s) 64, 103, 421
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 4 cut(s) 65, 564, 701, 703
BsrFI RCCGGY 1 cut(s) 909
BssAI RCCGGY 1 cut(s) 909
BssECI CCNNGG 3 cut(s) 619, 664, 777
BssMI GATC 8 cut(s) 70, 100, 106, 205, 556, 695, 706, 904
BssT1I CCWWGG 2 cut(s) 664, 777
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 1 cut(s) 566
Bst6I CTCTTC 2 cut(s) 578, 795
BstAPI GCANNNNNTGC 1 cut(s) 331
BstC8I GCNNGC 3 cut(s) 323, 327, 879
BstDEI CTNAG 3 cut(s) 193, 480, 870
BstDSI CCRYGG 1 cut(s) 664
BstF5I GGATG 2 cut(s) 52, 811
BstKTI GATC 8 cut(s) 73, 103, 109, 208, 559, 698, 709, 907
BstMBI GATC 8 cut(s) 70, 100, 106, 205, 556, 695, 706, 904
BstMWI GCNNNNNNNGC 6 cut(s) 331, 373, 376, 463, 472, 874
BstNI CCWGG 1 cut(s) 621
BstSCI CCNGG 1 cut(s) 619
BstV1I GCAGC 9 cut(s) 140, 346, 379, 388, 391, 462, 463, 466, 480
BstV2I GAAGAC 1 cut(s) 729
BstX2I RGATCY 1 cut(s) 556
BstXI CCANNNNNNTGG 3 cut(s) 665, 717, 836
BstYI RGATCY 1 cut(s) 556
Bsu15I ATCGAT 1 cut(s) 705
Bsu36I CCTNAGG 2 cut(s) 480, 870
BsuRI GGCC 3 cut(s) 86, 817, 840
BsuTUI ATCGAT 1 cut(s) 705
BtgI CCRYGG 1 cut(s) 664
BtsCI GGATG 2 cut(s) 52, 811
BtsIMutI CAGTG 1 cut(s) 143
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 3 cut(s) 323, 327, 879
CciI TCATGA 3 cut(s) 64, 103, 421
Cfr10I RCCGGY 1 cut(s) 909
Cfr13I GGNCC 1 cut(s) 839
ClaI ATCGAT 1 cut(s) 705
CseI GACGC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 53, 592
CviAII CATG 6 cut(s) 65, 82, 104, 422, 547, 665
CviQI GTAC 2 cut(s) 53, 592
DdeI CTNAG 3 cut(s) 193, 480, 870
DpnI GATC 8 cut(s) 72, 102, 108, 207, 558, 697, 708, 906
DpnII GATC 8 cut(s) 70, 100, 106, 205, 556, 695, 706, 904
Eam1104I CTCTTC 2 cut(s) 578, 795
EarI CTCTTC 2 cut(s) 578, 795
Eco130I CCWWGG 2 cut(s) 664, 777
Eco81I CCTNAGG 2 cut(s) 480, 870
Eco88I CYCGRG 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 768
EcoRII CCWGG 1 cut(s) 619
EcoT14I CCWWGG 2 cut(s) 664, 777
ErhI CCWWGG 2 cut(s) 664, 777
FaeI CATG 6 cut(s) 68, 85, 107, 425, 550, 668
FaqI GGGAC 1 cut(s) 334
FatI CATG 6 cut(s) 64, 81, 103, 421, 546, 664
FbaI TGATCA 2 cut(s) 100, 106
FokI GGATG 2 cut(s) 59, 818
FspBI CTAG 2 cut(s) 498, 797
HaeIII GGCC 3 cut(s) 86, 817, 840
HapII CCGG 1 cut(s) 910
HgaI GACGC 1 cut(s) 481
Hin1II CATG 6 cut(s) 68, 85, 107, 425, 550, 668
HincII GTYRAC 1 cut(s) 569
HindII GTYRAC 1 cut(s) 569
HinfI GANTC 3 cut(s) 579, 599, 743
HpaII CCGG 1 cut(s) 910
HphI GGTGA 1 cut(s) 899
Hpy166II GTNNAC 2 cut(s) 569, 854
Hpy188I TCNGA 3 cut(s) 75, 196, 578
Hpy188III TCNNGA 5 cut(s) 65, 90, 104, 422, 747
Hpy8I GTNNAC 2 cut(s) 569, 854
HpyAV CCTTC 2 cut(s) 211, 362
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4V TGCA 8 cut(s) 166, 325, 334, 367, 534, 550, 789, 881
HpyF10VI GCNNNNNNNGC 6 cut(s) 331, 373, 376, 463, 472, 874
HpyF3I CTNAG 3 cut(s) 193, 480, 870
Hsp92II CATG 6 cut(s) 68, 85, 107, 425, 550, 668
Ksp22I TGATCA 2 cut(s) 100, 106
Kzo9I GATC 8 cut(s) 70, 100, 106, 205, 556, 695, 706, 904
LmnI GCTCC 1 cut(s) 666
LpnPI CCDG 9 cut(s) 311, 443, 467, 606, 633, 662, 671, 768, 882
Lsp1109I GCAGC 9 cut(s) 140, 346, 379, 388, 391, 462, 463, 466, 480
LweI GCATC 2 cut(s) 153, 796
MaeI CTAG 2 cut(s) 498, 797
MaeIII GTNAC 2 cut(s) 31, 518
MalI GATC 8 cut(s) 72, 102, 108, 207, 558, 697, 708, 906
MboI GATC 8 cut(s) 70, 100, 106, 205, 556, 695, 706, 904
MboII GAAGA 6 cut(s) 215, 274, 565, 734, 812, 914
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 1 cut(s) 556
MluCI AATT 6 cut(s) 158, 256, 296, 311, 612, 768
MlyI GAGTC 2 cut(s) 573, 593
MmeI TCCRAC 1 cut(s) 734
MnlI CCTC 8 cut(s) 97, 489, 509, 547, 594, 686, 796, 865
MslI CAYNNNNRTG 3 cut(s) 360, 426, 834
MspI CCGG 1 cut(s) 910
MspR9I CCNGG 1 cut(s) 621
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 621
MwoI GCNNNNNNNGC 6 cut(s) 331, 373, 376, 463, 472, 874
NcoI CCATGG 1 cut(s) 664
NdeII GATC 8 cut(s) 70, 100, 106, 205, 556, 695, 706, 904
NlaIII CATG 6 cut(s) 68, 85, 107, 425, 550, 668
PagI TCATGA 3 cut(s) 64, 103, 421
PaqCI CACCTGC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 743
PleI GAGTC 2 cut(s) 573, 593
PpsI GAGTC 2 cut(s) 573, 593
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspPI GGNCC 1 cut(s) 839
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 2 cut(s) 54, 593
RsaNI GTAC 2 cut(s) 53, 592
RseI CAYNNNNRTG 3 cut(s) 360, 426, 834
Sau3AI GATC 8 cut(s) 70, 100, 106, 205, 556, 695, 706, 904
Sau96I GGNCC 1 cut(s) 839
SchI GAGTC 2 cut(s) 573, 593
ScrFI CCNGG 1 cut(s) 621
SetI ASST 7 cut(s) 14, 100, 462, 520, 663, 788, 876
SfaNI GCATC 2 cut(s) 153, 796
SmiMI CAYNNNNRTG 3 cut(s) 360, 426, 834
Sse9I AATT 6 cut(s) 158, 256, 296, 311, 612, 768
SsiI CCGC 3 cut(s) 183, 287, 318
SspMI CTAG 2 cut(s) 498, 797
StyD4I CCNGG 1 cut(s) 619
StyI CCWWGG 2 cut(s) 664, 777
TaaI ACNGT 1 cut(s) 566
TaqI TCGA 2 cut(s) 705, 772
TasI AATT 6 cut(s) 158, 256, 296, 311, 612, 768
TatI WGTACW 2 cut(s) 52, 591
TauI GCSGC 3 cut(s) 185, 290, 321
TfiI GAWTC 1 cut(s) 743
TscAI CASTG 1 cut(s) 150
TseI GCWGC 9 cut(s) 128, 334, 367, 376, 379, 451, 454, 475, 493
TspDTI ATGAA 4 cut(s) 216, 323, 344, 519
TspGWI ACGGA 2 cut(s) 136, 592
TspRI CASTG 1 cut(s) 150
XapI RAATTY 1 cut(s) 768
XcmI CCANNNNNNNNNTGG 1 cut(s) 662
XspI CTAG 2 cut(s) 498, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.