Rh6CG028000

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004190
Physical Location & Seq
Reverse (-)
2481242 .. 2482589
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG028000.1

Sequence Viewer

Length: 609 bp
ATGGTTTTCAATGTGAAGCGTTATGGAGCTGTTGAAGGAGGAAGAACTGATAACAGCCAGGCATTTTTGAAAGCATGGAGTGAAGCATGTAAATGGGATGGAAGAGCAAAGGTTGAAATTCCGGCAGGAACATTCAAGTTGTTCCCAATTGTATTCTCAAGTCCATGCAAGGGTCGCATGGCCTCCGTAATCAAGGGAACTTTACTGGTTTCTACTAGTCCATCAGCATTGAGTTCTGAAAATTGGATAAACTTTCGGAGCATTGAACAACTGACCGTAGCCGGAGGTACGCTAGATGGCCAAGGAGCTTCGGTTTGGTCTCTTAACGATTGCAAAACTAATCCCAGATGCAAAGCTCTCCCAATTTCAATGACTTTCAACTTCGTAACAAATGCAAGTGTTCATCACTTGAGATCATTCAACAGCCAAAATGGTCATTTCAAGGTTTATGGATGCCAAGAGATGGACTTCGGAAACATTAGAATATCGGCTCCTAAGGACAGTCCAAACACCGATGGCAAAAAAATTGGAAACTCATACCGCATCAGAATTAGACGAACGATCATTGAGACCGGTGATGACTGTATAGGAATTGTGTCGGGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

202

Amino Acids

22.06

Weight (kDa)

9.45

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 30 - 202 1.8e-40 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 463
AciI CCGC 1 cut(s) 541
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 1 cut(s) 117
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 170, 463
AgeI ACCGGT 1 cut(s) 572
AhlI ACTAGT 1 cut(s) 215
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 3 cut(s) 29, 308, 356
AluI AGCT 3 cut(s) 29, 308, 356
Alw26I GTCTC 2 cut(s) 324, 563
AoxI GGCC 2 cut(s) 180, 298
ApoI RAATTY 1 cut(s) 117
AsiGI ACCGGT 1 cut(s) 572
AsuHPI GGTGA 1 cut(s) 587
AxyI CCTNAGG 1 cut(s) 495
BalI TGGCCA 1 cut(s) 300
BccI CCATC 5 cut(s) 92, 229, 290, 457, 509
BciT130I CCWGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 324, 563
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 2 cut(s) 216, 293
Bme1390I CCNGG 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 492
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 3 cut(s) 338, 443, 552
BpuEI CTTGAG 2 cut(s) 142, 430
BsaI GGTCTC 2 cut(s) 324, 563
BsaJI CCNNGG 1 cut(s) 301
BsaWI WCCGGW 1 cut(s) 572
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 463
Bse118I RCCGGY 1 cut(s) 572
Bse1I ACTGG 1 cut(s) 210
Bse21I CCTNAGG 1 cut(s) 495
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 2 cut(s) 103, 458
BseLI CCNNNNNNNGG 2 cut(s) 170, 463
BseNI ACTGG 1 cut(s) 210
BshFI GGCC 2 cut(s) 182, 300
BshTI ACCGGT 1 cut(s) 572
BsiSI CCGG 3 cut(s) 122, 282, 573
BslI CCNNNNNNNGG 2 cut(s) 170, 463
BsmAI GTCTC 2 cut(s) 324, 563
BsnI GGCC 2 cut(s) 182, 300
Bso31I GGTCTC 2 cut(s) 324, 563
Bsp143I GATC 2 cut(s) 413, 561
BspACI CCGC 1 cut(s) 541
BspANI GGCC 2 cut(s) 182, 300
BspLI GGNNCC 1 cut(s) 492
BspQI GCTCTTC 1 cut(s) 97
BspTNI GGTCTC 2 cut(s) 324, 563
BsrFI RCCGGY 1 cut(s) 572
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 572
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 2 cut(s) 413, 561
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 277, 503, 584
Bst6I CTCTTC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 495
BstF5I GGATG 2 cut(s) 103, 458
BstKTI GATC 2 cut(s) 416, 564
BstMAI GTCTC 2 cut(s) 324, 563
BstMBI GATC 2 cut(s) 413, 561
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 57
Bsu36I CCTNAGG 1 cut(s) 495
BsuRI GGCC 2 cut(s) 182, 300
BtsCI GGATG 2 cut(s) 103, 458
Cfr10I RCCGGY 1 cut(s) 572
Csp6I GTAC 1 cut(s) 288
CspAI ACCGGT 1 cut(s) 572
CviAII CATG 4 cut(s) 75, 87, 165, 178
CviJI RGCY 9 cut(s) 29, 57, 182, 281, 300, 308, 356, 426, 491
CviKI_1 RGCY 9 cut(s) 29, 57, 182, 281, 300, 308, 356, 426, 491
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 1 cut(s) 495
DpnI GATC 2 cut(s) 415, 563
DpnII GATC 2 cut(s) 413, 561
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 301
Eco31I GGTCTC 2 cut(s) 324, 563
Eco81I CCTNAGG 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 4 cut(s) 78, 90, 168, 181
FaiI YATR 8 cut(s) 24, 76, 88, 166, 179, 450, 538, 587
FatI CATG 4 cut(s) 74, 86, 164, 177
FokI GGATG 2 cut(s) 110, 465
FspBI CTAG 2 cut(s) 216, 293
HaeIII GGCC 2 cut(s) 182, 300
HapII CCGG 3 cut(s) 122, 282, 573
Hin1II CATG 4 cut(s) 78, 90, 168, 181
HpaII CCGG 3 cut(s) 122, 282, 573
HphI GGTGA 1 cut(s) 587
Hpy188I TCNGA 4 cut(s) 238, 258, 473, 548
Hpy188III TCNNGA 1 cut(s) 600
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 3 cut(s) 277, 503, 584
HpyCH4V TGCA 4 cut(s) 168, 333, 351, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 495
Hsp92II CATG 4 cut(s) 78, 90, 168, 181
Kzo9I GATC 2 cut(s) 413, 561
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 4 cut(s) 26, 258, 305, 496
LpnPI CCDG 8 cut(s) 44, 71, 111, 135, 191, 295, 358, 586
LweI GCATC 3 cut(s) 338, 443, 552
MaeI CTAG 2 cut(s) 216, 293
MaeIII GTNAC 1 cut(s) 385
MalI GATC 2 cut(s) 415, 563
MboI GATC 2 cut(s) 413, 561
MboII GAAGA 2 cut(s) 54, 114
MfeI CAATTG 1 cut(s) 147
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 7 cut(s) 117, 147, 241, 363, 525, 549, 591
MluNI TGGCCA 1 cut(s) 300
MnlI CCTC 3 cut(s) 32, 193, 278
Mox20I TGGCCA 1 cut(s) 300
MscI TGGCCA 1 cut(s) 300
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 91
Msp20I TGGCCA 1 cut(s) 300
MspI CCGG 3 cut(s) 122, 282, 573
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeII GATC 2 cut(s) 413, 561
NlaIII CATG 4 cut(s) 78, 90, 168, 181
NlaIV GGNNCC 1 cut(s) 492
NspI RCATGY 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 97
PflMI CCANNNNNTGG 1 cut(s) 463
PinAI ACCGGT 1 cut(s) 572
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 492
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 324
Sau3AI GATC 2 cut(s) 413, 561
ScrFI CCNGG 1 cut(s) 59
SetI ASST 6 cut(s) 31, 114, 289, 310, 358, 447
SfaNI GCATC 3 cut(s) 338, 443, 552
SmiMI CAYNNNNRTG 1 cut(s) 91
SmlI CTYRAG 2 cut(s) 157, 409
SmoI CTYRAG 2 cut(s) 157, 409
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 7 cut(s) 117, 147, 241, 363, 525, 549, 591
SsiI CCGC 1 cut(s) 541
SspMI CTAG 2 cut(s) 216, 293
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 3 cut(s) 277, 503, 584
TasI AATT 7 cut(s) 117, 147, 241, 363, 525, 549, 591
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 392
TspGWI ACGGA 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 463
XapI RAATTY 1 cut(s) 117
XceI RCATGY 1 cut(s) 90
XspI CTAG 2 cut(s) 216, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.