Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002574

Physical Location & Seq

Genomic Coordinates Forward (+)

70939566 .. 70940294

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0586300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAACCAAGTTGATGATGATGTTCTGGATTTTGGACCAAATCCCGCAGTTACCACTGTGTCTTCCTCACTGACAATCACAATCCTAATTGTGGCAACCACAATTAGGATTGTGATTGTCAGTGAGGAAGACACAGTGGAGAACATTCTGCCTGGTGCCATTACACGATTTGGGGGCAAAGCTGCTGATTTTAAGCTTGTGTCTGTGCTGAGAAAAGTGAGAGAGTTAACCTCTTTGTTGATTGGGCAAGAAACACTGGATGAGCATGTGGACCTGATTGTTGTTGACCTTGAACTTCTTTATAAACTTAAGGAATCTGAGTTCAATATAATGAGGAGGAGACTTCCTTCTGATATTCCAAAGATTGAATCGATTGTAGCTGGGAGGACAAATACTGACCGGGAACTTGATGGAGTAAGTTTCTTGTCACCTTGGGCCTTGATTGTTGGGCTCTCTATGTCGAGAATTTTCAAGAAGAAGGCAGCCAAAGATAGAAGATTGGCTAGGGAGGCAGAGTTCAAAACAAGAGGAAGTGGTCAATGGAAGACAATGATTCTGCAGAAGCATATCACTGAGGAAAAGGTAGATGAGATACTTGCTGAAGCCATTTCCTGGCGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

207

Amino Acids

23.27

Weight (kDa)

6.2

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27090 AT3G27090 AT3G27090
fragaria_vesca	FvH4_6g53510 FvH4_6g53510 FvH4_6g53510
malus_domestica	MD00G1139300.v1.1 MD09G1011000.v1.1
prunus_persica	Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.8G002400_v2.0.a1
pyrus_communis	pycom111g00920 pycom17g00940
rosa_chinensis	RchiOBHm_Chr2g0175541 RchiOBHm_Chr6g0249531
rosa_laevigata	RLG00000015572 RLG00000022337
rosa_multiflora	Rmu_co8403361.1_g000001 Rmu_sc0008219.1_g000003 Rmu_sc0021955.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217590
rosa_rugosa	Rorug02G0586000 Rorug02G0586100 Rorug02G0586200 Rorug02G0586300 Rorug02G0586400 Rorug02G0586500 Rorug05G0493300
rosa_samantha	Rh2AG665200 Rh2BG676000 Rh2CG639200 Rh2DG690000 Rh6AG003000 Rh6BG007100 Rh6CG002000 Rh6DG002000
rosa_wichuraiana	Rw2G054530 Rw6G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	155
AccB7I	CCANNNNNTGG	1 cut(s)	612
AciI	CCGC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	621
AfiI	CCNNNNNNNGG	3 cut(s)	91, 105, 612
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	5 cut(s)	293, 325, 368, 472, 520
AjnI	CCWGG	2 cut(s)	151, 611
AloI	GAACNNNNNNTCC	4 cut(s)	305, 337, 500, 532
AluBI	AGCT	3 cut(s)	182, 196, 380
AluI	AGCT	3 cut(s)	182, 196, 380
Alw26I	GTCTC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	435
ApeKI	GCWGC	2 cut(s)	182, 482
ApoI	RAATTY	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	3 cut(s)	35, 271, 435
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	420
AvaII	GGWCC	2 cut(s)	35, 271
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	453
BbsI	GAAGAC	3 cut(s)	54, 135, 551
BbvI	GCAGC	2 cut(s)	169, 494
BccI	CCATC	1 cut(s)	404
BciT130I	CCWGG	2 cut(s)	153, 613
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	557
BfrI	CTTAAG	1 cut(s)	308
BisI	GCNGC	2 cut(s)	183, 483
BlsI	GCNGC	2 cut(s)	184, 484
Bme1390I	CCNGG	3 cut(s)	153, 401, 613
Bme18I	GGWCC	2 cut(s)	35, 271
BmgT120I	GGNCC	3 cut(s)	35, 271, 435
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	3 cut(s)	153, 401, 613
BpiI	GAAGAC	3 cut(s)	54, 135, 551
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpuMI	CCSGG	1 cut(s)	401
Bsa29I	ATCGAT	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	431
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 105, 612
Bse1I	ACTGG	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	153, 613
BseCI	ATCGAT	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	3 cut(s)	91, 105, 612
BseMII	CTCAG	3 cut(s)	200, 309, 564
BseNI	ACTGG	1 cut(s)	261
BseRI	GAGGAG	2 cut(s)	349, 352
BseXI	GCAGC	2 cut(s)	169, 494
BseYI	CCCAGC	1 cut(s)	380
BshFI	GGCC	1 cut(s)	437
BshNI	GGYRCC	1 cut(s)	155
BshVI	ATCGAT	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	400
BslI	CCNNNNNNNGG	3 cut(s)	91, 105, 612
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	453
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	437
BspCNI	CTCAG	3 cut(s)	201, 310, 565
BspDI	ATCGAT	1 cut(s)	371
BspLI	GGNNCC	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	155
BspTI	CTTAAG	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	153, 613
Bst4CI	ACNGT	2 cut(s)	58, 136
BstAFI	CTTAAG	1 cut(s)	308
BstDEI	CTNAG	3 cut(s)	209, 318, 573
BstF5I	GGATG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	618
BstMAI	GTCTC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	2 cut(s)	153, 613
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	3 cut(s)	151, 399, 611
BstSFI	CTRYAG	1 cut(s)	557
BstV1I	GCAGC	2 cut(s)	169, 494
BstV2I	GAAGAC	3 cut(s)	54, 135, 551
Bsu15I	ATCGAT	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	437
BsuTUI	ATCGAT	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	6 cut(s)	54, 68, 127, 141, 254, 570
CfoI	GCGC	1 cut(s)	618
Cfr13I	GGNCC	3 cut(s)	35, 271, 435
ClaI	ATCGAT	1 cut(s)	371
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	8 cut(s)	182, 196, 380, 437, 451, 485, 503, 605
CviKI_1	RGCY	8 cut(s)	182, 196, 380, 437, 451, 485, 503, 605
DdeI	CTNAG	3 cut(s)	209, 318, 573
Eco130I	CCWWGG	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	35, 271
Eco57I	CTGAAG	1 cut(s)	621
EcoRII	CCWGG	2 cut(s)	151, 611
EcoT14I	CCWWGG	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	1 cut(s)	269
FaiI	YATR	5 cut(s)	267, 303, 329, 458, 567
FatI	CATG	1 cut(s)	265
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	183, 483
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	2 cut(s)	183, 483
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	2 cut(s)	183, 483
GsaI	CCCAGC	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	437
HapII	CCGG	1 cut(s)	400
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	1 cut(s)	269
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HincII	GTYRAC	2 cut(s)	228, 286
HindII	GTYRAC	2 cut(s)	228, 286
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	3 cut(s)	314, 368, 553
HpaI	GTTAAC	1 cut(s)	228
HpaII	CCGG	1 cut(s)	400
HphI	GGTGA	1 cut(s)	420
Hpy166II	GTNNAC	3 cut(s)	228, 271, 286
Hpy188I	TCNGA	2 cut(s)	319, 352
Hpy188III	TCNNGA	3 cut(s)	26, 462, 472
Hpy8I	GTNNAC	3 cut(s)	228, 271, 286
HpyAV	CCTTC	2 cut(s)	357, 472
HpyCH4III	ACNGT	2 cut(s)	58, 136
HpyCH4V	TGCA	1 cut(s)	559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	3 cut(s)	209, 318, 573
Hsp92II	CATG	1 cut(s)	269
HspAI	GCGC	1 cut(s)	616
KspAI	GTTAAC	1 cut(s)	228
LpnPI	CCDG	8 cut(s)	11, 138, 165, 242, 287, 366, 413, 598
Lsp1109I	GCAGC	2 cut(s)	169, 494
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	49, 426
MboII	GAAGA	5 cut(s)	54, 140, 487, 507, 556
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	3 cut(s)	87, 102, 465
MnlI	CCTC	9 cut(s)	76, 118, 241, 327, 330, 378, 502, 521, 568
MseI	TTAA	3 cut(s)	192, 227, 309
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	3 cut(s)	153, 401, 613
MvaI	CCWGG	2 cut(s)	153, 613
MwoI	GCNNNNNNNGC	1 cut(s)	509
NciI	CCSGG	1 cut(s)	401
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	426
NspI	RCATGY	1 cut(s)	269
PfeI	GAWTC	3 cut(s)	314, 368, 553
PflMI	CCANNNNNTGG	1 cut(s)	612
PkrI	GCNGC	2 cut(s)	184, 484
PsiI	TTATAA	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	151, 611
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	2 cut(s)	151, 611
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	3 cut(s)	35, 271, 435
PstI	CTGCAG	1 cut(s)	561
SaqAI	TTAA	3 cut(s)	192, 227, 309
SatI	GCNGC	2 cut(s)	183, 483
Sau96I	GGNCC	3 cut(s)	35, 271, 435
ScrFI	CCNGG	3 cut(s)	153, 401, 613
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	8 cut(s)	184, 198, 233, 276, 291, 382, 433, 585
SfcI	CTRYAG	1 cut(s)	557
SinI	GGWCC	2 cut(s)	35, 271
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	3 cut(s)	87, 102, 465
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	3 cut(s)	151, 399, 611
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	2 cut(s)	58, 136
TaqI	TCGA	2 cut(s)	371, 461
TasI	AATT	3 cut(s)	87, 102, 465
TfiI	GAWTC	3 cut(s)	314, 368, 553
Tru1I	TTAA	3 cut(s)	192, 227, 309
Tru9I	TTAA	3 cut(s)	192, 227, 309
TscAI	CASTG	6 cut(s)	61, 75, 127, 141, 261, 577
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	2 cut(s)	182, 482
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	6 cut(s)	61, 75, 127, 141, 261, 577
Van91I	CCANNNNNTGG	1 cut(s)	612
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	35, 271
XapI	RAATTY	1 cut(s)	465
XceI	RCATGY	1 cut(s)	269
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.