Rh6AG003000

DCD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002574
Physical Location & Seq
Reverse (-)
573822 .. 575884
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG003000.1

Sequence Viewer

Length: 942 bp
ATGTCAATGAGTAATTACAGTAAGATGAGTAGTAGCTCTGTGTGGCAGTTGTCAGTTACTACTCGTAAGGATGATGTACTACAATATCATGATGATCCGGTGGTCATGGCCTCCCGAGAAGCTGATCATGATCAGTATCAAACACGGACAGCAGCAACAAGAGTAGCACTGATTGACAATCAATTGATGCAAATGACTACTACTGCCGCAGAATACTCAGATGATGAAGATCATAATAAGAAGGATTGTTATTATCGTTATGGAAAGAGTAGTAGTTCCAATTTGAAGAACAACAACAATATGAGTTATGCGGCATTGAAATTGTTAGAAATGAAATTAGGCAGCGTGCAGGCTGTGCAGCATAACAAAAAGTCCCTTCATTACTATGTGCAGCAACAGCAGCAGCAGAGTGATAGTGAGAGTAGTGAGATGATGAGCAGTAGTCATGACAATGATTATTGTTATTACAATAAGCAGCAGCAGGTGTGGCATAAGACGCTGCCTCAGGCTGAAATGCTGCCTAGAAATGAAGTCTTGGGAGGTTACATTTTTGTATGCAACAACGAAACCATGCAAGAGGATCTCCACCGTCAACTCTTCGGACTCCCTCAAAAGTACAAGGACTCCGTAAGCGCAATTACCCCAGGCTTACCCCTTTTTCTTTACAACTACACAGCCCACCAGCTCCATGGAGTTTTTCAGGCTGTGAGTTTTGGAGGATCAAACATCGATCCAACAGCGTGGGAAGACAAGAAATCCAAAGGAGAATCAAGATTTCCAGCACAAGTTAGAATTCGAGCCAAGGAAAGGTGCAAACCACTAGAAGAGGATGCTTTTAGGCCAATACTCTACCACTATGATGGCCCAAAGTTTCGTTTACAACTCTCTGTGCCTGAGGTGCTTGCATTGTTAGACTTATTCAAAGAAGATCACCGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dev_Cell_Death

Protein Analysis

313

Amino Acids

36.17

Weight (kDa)

6.31

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dev_Cell_Death PF10539 180 - 307 3e-41 Development and cell death domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
Acc36I ACCTGC 1 cut(s) 472
AciI CCGC 2 cut(s) 207, 311
AclWI GGATC 4 cut(s) 89, 588, 725, 727
AcsI RAATTY 1 cut(s) 792
AfaI GTAC 2 cut(s) 78, 617
AfiI CCNNNNNNNGG 1 cut(s) 807
AgsI TTSAA 3 cut(s) 286, 319, 922
AjnI CCWGG 1 cut(s) 643
AluBI AGCT 3 cut(s) 36, 122, 685
AluI AGCT 3 cut(s) 36, 122, 685
AlwI GGATC 4 cut(s) 89, 588, 725, 727
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 3 cut(s) 108, 839, 862
ApoI RAATTY 1 cut(s) 792
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 1 cut(s) 863
AsuHPI GGTGA 1 cut(s) 923
AvaI CYCGRG 1 cut(s) 114
AxyI CCTNAGG 2 cut(s) 504, 894
BbsI GAAGAC 1 cut(s) 753
BccI CCATC 1 cut(s) 854
BciT130I CCWGG 1 cut(s) 645
BclI TGATCA 2 cut(s) 124, 130
BfaI CTAG 2 cut(s) 522, 821
BfuAI ACCTGC 1 cut(s) 472
Bme1390I CCNGG 1 cut(s) 645
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 863
BmrFI CCNGG 1 cut(s) 645
BmsI GCATC 2 cut(s) 177, 820
BpiI GAAGAC 1 cut(s) 753
Bsa29I ATCGAT 1 cut(s) 729
BsaBI GATNNNNATC 3 cut(s) 129, 135, 228
BsaJI CCNNGG 3 cut(s) 643, 688, 801
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 608, 638
Bsc4I CCNNNNNNNGG 1 cut(s) 807
Bse118I RCCGGY 1 cut(s) 933
Bse21I CCTNAGG 2 cut(s) 504, 894
Bse8I GATNNNNATC 3 cut(s) 129, 135, 228
BseBI CCWGG 1 cut(s) 645
BseCI ATCGAT 1 cut(s) 729
BseDI CCNNGG 3 cut(s) 643, 688, 801
BseGI GGATG 2 cut(s) 76, 835
BseJI GATNNNNATC 3 cut(s) 129, 135, 228
BseLI CCNNNNNNNGG 1 cut(s) 807
BseMII CTCAG 3 cut(s) 231, 518, 885
BsgI GTGCAG 3 cut(s) 368, 377, 410
BshFI GGCC 3 cut(s) 110, 841, 864
BshVI ATCGAT 1 cut(s) 729
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 2 cut(s) 98, 934
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 807
BsmFI GGGAC 1 cut(s) 358
BsnI GGCC 3 cut(s) 110, 841, 864
BsoBI CYCGRG 1 cut(s) 114
Bsp143I GATC 8 cut(s) 94, 124, 130, 229, 580, 719, 730, 928
Bsp19I CCATGG 1 cut(s) 688
BspACI CCGC 2 cut(s) 207, 311
BspANI GGCC 3 cut(s) 110, 841, 864
BspCNI CTCAG 3 cut(s) 230, 517, 886
BspDI ATCGAT 1 cut(s) 729
BspHI TCATGA 3 cut(s) 88, 127, 445
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 4 cut(s) 89, 588, 725, 727
BsrFI RCCGGY 1 cut(s) 933
BssAI RCCGGY 1 cut(s) 933
BssECI CCNNGG 3 cut(s) 643, 688, 801
BssMI GATC 8 cut(s) 94, 124, 130, 229, 580, 719, 730, 928
BssT1I CCWWGG 2 cut(s) 688, 801
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 2 cut(s) 20, 590
Bst6I CTCTTC 2 cut(s) 602, 819
BstAPI GCANNNNNTGC 1 cut(s) 355
BstC8I GCNNGC 3 cut(s) 347, 351, 903
BstDEI CTNAG 3 cut(s) 217, 504, 894
BstDSI CCRYGG 1 cut(s) 688
BstF5I GGATG 2 cut(s) 76, 835
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 8 cut(s) 97, 127, 133, 232, 583, 722, 733, 931
BstMBI GATC 8 cut(s) 94, 124, 130, 229, 580, 719, 730, 928
BstMWI GCNNNNNNNGC 6 cut(s) 355, 397, 400, 487, 496, 898
BstNI CCWGG 1 cut(s) 645
BstSCI CCNGG 1 cut(s) 643
BstV2I GAAGAC 1 cut(s) 753
BstX2I RGATCY 1 cut(s) 580
BstXI CCANNNNNNTGG 3 cut(s) 689, 741, 860
BstYI RGATCY 1 cut(s) 580
Bsu15I ATCGAT 1 cut(s) 729
Bsu36I CCTNAGG 2 cut(s) 504, 894
BsuRI GGCC 3 cut(s) 110, 841, 864
BsuTUI ATCGAT 1 cut(s) 729
BtgI CCRYGG 1 cut(s) 688
BtsCI GGATG 2 cut(s) 76, 835
BtsIMutI CAGTG 1 cut(s) 167
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 3 cut(s) 347, 351, 903
CciI TCATGA 3 cut(s) 88, 127, 445
CfoI GCGC 1 cut(s) 635
Cfr10I RCCGGY 1 cut(s) 933
Cfr13I GGNCC 1 cut(s) 863
ClaI ATCGAT 1 cut(s) 729
CseI GACGC 1 cut(s) 505
Csp6I GTAC 2 cut(s) 77, 616
CviAII CATG 6 cut(s) 89, 106, 128, 446, 571, 689
CviQI GTAC 2 cut(s) 77, 616
DdeI CTNAG 3 cut(s) 217, 504, 894
DpnI GATC 8 cut(s) 96, 126, 132, 231, 582, 721, 732, 930
DpnII GATC 8 cut(s) 94, 124, 130, 229, 580, 719, 730, 928
Eam1104I CTCTTC 2 cut(s) 602, 819
EarI CTCTTC 2 cut(s) 602, 819
Eco130I CCWWGG 2 cut(s) 688, 801
Eco81I CCTNAGG 2 cut(s) 504, 894
Eco88I CYCGRG 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 792
EcoRII CCWGG 1 cut(s) 643
EcoT14I CCWWGG 2 cut(s) 688, 801
ErhI CCWWGG 2 cut(s) 688, 801
FaeI CATG 6 cut(s) 92, 109, 131, 449, 574, 692
FaqI GGGAC 1 cut(s) 358
FatI CATG 6 cut(s) 88, 105, 127, 445, 570, 688
FbaI TGATCA 2 cut(s) 124, 130
FokI GGATG 2 cut(s) 83, 842
FspBI CTAG 2 cut(s) 522, 821
GlaI GCGC 1 cut(s) 634
HaeIII GGCC 3 cut(s) 110, 841, 864
HapII CCGG 2 cut(s) 98, 934
HgaI GACGC 1 cut(s) 505
HhaI GCGC 1 cut(s) 635
Hin1II CATG 6 cut(s) 92, 109, 131, 449, 574, 692
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HincII GTYRAC 1 cut(s) 593
HindII GTYRAC 1 cut(s) 593
HinfI GANTC 3 cut(s) 603, 623, 767
HpaII CCGG 2 cut(s) 98, 934
HphI GGTGA 1 cut(s) 923
Hpy166II GTNNAC 2 cut(s) 593, 878
Hpy188I TCNGA 2 cut(s) 220, 602
Hpy188III TCNNGA 5 cut(s) 89, 114, 128, 446, 771
Hpy8I GTNNAC 2 cut(s) 593, 878
HpyAV CCTTC 2 cut(s) 235, 386
HpyCH4III ACNGT 2 cut(s) 20, 590
HpyCH4V TGCA 8 cut(s) 190, 349, 358, 391, 558, 574, 813, 905
HpyF10VI GCNNNNNNNGC 6 cut(s) 355, 397, 400, 487, 496, 898
HpyF3I CTNAG 3 cut(s) 217, 504, 894
Hsp92II CATG 6 cut(s) 92, 109, 131, 449, 574, 692
HspAI GCGC 1 cut(s) 633
Ksp22I TGATCA 2 cut(s) 124, 130
Kzo9I GATC 8 cut(s) 94, 124, 130, 229, 580, 719, 730, 928
LmnI GCTCC 1 cut(s) 690
LweI GCATC 2 cut(s) 177, 820
MaeI CTAG 2 cut(s) 522, 821
MaeIII GTNAC 2 cut(s) 55, 542
MalI GATC 8 cut(s) 96, 126, 132, 231, 582, 721, 732, 930
MboI GATC 8 cut(s) 94, 124, 130, 229, 580, 719, 730, 928
MboII GAAGA 6 cut(s) 239, 298, 589, 758, 836, 938
MfeI CAATTG 1 cut(s) 182
MflI RGATCY 1 cut(s) 580
MluCI AATT 7 cut(s) 13, 182, 280, 320, 335, 636, 792
MlyI GAGTC 2 cut(s) 597, 617
MmeI TCCRAC 1 cut(s) 758
MnlI CCTC 8 cut(s) 121, 513, 533, 571, 618, 710, 820, 889
MslI CAYNNNNRTG 3 cut(s) 384, 450, 858
MspI CCGG 2 cut(s) 98, 934
MspR9I CCNGG 1 cut(s) 645
MunI CAATTG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 645
MwoI GCNNNNNNNGC 6 cut(s) 355, 397, 400, 487, 496, 898
NcoI CCATGG 1 cut(s) 688
NdeII GATC 8 cut(s) 94, 124, 130, 229, 580, 719, 730, 928
NlaIII CATG 6 cut(s) 92, 109, 131, 449, 574, 692
PagI TCATGA 3 cut(s) 88, 127, 445
PaqCI CACCTGC 1 cut(s) 472
PfeI GAWTC 1 cut(s) 767
PleI GAGTC 2 cut(s) 597, 617
PpsI GAGTC 2 cut(s) 597, 617
Psp6I CCWGG 1 cut(s) 643
PspGI CCWGG 1 cut(s) 643
PspPI GGNCC 1 cut(s) 863
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 2 cut(s) 78, 617
RsaNI GTAC 2 cut(s) 77, 616
RseI CAYNNNNRTG 3 cut(s) 384, 450, 858
Sau3AI GATC 8 cut(s) 94, 124, 130, 229, 580, 719, 730, 928
Sau96I GGNCC 1 cut(s) 863
SchI GAGTC 2 cut(s) 597, 617
ScrFI CCNGG 1 cut(s) 645
SetI ASST 7 cut(s) 38, 124, 486, 544, 687, 812, 900
SfaNI GCATC 2 cut(s) 177, 820
SmiMI CAYNNNNRTG 3 cut(s) 384, 450, 858
Sse9I AATT 7 cut(s) 13, 182, 280, 320, 335, 636, 792
SsiI CCGC 2 cut(s) 207, 311
SspMI CTAG 2 cut(s) 522, 821
StyD4I CCNGG 1 cut(s) 643
StyI CCWWGG 2 cut(s) 688, 801
TaaI ACNGT 2 cut(s) 20, 590
TaqI TCGA 2 cut(s) 729, 796
TasI AATT 7 cut(s) 13, 182, 280, 320, 335, 636, 792
TatI WGTACW 2 cut(s) 76, 615
TauI GCSGC 2 cut(s) 209, 314
TfiI GAWTC 1 cut(s) 767
TscAI CASTG 1 cut(s) 174
TspDTI ATGAA 4 cut(s) 240, 347, 368, 543
TspGWI ACGGA 2 cut(s) 160, 616
TspRI CASTG 1 cut(s) 174
XapI RAATTY 1 cut(s) 792
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XspI CTAG 2 cut(s) 522, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.