Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004190

Physical Location & Seq

Genomic Coordinates Forward (+)

8514001 .. 8517202

Gene Structure 3202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G149100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGGGAGAAGTAGGGTCTTCTTGCTATTGTTCTTGTTGGTATGGGTAACAGAAGGCCTTACCCAACCCAAGTTTTTCAATGTGATGGATTATGGAGCTGTTGGAGGTGGAAAAACTGATAACAGCAAGGCATTTTTGAAAGCATGGAGTGACGCATGCCAATGGAATGGAAAGTCCAGGGTCGTGGTTCCCCAAGGAACATTCAAGCTGTACCCAGTGATATTCTCAGGTCCATGCAATGGTCCGATTGCATTTGTGATTAGGGGGACTTTGAAGGCTACTACTGATCCATCAAGCTTTAGTGCTCATAGTTGGATAAACTTCCGGTACGTTGATGAGTTGACGGTAAGCGGCGGCGGTACCTTGGACGGCCAAGGAGCCTCGGCTTGGCATTTGAACAACTGCAAAAGTAATCCCCAATGCCAGGCTCTTCCTATTTCTATGAGCTTTGACTTCGTCACAAACGCAATAGTTCAACGCATCAAATCATACGATAGCAAGAATGCGCATTTCAAAGTCTTCGGCTGCCACAACATGGACTTCAGAAAAATCAGAATCTCAGCTCCTGCTGACAGCCCCAACACTGACGGAATAAAAATCGGAAGCTCATACCGCATCAGAATCGCCCGTTCACGGATTGCAACTGGCGATGACTGCGTGGCAATAGTGGAGGGAAGCAAAAGAATCCACGTCTCTAAAGTTTTCTGCGGTCCTGGGCATGGAATCAGCATTGGAAGCCTTGGAGGGTATGCGAATGAAGACGACGTCGTTGGAGTGGTTGTGAAGAACTGCACATTCTTGGGGACTAGCAATGGCGTGAGGATCAAAACTTGGGCTTCTCCTTATGCCAGCAAGGCTTCCAACTTTACGTTCCAGGACATTTTCATGGATGATGTCCTCAACCCCATTACCATCGATCAAGAATATTGCCCCAACCCTCCTTGCTCTCAGCAGACTTCTTCTTCGAGTGTGCAAATCAGCGACATTACATACAAGAACATATGGGGAAGGTCGTCATCGGAAGTAGCCGTTAGTCTGGTGTGCAGCAAAAGTAGGCCATGCAAGAATGTAGTGCTGGAAAATATCAACTTGGCCCATTCTAATCCCCCAGGACGTTCCAGTTCGGTCTGCTTACACGCCAAAGGCGCCTCTCATGGCTCCCAAACCCCTCCTCCTTGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

395

Amino Acids

42.6

Weight (kDa)

9.08

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78400
fragaria_vesca	FvH4_3g01611 FvH4_3g01620 FvH4_3g16670 FvH4_6g48250
malus_domestica	MD05G1208400.v1.1 MD10G1194900.v1.1
prunus_persica	Prupe.4G149100_v2.0.a1
pyrus_communis	pycom10g16830
rosa_chinensis	RchiOBHm_Chr5g0002411 RchiOBHm_Chr5g0027771
rosa_laevigata	RLG00000015288 RLG00000031030 RLG00000033042
rosa_multiflora	Rmu_co8379139.1_g000001 Rmu_sc0000920.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051830 Rroxscaffold_1G00051840 Rroxscaffold_1G00073440
rosa_rugosa	Rorug04G0396100 Rorug05G0101000 Rorug05G0517000
rosa_samantha	Rh5AG018900 Rh5AG195300 Rh5BG193600 Rh5CG020800 Rh5CG213900 Rh5DG019900 Rh5DG195600 Rh6CG028000 Rh6DG027300
rosa_wichuraiana	Rw5G001770 Rw5G017820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	768
Acc16I	TGCGCA	1 cut(s)	507
Acc65I	GGTACC	1 cut(s)	359
AccB1I	GGYRCC	2 cut(s)	359, 1145
AccB7I	CCANNNNNTGG	2 cut(s)	239, 535
AciI	CCGC	5 cut(s)	351, 354, 357, 613, 708
AclWI	GGATC	2 cut(s)	281, 830
AcoI	YGGCCR	1 cut(s)	370
AcuI	CTGAAG	1 cut(s)	526
AcyI	GRCGYC	2 cut(s)	765, 1146
AfaI	GTAC	3 cut(s)	212, 329, 361
AfiI	CCNNNNNNNGG	6 cut(s)	239, 387, 424, 535, 633, 719
AgsI	TTSAA	7 cut(s)	79, 139, 205, 274, 397, 476, 514
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	5 cut(s)	176, 423, 712, 873, 1108
AjuI	GAANNNNNNNTTGG	2 cut(s)	854, 886
AluBI	AGCT	6 cut(s)	98, 208, 297, 447, 563, 606
AluI	AGCT	6 cut(s)	98, 208, 297, 447, 563, 606
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	697
AlwI	GGATC	2 cut(s)	281, 830
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	4 cut(s)	55, 370, 1055, 1092
ApeKI	GCWGC	2 cut(s)	525, 1044
ArsI	GACNNNNNNTTYG	2 cut(s)	946, 978
Asp718I	GGTACC	1 cut(s)	359
AspLEI	GCGC	2 cut(s)	508, 1148
AspS9I	GGNCC	4 cut(s)	230, 242, 710, 1093
AvaII	GGWCC	3 cut(s)	230, 242, 710
BanI	GGYRCC	2 cut(s)	359, 1145
BbsI	GAAGAC	3 cut(s)	10, 511, 765
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	512, 1056
BccI	CCATC	3 cut(s)	79, 298, 920
BceAI	ACGGC	2 cut(s)	385, 1013
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BciT130I	CCWGG	5 cut(s)	178, 425, 714, 875, 1110
BcoDI	GTCTC	1 cut(s)	697
BfaI	CTAG	1 cut(s)	807
BfoI	RGCGCY	1 cut(s)	1149
BglI	GCCNNNNNGGC	1 cut(s)	854
BisI	GCNGC	4 cut(s)	352, 355, 526, 1045
BlsI	GCNGC	4 cut(s)	353, 356, 527, 1046
Bme1390I	CCNGG	5 cut(s)	178, 425, 714, 875, 1110
Bme18I	GGWCC	3 cut(s)	230, 242, 710
BmgBI	CACGTC	1 cut(s)	691
BmgT120I	GGNCC	4 cut(s)	230, 242, 710, 1093
BmiI	GGNNCC	5 cut(s)	189, 361, 379, 1147, 1159
BmrFI	CCNGG	5 cut(s)	178, 425, 714, 875, 1110
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	2 cut(s)	489, 624
BmuI	ACTGGG	1 cut(s)	209
BpiI	GAAGAC	3 cut(s)	10, 511, 765
Bsa29I	ATCGAT	1 cut(s)	915
BsaHI	GRCGYC	2 cut(s)	765, 1146
BsaJI	CCNNGG	8 cut(s)	177, 193, 363, 373, 381, 713, 739, 1108
BsaWI	WCCGGW	1 cut(s)	324
BsaXI	ACNNNNNCTCC	3 cut(s)	765, 795, 1156
Bsc4I	CCNNNNNNNGG	6 cut(s)	239, 387, 424, 535, 633, 719
Bse1I	ACTGG	3 cut(s)	215, 649, 1119
Bse3DI	GCAATG	2 cut(s)	244, 817
BseBI	CCWGG	5 cut(s)	178, 425, 714, 875, 1110
BseCI	ATCGAT	1 cut(s)	915
BseDI	CCNNGG	8 cut(s)	177, 193, 363, 373, 381, 713, 739, 1108
BseGI	GGATG	1 cut(s)	895
BseLI	CCNNNNNNNGG	6 cut(s)	239, 387, 424, 535, 633, 719
BseMI	GCAATG	2 cut(s)	244, 817
BseMII	CTCAG	3 cut(s)	240, 573, 962
BseNI	ACTGG	3 cut(s)	215, 649, 1119
BseRI	GAGGAG	1 cut(s)	1161
BseXI	GCAGC	2 cut(s)	512, 1056
BsgI	GTGCAG	2 cut(s)	775, 1063
BshFI	GGCC	4 cut(s)	57, 372, 1057, 1094
BshNI	GGYRCC	2 cut(s)	359, 1145
BshVI	ATCGAT	1 cut(s)	915
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	325
BslFI	GGGAC	2 cut(s)	280, 817
BslI	CCNNNNNNNGG	6 cut(s)	239, 387, 424, 535, 633, 719
BsmAI	GTCTC	1 cut(s)	697
BsmBI	CGTCTC	1 cut(s)	697
BsmFI	GGGAC	2 cut(s)	280, 817
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	4 cut(s)	57, 372, 1057, 1094
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	286, 822, 916
BspACI	CCGC	5 cut(s)	351, 354, 357, 613, 708
BspANI	GGCC	4 cut(s)	57, 372, 1057, 1094
BspCNI	CTCAG	3 cut(s)	239, 572, 961
BspDI	ATCGAT	1 cut(s)	915
BspLI	GGNNCC	5 cut(s)	189, 361, 379, 1147, 1159
BspPI	GGATC	2 cut(s)	281, 830
BspQI	GCTCTTC	1 cut(s)	435
BspT107I	GGYRCC	2 cut(s)	359, 1145
BsrDI	GCAATG	2 cut(s)	244, 817
BsrI	ACTGG	3 cut(s)	215, 649, 1119
BssECI	CCNNGG	8 cut(s)	177, 193, 363, 373, 381, 713, 739, 1108
BssMI	GATC	3 cut(s)	286, 822, 916
BssNI	GRCGYC	2 cut(s)	765, 1146
BssT1I	CCWWGG	4 cut(s)	193, 363, 373, 739
Bst2UI	CCWGG	5 cut(s)	178, 425, 714, 875, 1110
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	2 cut(s)	765, 1146
BstC8I	GCNNGC	2 cut(s)	157, 850
BstDEI	CTNAG	3 cut(s)	226, 559, 948
BstF5I	GGATG	1 cut(s)	895
BstH2I	RGCGCY	1 cut(s)	1149
BstHHI	GCGC	2 cut(s)	508, 1148
BstKTI	GATC	3 cut(s)	289, 825, 919
BstMAI	GTCTC	1 cut(s)	697
BstMBI	GATC	3 cut(s)	286, 822, 916
BstMWI	GCNNNNNNNGC	5 cut(s)	612, 654, 735, 854, 1145
BstNI	CCWGG	5 cut(s)	178, 425, 714, 875, 1110
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	5 cut(s)	176, 423, 712, 873, 1108
BstV1I	GCAGC	2 cut(s)	512, 1056
BstV2I	GAAGAC	3 cut(s)	10, 511, 765
BstXI	CCANNNNNNTGG	2 cut(s)	167, 184
Bsu15I	ATCGAT	1 cut(s)	915
BsuRI	GGCC	4 cut(s)	57, 372, 1057, 1094
BsuTUI	ATCGAT	1 cut(s)	915
BtgZI	GCGATG	1 cut(s)	663
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	1 cut(s)	895
BtsIMutI	CAGTG	2 cut(s)	222, 582
Cac8I	GCNNGC	2 cut(s)	157, 850
CaiI	CAGNNNCTG	1 cut(s)	566
CfoI	GCGC	2 cut(s)	508, 1148
Cfr13I	GGNCC	4 cut(s)	230, 242, 710, 1093
ClaI	ATCGAT	1 cut(s)	915
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	211, 328, 360
CviAII	CATG	8 cut(s)	144, 156, 234, 535, 719, 886, 1059, 1154
CviQI	GTAC	3 cut(s)	211, 328, 360
DdeI	CTNAG	3 cut(s)	226, 559, 948
DinI	GGCGCC	1 cut(s)	1147
DpnI	GATC	3 cut(s)	288, 824, 918
DpnII	GATC	3 cut(s)	286, 822, 916
EaeI	YGGCCR	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	4 cut(s)	193, 363, 373, 739
Eco147I	AGGCCT	1 cut(s)	57
Eco47I	GGWCC	3 cut(s)	230, 242, 710
Eco57I	CTGAAG	1 cut(s)	526
EcoRII	CCWGG	5 cut(s)	176, 423, 712, 873, 1108
EcoT14I	CCWWGG	4 cut(s)	193, 363, 373, 739
EgeI	GGCGCC	1 cut(s)	1147
EheI	GGCGCC	1 cut(s)	1147
ErhI	CCWWGG	4 cut(s)	193, 363, 373, 739
Esp3I	CGTCTC	1 cut(s)	697
FaeI	CATG	8 cut(s)	147, 159, 237, 538, 722, 889, 1062, 1157
FaqI	GGGAC	2 cut(s)	280, 817
FatI	CATG	8 cut(s)	143, 155, 233, 534, 718, 885, 1058, 1153
FauNDI	CATATG	1 cut(s)	1001
Fnu4HI	GCNGC	4 cut(s)	352, 355, 526, 1045
FokI	GGATG	1 cut(s)	902
Fsp4HI	GCNGC	4 cut(s)	352, 355, 526, 1045
FspAI	RTGCGCAY	1 cut(s)	507
FspBI	CTAG	1 cut(s)	807
FspI	TGCGCA	1 cut(s)	507
GlaI	GCGC	2 cut(s)	507, 1147
GluI	GCNGC	4 cut(s)	352, 355, 526, 1045
HaeII	RGCGCY	1 cut(s)	1149
HaeIII	GGCC	4 cut(s)	57, 372, 1057, 1094
HapII	CCGG	1 cut(s)	325
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	508, 1148
Hin1I	GRCGYC	2 cut(s)	765, 1146
Hin1II	CATG	8 cut(s)	147, 159, 237, 538, 722, 889, 1062, 1157
Hin6I	GCGC	2 cut(s)	506, 1146
HinP1I	GCGC	2 cut(s)	506, 1146
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	295
HinfI	GANTC	4 cut(s)	555, 621, 684, 723
HpaII	CCGG	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	342, 632
Hpy188I	TCNGA	6 cut(s)	246, 545, 554, 602, 620, 1021
Hpy188III	TCNNGA	1 cut(s)	920
Hpy8I	GTNNAC	2 cut(s)	342, 632
Hpy99I	CGWCG	2 cut(s)	767, 770
HpyAV	CCTTC	3 cut(s)	47, 268, 1002
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	5 cut(s)	330, 690, 765, 869, 1114
HpyCH4V	TGCA	8 cut(s)	237, 251, 405, 641, 792, 973, 1044, 1062
HpyF10VI	GCNNNNNNNGC	5 cut(s)	612, 654, 735, 854, 1145
HpyF3I	CTNAG	3 cut(s)	226, 559, 948
HpySE526I	ACGT	5 cut(s)	330, 690, 765, 869, 1114
Hsp92I	GRCGYC	2 cut(s)	765, 1146
Hsp92II	CATG	8 cut(s)	147, 159, 237, 538, 722, 889, 1062, 1157
HspAI	GCGC	2 cut(s)	506, 1146
KasI	GGCGCC	1 cut(s)	1145
KpnI	GGTACC	1 cut(s)	363
Kzo9I	GATC	3 cut(s)	286, 822, 916
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	4 cut(s)	95, 377, 568, 1163
Lsp1109I	GCAGC	2 cut(s)	512, 1056
LweI	GCATC	2 cut(s)	489, 624
MaeI	CTAG	1 cut(s)	807
MaeII	ACGT	5 cut(s)	330, 690, 765, 869, 1114
MaeIII	GTNAC	3 cut(s)	46, 149, 457
MalI	GATC	3 cut(s)	288, 824, 918
MboI	GATC	3 cut(s)	286, 822, 916
MboII	GAAGA	7 cut(s)	10, 422, 511, 770, 796, 951, 954
MhlI	GDGCHC	1 cut(s)	307
Mly113I	GGCGCC	1 cut(s)	1146
MmeI	TCCRAC	4 cut(s)	82, 293, 751, 885
MslI	CAYNNNNRTG	2 cut(s)	160, 884
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	5 cut(s)	178, 425, 714, 875, 1110
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	5 cut(s)	178, 425, 714, 875, 1110
MwoI	GCNNNNNNNGC	5 cut(s)	612, 654, 735, 854, 1145
NarI	GGCGCC	1 cut(s)	1146
NdeI	CATATG	1 cut(s)	1001
NdeII	GATC	3 cut(s)	286, 822, 916
NlaIII	CATG	8 cut(s)	147, 159, 237, 538, 722, 889, 1062, 1157
NlaIV	GGNNCC	5 cut(s)	189, 361, 379, 1147, 1159
NmeAIII	GCCGAG	1 cut(s)	362
NmuCI	GTSAC	2 cut(s)	149, 457
NsbI	TGCGCA	1 cut(s)	507
NspI	RCATGY	1 cut(s)	159
PaeI	GCATGC	1 cut(s)	159
PceI	AGGCCT	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	435
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	4 cut(s)	555, 621, 684, 723
PflFI	GACNNNGTC	2 cut(s)	455, 764
PflMI	CCANNNNNTGG	2 cut(s)	239, 535
PfoI	TCCNGGA	1 cut(s)	873
PkrI	GCNGC	4 cut(s)	353, 356, 527, 1046
PluTI	GGCGCC	1 cut(s)	1149
Psp6I	CCWGG	5 cut(s)	176, 423, 712, 873, 1108
PspGI	CCWGG	5 cut(s)	176, 423, 712, 873, 1108
PspN4I	GGNNCC	5 cut(s)	189, 361, 379, 1147, 1159
PspPI	GGNCC	4 cut(s)	230, 242, 710, 1093
PstNI	CAGNNNCTG	1 cut(s)	566
PsyI	GACNNNGTC	2 cut(s)	455, 764
RsaI	GTAC	3 cut(s)	212, 329, 361
RsaNI	GTAC	3 cut(s)	211, 328, 360
RseI	CAYNNNNRTG	2 cut(s)	160, 884
SapI	GCTCTTC	1 cut(s)	435
SatI	GCNGC	4 cut(s)	352, 355, 526, 1045
Sau3AI	GATC	3 cut(s)	286, 822, 916
Sau96I	GGNCC	4 cut(s)	230, 242, 710, 1093
ScrFI	CCNGG	5 cut(s)	178, 425, 714, 875, 1110
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	489, 624
SfoI	GGCGCC	1 cut(s)	1147
SinI	GGWCC	3 cut(s)	230, 242, 710
SmiMI	CAYNNNNRTG	2 cut(s)	160, 884
SphI	GCATGC	1 cut(s)	159
SseBI	AGGCCT	1 cut(s)	57
SsiI	CCGC	5 cut(s)	351, 354, 357, 613, 708
SspDI	GGCGCC	1 cut(s)	1145
SspI	AATATT	1 cut(s)	926
SspMI	CTAG	1 cut(s)	807
StuI	AGGCCT	1 cut(s)	57
StyD4I	CCNGG	5 cut(s)	176, 423, 712, 873, 1108
StyI	CCWWGG	4 cut(s)	193, 363, 373, 739
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	5 cut(s)	333, 693, 768, 872, 1117
TaqI	TCGA	2 cut(s)	915, 965
TaqII	GACCGA	1 cut(s)	1114
TauI	GCSGC	2 cut(s)	354, 357
TfiI	GAWTC	4 cut(s)	555, 621, 684, 723
TscAI	CASTG	2 cut(s)	222, 589
TseFI	GTSAC	2 cut(s)	149, 457
TseI	GCWGC	2 cut(s)	525, 1044
Tsp45I	GTSAC	2 cut(s)	149, 457
TspDTI	ATGAA	2 cut(s)	771, 874
TspGWI	ACGGA	2 cut(s)	603, 649
TspRI	CASTG	2 cut(s)	222, 589
Tth111I	GACNNNGTC	2 cut(s)	455, 764
Van91I	CCANNNNNTGG	2 cut(s)	239, 535
VpaK11BI	GGWCC	3 cut(s)	230, 242, 710
XceI	RCATGY	1 cut(s)	159
XspI	CTAG	1 cut(s)	807
ZraI	GACGTC	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.