Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8379139.1

Orthogroup ID

OG0004190

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 814

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8379139.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggattatggagctgttgaaggtggaataactgataacagccaggcatttttgaaagcatggaatgatgcctgtaaatggactggaagggcaagggttttggttccccgaggaatattcaagttattcccagttgtattctcaggtccatgcaatggtccgattgcctttttgatcatggggactttaagagcctctactaatccatcaacatttaattctgaaaattggataaacttccgatacttggagcagttaaccgtagccggaggcggtaccttggacggccaaggatcctttgtttggcctcttaacaactgcaacaatcgtccatgcaagacactcccaatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

117

Amino Acids

12.8

Weight (kDa)

8.84

Isoelectric Point (pI)

17.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78400
fragaria_vesca	FvH4_3g01611 FvH4_3g01620 FvH4_3g16670 FvH4_6g48250
malus_domestica	MD05G1208400.v1.1 MD10G1194900.v1.1
prunus_persica	Prupe.4G149100_v2.0.a1
pyrus_communis	pycom10g16830
rosa_chinensis	RchiOBHm_Chr5g0002411 RchiOBHm_Chr5g0027771
rosa_laevigata	RLG00000015288 RLG00000031030 RLG00000033042
rosa_multiflora	Rmu_co8379139.1_g000001 Rmu_sc0000920.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051830 Rroxscaffold_1G00051840 Rroxscaffold_1G00073440
rosa_rugosa	Rorug04G0396100 Rorug05G0101000 Rorug05G0517000
rosa_samantha	Rh5AG018900 Rh5AG195300 Rh5BG193600 Rh5CG020800 Rh5CG213900 Rh5DG019900 Rh5DG195600 Rh6CG028000 Rh6DG027300
rosa_wichuraiana	Rw5G001770 Rw5G017820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	155
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	2 cut(s)	288, 301
AcoI	YGGCCR	1 cut(s)	286
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	4 cut(s)	78, 155, 247, 303
AgsI	TTSAA	3 cut(s)	20, 55, 121
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
AlwI	GGATC	2 cut(s)	288, 301
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	2 cut(s)	286, 305
Asp718I	GGTACC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	146, 158
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	2 cut(s)	146, 158
BamHI	GGATCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	275
BccI	CCATC	1 cut(s)	214
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	44
BclI	TGATCA	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	2 cut(s)	146, 158
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	146, 158
BmiI	GGNNCC	3 cut(s)	105, 277, 295
BmrFI	CCNGG	1 cut(s)	44
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	109, 279, 289
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 155, 247, 303
Bse1I	ACTGG	2 cut(s)	88, 131
Bse3DI	GCAATG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	109, 279, 289
BseLI	CCNNNNNNNGG	4 cut(s)	78, 155, 247, 303
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	88, 131
BshFI	GGCC	2 cut(s)	288, 307
BshNI	GGYRCC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	4 cut(s)	78, 155, 247, 303
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	288, 307
BsoBI	CYCGRG	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	174, 293
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	2 cut(s)	288, 307
BspCNI	CTCAG	1 cut(s)	155
BspLI	GGNNCC	3 cut(s)	105, 277, 295
BspPI	GGATC	2 cut(s)	288, 301
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	88, 131
BssECI	CCNNGG	3 cut(s)	109, 279, 289
BssMI	GATC	2 cut(s)	174, 293
BssT1I	CCWWGG	2 cut(s)	279, 289
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	142
BstKTI	GATC	2 cut(s)	177, 296
BstMBI	GATC	2 cut(s)	174, 293
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	288, 307
Cfr13I	GGNCC	2 cut(s)	146, 158
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	4 cut(s)	60, 150, 178, 333
CviJI	RGCY	6 cut(s)	14, 42, 194, 266, 288, 307
CviKI_1	RGCY	6 cut(s)	14, 42, 194, 266, 288, 307
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	2 cut(s)	176, 295
DpnII	GATC	2 cut(s)	174, 293
EaeI	YGGCCR	1 cut(s)	286
Eco130I	CCWWGG	2 cut(s)	279, 289
Eco47I	GGWCC	2 cut(s)	146, 158
Eco88I	CYCGRG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	2 cut(s)	279, 289
ErhI	CCWWGG	2 cut(s)	279, 289
FaeI	CATG	4 cut(s)	63, 153, 181, 336
FaiI	YATR	5 cut(s)	9, 61, 151, 179, 334
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	4 cut(s)	59, 149, 177, 332
FbaI	TGATCA	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	288, 307
HapII	CCGG	1 cut(s)	267
Hin1II	CATG	4 cut(s)	63, 153, 181, 336
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HpaI	GTTAAC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	267
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	3 cut(s)	162, 223, 242
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	2 cut(s)	14, 81
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	3 cut(s)	153, 321, 336
HpyF3I	CTNAG	1 cut(s)	142
Hsp92II	CATG	4 cut(s)	63, 153, 181, 336
KpnI	GGTACC	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	174
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	174, 293
LmnI	GCTCC	2 cut(s)	11, 250
LpnPI	CCDG	7 cut(s)	29, 56, 69, 85, 129, 144, 280
LweI	GCATC	1 cut(s)	58
MalI	GATC	2 cut(s)	176, 295
MboI	GATC	2 cut(s)	174, 293
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	2 cut(s)	217, 226
MnlI	CCTC	4 cut(s)	104, 205, 263, 318
MseI	TTAA	4 cut(s)	188, 216, 257, 312
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
NdeII	GATC	2 cut(s)	174, 293
NlaIII	CATG	4 cut(s)	63, 153, 181, 336
NlaIV	GGNNCC	3 cut(s)	105, 277, 295
PflMI	CCANNNNNTGG	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	3 cut(s)	105, 277, 295
PspPI	GGNCC	2 cut(s)	146, 158
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	4 cut(s)	188, 216, 257, 312
Sau3AI	GATC	2 cut(s)	174, 293
Sau96I	GGNCC	2 cut(s)	146, 158
ScrFI	CCNGG	1 cut(s)	44
SetI	ASST	4 cut(s)	16, 25, 148, 281
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	2 cut(s)	146, 158
Sse9I	AATT	2 cut(s)	217, 226
SsiI	CCGC	1 cut(s)	273
SspI	AATATT	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	2 cut(s)	279, 289
TaaI	ACNGT	1 cut(s)	262
TasI	AATT	2 cut(s)	217, 226
Tru1I	TTAA	4 cut(s)	188, 216, 257, 312
Tru9I	TTAA	4 cut(s)	188, 216, 257, 312
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	146, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.