Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021955.1

Orthogroup ID

OG0002574

Physical Location & Seq

Genomic Coordinates Forward (+)

32551 .. 34316

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021955.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggagagcatccatacctattggcagttgggtgatgagcttcgtggacagtcgaaagttgcagaggatcacaaatggttaatggttgcttccaaattggctgagcaaacaaggtcaaagggcgagcgcatgaataaccttgatctttcaaagggcccaactgaaacaagagcaagggacaaatttgggttccaggaagataacaaatttgaaagccttaactttaacatgttgaacttggacttgaaagtaaatgaaaatgtgagcaagagttcctttaggaatgggatttacaacatgaatgcagtttaccagaaaaacagtgcaagctttgtggggaacatgactggtaacaagtacaatggcaatcacctcagcaacaaggaaaccaacaacagcggtaataacaacaacaacaacaacaacgaaactgggaatgttgttgagaaaaggttcaagaccttgcctgcaactgagacacttccccgaaatgaggtgcttggaggttacatctttgtatgcaacaatgacacaatgcaggaagatttgaagcgacaactattcggtttacctccaaggtacagggactctgttcgggcgattacacctggcttacctctgtttctctacaactatacaacccaccaactgcatggcatttttgaggcatcaagctttggcggttcaaacattgatccaactgcttgggaagacaagaaatgtaaaggcgagtcaaggtttcctgcgcaggtaaggatctgtgttagaaaaatctgcaaggctctggaagaagattccttcaggccagtcttgcatcactatgatggtccaaagttccgtcttgagttgtcagttcccgagaccctggatctattggacctatgtgagcaagccggctctgcagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

302

Amino Acids

34.29

Weight (kDa)

7.05

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27090 AT3G27090 AT3G27090
fragaria_vesca	FvH4_6g53510 FvH4_6g53510 FvH4_6g53510
malus_domestica	MD00G1139300.v1.1 MD09G1011000.v1.1
prunus_persica	Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.3G306100_v2.0.a1 Prupe.8G002400_v2.0.a1
pyrus_communis	pycom111g00920 pycom17g00940
rosa_chinensis	RchiOBHm_Chr2g0175541 RchiOBHm_Chr6g0249531
rosa_laevigata	RLG00000015572 RLG00000022337
rosa_multiflora	Rmu_co8403361.1_g000001 Rmu_sc0008219.1_g000003 Rmu_sc0021955.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217590
rosa_rugosa	Rorug02G0586000 Rorug02G0586100 Rorug02G0586200 Rorug02G0586300 Rorug02G0586400 Rorug02G0586500 Rorug05G0493300
rosa_samantha	Rh2AG665200 Rh2BG676000 Rh2CG639200 Rh2DG690000 Rh6AG003000 Rh6BG007100 Rh6CG002000 Rh6DG002000
rosa_wichuraiana	Rw2G054530 Rw6G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	747
Acc36I	ACCTGC	1 cut(s)	739
AciI	CCGC	2 cut(s)	399, 681
AclWI	GGATC	4 cut(s)	75, 689, 764, 876
AcsI	RAATTY	2 cut(s)	182, 206
AcuI	CTGAAG	1 cut(s)	784
AfaI	GTAC	2 cut(s)	359, 581
AfiI	CCNNNNNNNGG	1 cut(s)	493
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	7 cut(s)	150, 212, 235, 247, 457, 550, 687
AjnI	CCWGG	3 cut(s)	192, 607, 864
AluBI	AGCT	3 cut(s)	40, 330, 675
AluI	AGCT	3 cut(s)	40, 330, 675
Alw26I	GTCTC	2 cut(s)	470, 854
AlwI	GGATC	4 cut(s)	75, 689, 764, 876
Ama87I	CYCGRG	1 cut(s)	857
AoxI	GGCC	2 cut(s)	154, 803
ApaI	GGGCCC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	902
ApoI	RAATTY	2 cut(s)	182, 206
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	2 cut(s)	129, 748
AspS9I	GGNCC	4 cut(s)	154, 155, 827, 877
AsuHPI	GGTGA	2 cut(s)	44, 362
AvaI	CYCGRG	1 cut(s)	857
AvaII	GGWCC	2 cut(s)	827, 877
BaeGI	GKGCMC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	717
BbvCI	CCTCAGC	1 cut(s)	374
BccI	CCATC	1 cut(s)	818
BciT130I	CCWGG	3 cut(s)	194, 609, 866
BcoDI	GTCTC	2 cut(s)	470, 854
BfmI	CTRYAG	1 cut(s)	900
BfuAI	ACCTGC	1 cut(s)	739
BisI	GCNGC	1 cut(s)	903
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	904
Bme1390I	CCNGG	3 cut(s)	194, 609, 866
Bme18I	GGWCC	2 cut(s)	827, 877
BmeT110I	CYCGRG	1 cut(s)	857
BmgT120I	GGNCC	4 cut(s)	154, 155, 827, 877
BmiI	GGNNCC	2 cut(s)	156, 191
BmrFI	CCNGG	3 cut(s)	194, 609, 866
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	3 cut(s)	18, 677, 823
BmuI	ACTGGG	1 cut(s)	441
BpiI	GAAGAC	1 cut(s)	717
Bpu10I	CCTNAGC	1 cut(s)	374
Bpu1102I	GCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	863
BsaI	GGTCTC	1 cut(s)	854
BsaJI	CCNNGG	2 cut(s)	575, 864
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse118I	RCCGGY	1 cut(s)	893
Bse1I	ACTGG	3 cut(s)	352, 436, 806
BseBI	CCWGG	3 cut(s)	194, 609, 866
BseDI	CCNNGG	2 cut(s)	575, 864
BseGI	GGATG	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMII	CTCAG	3 cut(s)	93, 388, 465
BseNI	ACTGG	3 cut(s)	352, 436, 806
BseSI	GKGCMC	1 cut(s)	158
BshFI	GGCC	2 cut(s)	156, 805
BsiHKCI	CYCGRG	1 cut(s)	857
BsiSI	CCGG	1 cut(s)	894
BslFI	GGGAC	2 cut(s)	191, 599
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	2 cut(s)	470, 854
BsmFI	GGGAC	2 cut(s)	191, 599
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	156, 805
Bso31I	GGTCTC	1 cut(s)	854
BsoBI	CYCGRG	1 cut(s)	857
Bsp120I	GGGCCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	5 cut(s)	67, 142, 694, 756, 868
Bsp1720I	GCTNAGC	1 cut(s)	102
BspACI	CCGC	2 cut(s)	399, 681
BspANI	GGCC	2 cut(s)	156, 805
BspCNI	CTCAG	3 cut(s)	94, 387, 466
BspLI	GGNNCC	2 cut(s)	156, 191
BspMAI	CTGCAG	1 cut(s)	904
BspMI	ACCTGC	1 cut(s)	739
BspPI	GGATC	4 cut(s)	75, 689, 764, 876
BspTNI	GGTCTC	1 cut(s)	854
BsrFI	RCCGGY	1 cut(s)	893
BsrI	ACTGG	3 cut(s)	352, 436, 806
BssAI	RCCGGY	1 cut(s)	893
BssECI	CCNNGG	2 cut(s)	575, 864
BssMI	GATC	5 cut(s)	67, 142, 694, 756, 868
BssT1I	CCWWGG	1 cut(s)	575
Bst2UI	CCWGG	3 cut(s)	194, 609, 866
Bst4CI	ACNGT	2 cut(s)	51, 323
BstC8I	GCNNGC	5 cut(s)	125, 328, 468, 891, 895
BstDEI	CTNAG	3 cut(s)	102, 374, 474
BstF5I	GGATG	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	129, 748
BstKTI	GATC	5 cut(s)	70, 145, 697, 759, 871
BstMAI	GTCTC	2 cut(s)	470, 854
BstMBI	GATC	5 cut(s)	67, 142, 694, 756, 868
BstMWI	GCNNNNNNNGC	2 cut(s)	811, 899
BstNI	CCWGG	3 cut(s)	194, 609, 866
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	3 cut(s)	192, 607, 864
BstSFI	CTRYAG	1 cut(s)	900
BstSLI	GKGCMC	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	2 cut(s)	756, 868
BstXI	CCANNNNNNTGG	2 cut(s)	653, 705
BstYI	RGATCY	2 cut(s)	756, 868
BsuRI	GGCC	2 cut(s)	156, 805
BtsCI	GGATG	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	739
Cac8I	GCNNGC	5 cut(s)	125, 328, 468, 891, 895
CfoI	GCGC	2 cut(s)	129, 748
Cfr10I	RCCGGY	1 cut(s)	893
Cfr13I	GGNCC	4 cut(s)	154, 155, 827, 877
Csp6I	GTAC	2 cut(s)	358, 580
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	5 cut(s)	130, 229, 298, 343, 653
CviQI	GTAC	2 cut(s)	358, 580
DdeI	CTNAG	3 cut(s)	102, 374, 474
DpnI	GATC	5 cut(s)	69, 144, 696, 758, 870
DpnII	GATC	5 cut(s)	67, 142, 694, 756, 868
Eco130I	CCWWGG	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	854
Eco47I	GGWCC	2 cut(s)	827, 877
Eco57I	CTGAAG	1 cut(s)	784
Eco88I	CYCGRG	1 cut(s)	857
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	3 cut(s)	192, 607, 864
EcoT14I	CCWWGG	1 cut(s)	575
EcoT38I	GRGCYC	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	5 cut(s)	133, 232, 301, 346, 656
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	2 cut(s)	191, 599
FatI	CATG	5 cut(s)	129, 228, 297, 342, 652
Fnu4HI	GCNGC	1 cut(s)	903
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	903
FspI	TGCGCA	1 cut(s)	747
GlaI	GCGC	2 cut(s)	128, 747
GluI	GCNGC	1 cut(s)	903
HaeIII	GGCC	2 cut(s)	156, 805
HapII	CCGG	1 cut(s)	894
HhaI	GCGC	2 cut(s)	129, 748
Hin1II	CATG	5 cut(s)	133, 232, 301, 346, 656
Hin6I	GCGC	2 cut(s)	127, 746
HinP1I	GCGC	2 cut(s)	127, 746
HindIII	AAGCTT	2 cut(s)	328, 673
HinfI	GANTC	3 cut(s)	587, 731, 794
HpaII	CCGG	1 cut(s)	894
HphI	GGTGA	2 cut(s)	44, 362
Hpy166II	GTNNAC	3 cut(s)	47, 310, 569
Hpy188III	TCNNGA	4 cut(s)	457, 785, 842, 857
Hpy8I	GTNNAC	3 cut(s)	47, 310, 569
HpyAV	CCTTC	1 cut(s)	808
HpyCH4III	ACNGT	2 cut(s)	51, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	811, 899
HpyF3I	CTNAG	3 cut(s)	102, 374, 474
Hsp92II	CATG	5 cut(s)	133, 232, 301, 346, 656
HspAI	GCGC	2 cut(s)	127, 746
KroI	GCCGGC	1 cut(s)	893
KroNI	GCCGGC	1 cut(s)	895
Kzo9I	GATC	5 cut(s)	67, 142, 694, 756, 868
LweI	GCATC	3 cut(s)	18, 677, 823
MaeIII	GTNAC	2 cut(s)	350, 506
MalI	GATC	5 cut(s)	69, 144, 696, 758, 870
MboI	GATC	5 cut(s)	67, 142, 694, 756, 868
MboII	GAAGA	5 cut(s)	209, 554, 722, 800, 803
MflI	RGATCY	2 cut(s)	756, 868
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	3 cut(s)	95, 182, 206
MlyI	GAGTC	2 cut(s)	581, 740
MmeI	TCCRAC	1 cut(s)	722
MnlI	CCTC	7 cut(s)	58, 383, 487, 497, 582, 627, 658
MroNI	GCCGGC	1 cut(s)	893
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	3 cut(s)	80, 219, 225
MslI	CAYNNNNRTG	2 cut(s)	819, 822
MspA1I	CMGCKG	1 cut(s)	399
MspI	CCGG	1 cut(s)	894
MspR9I	CCNGG	3 cut(s)	194, 609, 866
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	3 cut(s)	194, 609, 866
MwoI	GCNNNNNNNGC	2 cut(s)	811, 899
NaeI	GCCGGC	1 cut(s)	895
NdeII	GATC	5 cut(s)	67, 142, 694, 756, 868
NgoMIV	GCCGGC	1 cut(s)	893
NlaIII	CATG	5 cut(s)	133, 232, 301, 346, 656
NlaIV	GGNNCC	2 cut(s)	156, 191
NsbI	TGCGCA	1 cut(s)	747
NspI	RCATGY	1 cut(s)	232
PciI	ACATGT	1 cut(s)	228
PctI	GAATGC	1 cut(s)	307
PdiI	GCCGGC	1 cut(s)	895
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	794
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	904
PleI	GAGTC	2 cut(s)	581, 739
PpsI	GAGTC	2 cut(s)	581, 739
PscI	ACATGT	1 cut(s)	228
Psp6I	CCWGG	3 cut(s)	192, 607, 864
PspGI	CCWGG	3 cut(s)	192, 607, 864
PspN4I	GGNNCC	2 cut(s)	156, 191
PspOMI	GGGCCC	1 cut(s)	154
PspPI	GGNCC	4 cut(s)	154, 155, 827, 877
PstI	CTGCAG	1 cut(s)	904
PsuI	RGATCY	2 cut(s)	756, 868
RsaI	GTAC	2 cut(s)	359, 581
RsaNI	GTAC	2 cut(s)	358, 580
RseI	CAYNNNNRTG	2 cut(s)	819, 822
SaqAI	TTAA	3 cut(s)	80, 219, 225
SatI	GCNGC	1 cut(s)	903
Sau3AI	GATC	5 cut(s)	67, 142, 694, 756, 868
Sau96I	GGNCC	4 cut(s)	154, 155, 827, 877
SchI	GAGTC	2 cut(s)	581, 740
ScrFI	CCNGG	3 cut(s)	194, 609, 866
SduI	GDGCHC	1 cut(s)	158
SfaNI	GCATC	3 cut(s)	18, 677, 823
SfcI	CTRYAG	1 cut(s)	900
SinI	GGWCC	2 cut(s)	827, 877
SmiMI	CAYNNNNRTG	2 cut(s)	819, 822
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
Sse9I	AATT	3 cut(s)	95, 182, 206
SsiI	CCGC	2 cut(s)	399, 681
StyD4I	CCNGG	3 cut(s)	192, 607, 864
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	2 cut(s)	51, 323
TaqI	TCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	95, 182, 206
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	794
Tru1I	TTAA	3 cut(s)	80, 219, 225
Tru9I	TTAA	3 cut(s)	80, 219, 225
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	1 cut(s)	902
TspDTI	ATGAA	3 cut(s)	146, 270, 314
TspGWI	ACGGA	1 cut(s)	827
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	2 cut(s)	827, 877
XapI	RAATTY	2 cut(s)	182, 206
XceI	RCATGY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.