Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002574

Physical Location & Seq

Genomic Coordinates Reverse (-)

223473 .. 224858

Gene Structure 1386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G002400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCATCAATGAGTACTGAAAGCTCTGTGTGGCAGTGGTCAGCTGGTAAAGATCAATTCAATTTCCATCATCATCAAGTGATGGCCTCTGGCTCTGGCCCTGGCTCTGCAGCTGATGATCAGTACCAAACATGGAGGGCAGTGGCATCAAGGCTTGCACTTGACAATCAATTCAGAAATATGACAGAAAGACATGAGTATTACTCAAATGCAAATATTGATCAAGAAGATGAGGAGGAGGAAGACTTGAATAATAATAATTATTATTGTTATTATAGGAAGACTAATTTCAACAATAATCTTAATATGCCTTTGCGATTGAGATCGTTAGAGGAGTTGAAAGGTGATCAGCAGCAGCAGCAGCAGAGTAACACTAGTCATGATAAGTGGCATAAGAGTTTGCCTCAGGCTGAAATGCTGCCTAGGAATGAGGTCTTGGGTGGTTACATTTTCGTGTGTAACAATGAGACTATGCAAGAGGATCTCCATCGCCAACTCTTCGGGCTCCCACAGAAATATAAGGACTCTGTTAGGGCAATAACCCCAGGCTTACCCCTTTTTCTTTATAACTACACAGCCCACCAGCTGCATGGAGTATTTCAGGCTGTAAGTTTTGGAGGGTCAAACATTGACCCAACAGCGTGGGAAGACAAGAAGTGCAGAGGAGAATCAAGATTTCCAGCTCAGGTTAGAATTCGAGTGAAGGAAAGGTGCAAACCATTAGAAGAGGATGCTTTCAGGCCAATACTTTACCACTATGATGGCCCTAAGTTTCGTTTACAGCTCTCTGTGCCTGAGGTCATTTTATTTCTTTACATTTTGTTTTCTTTTTACAATGCTATATATTTCAGACAATTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

288

Amino Acids

33.72

Weight (kDa)

6.07

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27090 AT3G27090 AT3G27090
fragaria_vesca	FvH4_6g53510 FvH4_6g53510 FvH4_6g53510
malus_domestica	MD00G1139300.v1.1 MD09G1011000.v1.1
prunus_persica	Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.8G002400_v2.0.a1
pyrus_communis	pycom111g00920 pycom17g00940
rosa_chinensis	RchiOBHm_Chr2g0175541 RchiOBHm_Chr6g0249531
rosa_laevigata	RLG00000015572 RLG00000022337
rosa_multiflora	Rmu_co8403361.1_g000001 Rmu_sc0008219.1_g000003 Rmu_sc0021955.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217590
rosa_rugosa	Rorug02G0586000 Rorug02G0586100 Rorug02G0586200 Rorug02G0586300 Rorug02G0586400 Rorug02G0586500 Rorug05G0493300
rosa_samantha	Rh2AG665200 Rh2BG676000 Rh2CG639200 Rh2DG690000 Rh6AG003000 Rh6BG007100 Rh6CG002000 Rh6DG002000
rosa_wichuraiana	Rw2G054530 Rw6G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AclWI	GGATC	1 cut(s)	489
AcsI	RAATTY	1 cut(s)	693
AfaI	GTAC	2 cut(s)	16, 125
AgsI	TTSAA	4 cut(s)	61, 250, 292, 340
AhlI	ACTAGT	1 cut(s)	374
AjnI	CCWGG	2 cut(s)	100, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	6 cut(s)	24, 44, 113, 586, 683, 784
AluI	AGCT	6 cut(s)	24, 44, 113, 586, 683, 784
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	489
AoxI	GGCC	4 cut(s)	84, 97, 740, 763
ApeKI	GCWGC	7 cut(s)	110, 352, 355, 358, 361, 418, 586
ApoI	RAATTY	1 cut(s)	693
AspA2I	CCTAGG	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	98, 764
AsuHPI	GGTGA	1 cut(s)	356
AvrII	CCTAGG	1 cut(s)	422
AxyI	CCTNAGG	2 cut(s)	405, 795
BanII	GRGCYC	1 cut(s)	507
BbsI	GAAGAC	3 cut(s)	249, 287, 654
BbvI	GCAGC	7 cut(s)	122, 364, 367, 370, 373, 405, 573
BccI	CCATC	4 cut(s)	75, 76, 495, 755
BciT130I	CCWGG	2 cut(s)	102, 546
BclI	TGATCA	3 cut(s)	118, 220, 346
BcoDI	GTCTC	1 cut(s)	461
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	2 cut(s)	375, 423
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	7 cut(s)	111, 353, 356, 359, 362, 419, 587
BlnI	CCTAGG	1 cut(s)	422
BlsI	GCNGC	7 cut(s)	112, 354, 357, 360, 363, 420, 588
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	102, 546
BmgT120I	GGNCC	2 cut(s)	98, 764
BmiI	GGNNCC	1 cut(s)	506
BmrFI	CCNGG	2 cut(s)	102, 546
BmsI	GCATC	2 cut(s)	155, 721
BpiI	GAAGAC	3 cut(s)	249, 287, 654
BplI	GAGNNNNNCTC	4 cut(s)	188, 220, 388, 420
Bpu10I	CCTNAGC	1 cut(s)	684
BsaBI	GATNNNNATC	2 cut(s)	322, 486
BsaJI	CCNNGG	3 cut(s)	100, 422, 544
Bse21I	CCTNAGG	2 cut(s)	405, 795
Bse8I	GATNNNNATC	2 cut(s)	322, 486
BseBI	CCWGG	2 cut(s)	102, 546
BseDI	CCNNGG	3 cut(s)	100, 422, 544
BseGI	GGATG	1 cut(s)	736
BseJI	GATNNNNATC	2 cut(s)	322, 486
BseMII	CTCAG	3 cut(s)	419, 698, 786
BseRI	GAGGAG	4 cut(s)	248, 251, 347, 678
BseXI	GCAGC	7 cut(s)	122, 364, 367, 370, 373, 405, 573
BsgI	GTGCAG	1 cut(s)	679
BshFI	GGCC	4 cut(s)	86, 99, 742, 765
BsmAI	GTCTC	1 cut(s)	461
BsnI	GGCC	4 cut(s)	86, 99, 742, 765
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	6 cut(s)	52, 118, 220, 323, 346, 481
BspANI	GGCC	4 cut(s)	86, 99, 742, 765
BspCNI	CTCAG	3 cut(s)	418, 697, 787
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	506
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	489
BssECI	CCNNGG	3 cut(s)	100, 422, 544
BssMI	GATC	6 cut(s)	52, 118, 220, 323, 346, 481
BssT1I	CCWWGG	1 cut(s)	422
Bst2UI	CCWGG	2 cut(s)	102, 546
Bst6I	CTCTTC	2 cut(s)	503, 720
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	4 cut(s)	405, 684, 768, 795
BstF5I	GGATG	1 cut(s)	736
BstKTI	GATC	6 cut(s)	55, 121, 223, 326, 349, 484
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	6 cut(s)	52, 118, 220, 323, 346, 481
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 361, 790
BstNI	CCWGG	2 cut(s)	102, 546
BstSCI	CCNGG	2 cut(s)	100, 544
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	7 cut(s)	122, 364, 367, 370, 373, 405, 573
BstV2I	GAAGAC	3 cut(s)	249, 287, 654
BstX2I	RGATCY	1 cut(s)	481
BstXI	CCANNNNNNTGG	3 cut(s)	590, 642, 761
BstYI	RGATCY	1 cut(s)	481
Bsu36I	CCTNAGG	2 cut(s)	405, 795
BsuRI	GGCC	4 cut(s)	86, 99, 742, 765
BtgZI	GCGATG	1 cut(s)	473
BtsCI	GGATG	1 cut(s)	736
BtsI	GCAGTG	2 cut(s)	41, 147
BtsIMutI	CAGTG	2 cut(s)	41, 147
Cac8I	GCNNGC	1 cut(s)	156
CciI	TCATGA	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	98, 764
Csp6I	GTAC	2 cut(s)	15, 124
CviAII	CATG	4 cut(s)	132, 194, 380, 590
CviQI	GTAC	2 cut(s)	15, 124
DdeI	CTNAG	4 cut(s)	405, 684, 768, 795
DpnI	GATC	6 cut(s)	54, 120, 222, 325, 348, 483
DpnII	GATC	6 cut(s)	52, 118, 220, 323, 346, 481
Eam1104I	CTCTTC	2 cut(s)	503, 720
EarI	CTCTTC	2 cut(s)	503, 720
Eco130I	CCWWGG	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	507
Eco81I	CCTNAGG	2 cut(s)	405, 795
EcoRI	GAATTC	1 cut(s)	693
EcoRII	CCWGG	2 cut(s)	100, 544
EcoT14I	CCWWGG	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	4 cut(s)	135, 197, 383, 593
FatI	CATG	4 cut(s)	131, 193, 379, 589
FbaI	TGATCA	3 cut(s)	118, 220, 346
Fnu4HI	GCNGC	7 cut(s)	111, 353, 356, 359, 362, 419, 587
FokI	GGATG	1 cut(s)	743
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	7 cut(s)	111, 353, 356, 359, 362, 419, 587
FspBI	CTAG	2 cut(s)	375, 423
GluI	GCNGC	7 cut(s)	111, 353, 356, 359, 362, 419, 587
HaeIII	GGCC	4 cut(s)	86, 99, 742, 765
Hin1II	CATG	4 cut(s)	135, 197, 383, 593
HinfI	GANTC	2 cut(s)	524, 668
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	779
Hpy188I	TCNGA	2 cut(s)	176, 851
Hpy188III	TCNNGA	3 cut(s)	224, 380, 672
Hpy8I	GTNNAC	1 cut(s)	779
HpyAV	CCTTC	1 cut(s)	697
HpyCH4V	TGCA	7 cut(s)	110, 158, 212, 475, 589, 660, 714
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 361, 790
HpyF3I	CTNAG	4 cut(s)	405, 684, 768, 795
Hsp92II	CATG	4 cut(s)	135, 197, 383, 593
Ksp22I	TGATCA	3 cut(s)	118, 220, 346
Kzo9I	GATC	6 cut(s)	52, 118, 220, 323, 346, 481
LmnI	GCTCC	1 cut(s)	510
Lsp1109I	GCAGC	7 cut(s)	122, 364, 367, 370, 373, 405, 573
LweI	GCATC	2 cut(s)	155, 721
MaeI	CTAG	2 cut(s)	375, 423
MaeIII	GTNAC	3 cut(s)	368, 443, 458
MalI	GATC	6 cut(s)	54, 120, 222, 325, 348, 483
MboI	GATC	6 cut(s)	52, 118, 220, 323, 346, 481
MboII	GAAGA	6 cut(s)	239, 254, 292, 490, 659, 737
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	7 cut(s)	56, 61, 170, 259, 286, 693, 854
MlyI	GAGTC	1 cut(s)	518
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	2 cut(s)	452, 759
MspA1I	CMGCKG	3 cut(s)	44, 113, 586
MspR9I	CCNGG	2 cut(s)	102, 546
MvaI	CCWGG	2 cut(s)	102, 546
MwoI	GCNNNNNNNGC	3 cut(s)	358, 361, 790
NdeII	GATC	6 cut(s)	52, 118, 220, 323, 346, 481
NlaIII	CATG	4 cut(s)	135, 197, 383, 593
NlaIV	GGNNCC	1 cut(s)	506
PagI	TCATGA	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	668
PkrI	GCNGC	7 cut(s)	112, 354, 357, 360, 363, 420, 588
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
PsiI	TTATAA	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	100, 544
PspGI	CCWGG	2 cut(s)	100, 544
PspN4I	GGNNCC	1 cut(s)	506
PspPI	GGNCC	2 cut(s)	98, 764
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	481
PvuII	CAGCTG	3 cut(s)	44, 113, 586
RsaI	GTAC	2 cut(s)	16, 125
RsaNI	GTAC	2 cut(s)	15, 124
RseI	CAYNNNNRTG	2 cut(s)	452, 759
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	7 cut(s)	111, 353, 356, 359, 362, 419, 587
Sau3AI	GATC	6 cut(s)	52, 118, 220, 323, 346, 481
Sau96I	GGNCC	2 cut(s)	98, 764
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	2 cut(s)	102, 546
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	2 cut(s)	155, 721
SfcI	CTRYAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	2 cut(s)	452, 759
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	7 cut(s)	56, 61, 170, 259, 286, 693, 854
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	375, 423
StyD4I	CCNGG	2 cut(s)	100, 544
StyI	CCWWGG	1 cut(s)	422
TaqI	TCGA	1 cut(s)	697
TasI	AATT	7 cut(s)	56, 61, 170, 259, 286, 693, 854
TatI	WGTACW	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	41, 147
TseI	GCWGC	7 cut(s)	110, 352, 355, 358, 361, 418, 586
TspRI	CASTG	2 cut(s)	41, 147
XapI	RAATTY	1 cut(s)	693
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XmaJI	CCTAGG	1 cut(s)	422
XspI	CTAG	2 cut(s)	375, 423
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.