Exopolygalacturonase-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G78400 |
| fragaria_vesca | FvH4_3g01611 FvH4_3g01620 FvH4_3g16670 FvH4_6g48250 |
| malus_domestica | MD05G1208400.v1.1 MD10G1194900.v1.1 |
| prunus_persica | Prupe.4G149100_v2.0.a1 |
| pyrus_communis | pycom10g16830 |
| rosa_chinensis | RchiOBHm_Chr5g0002411 RchiOBHm_Chr5g0027771 |
| rosa_laevigata | RLG00000015288 RLG00000031030 RLG00000033042 |
| rosa_multiflora | Rmu_co8379139.1_g000001 Rmu_sc0000920.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00051830 Rroxscaffold_1G00051840 Rroxscaffold_1G00073440 |
| rosa_rugosa | Rorug04G0396100 Rorug05G0101000 Rorug05G0517000 |
| rosa_samantha | Rh5AG018900 Rh5AG195300 Rh5BG193600 Rh5CG020800 Rh5CG213900 Rh5DG019900 Rh5DG195600 Rh6CG028000 Rh6DG027300 |
| rosa_wichuraiana | Rw5G001770 Rw5G017820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 788 |
| Acc36I | ACCTGC | 1 cut(s) | 1079 |
| Acc65I | GGTACC | 1 cut(s) | 380 |
| AccB1I | GGYRCC | 1 cut(s) | 380 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 260, 556 |
| AccII | CGCG | 1 cut(s) | 683 |
| AciI | CCGC | 2 cut(s) | 378, 729 |
| AclWI | GGATC | 1 cut(s) | 851 |
| AcoI | YGGCCR | 1 cut(s) | 391 |
| AcsI | RAATTY | 2 cut(s) | 537, 883 |
| AfaI | GTAC | 5 cut(s) | 289, 350, 382, 1010, 1089 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 260, 408, 445, 556, 740, 822 |
| AgsI | TTSAA | 4 cut(s) | 226, 462, 535, 882 |
| AjiI | CACGTC | 1 cut(s) | 103 |
| AjnI | CCWGG | 2 cut(s) | 147, 444 |
| AluBI | AGCT | 2 cut(s) | 584, 627 |
| AluI | AGCT | 2 cut(s) | 584, 627 |
| Alw21I | GWGCWC | 2 cut(s) | 328, 693 |
| Alw44I | GTGCAC | 1 cut(s) | 689 |
| AlwI | GGATC | 1 cut(s) | 851 |
| Ama87I | CYCGRG | 1 cut(s) | 734 |
| AoxI | GGCC | 1 cut(s) | 391 |
| ApaLI | GTGCAC | 1 cut(s) | 689 |
| ApeKI | GCWGC | 1 cut(s) | 1062 |
| ApoI | RAATTY | 2 cut(s) | 537, 883 |
| Asp718I | GGTACC | 1 cut(s) | 380 |
| AspA2I | CCTAGG | 1 cut(s) | 760 |
| AspS9I | GGNCC | 3 cut(s) | 251, 263, 731 |
| AsuC2I | CCSGG | 3 cut(s) | 213, 735, 736 |
| AsuHPI | GGTGA | 1 cut(s) | 680 |
| AsuII | TTCGAA | 1 cut(s) | 983 |
| AvaI | CYCGRG | 1 cut(s) | 734 |
| AvaII | GGWCC | 3 cut(s) | 251, 263, 731 |
| AvrII | CCTAGG | 1 cut(s) | 760 |
| BaeGI | GKGCMC | 1 cut(s) | 693 |
| BanI | GGYRCC | 1 cut(s) | 380 |
| BbsI | GAAGAC | 2 cut(s) | 31, 786 |
| Bbv12I | GWGCWC | 2 cut(s) | 328, 693 |
| BbvI | GCAGC | 1 cut(s) | 1074 |
| BccI | CCATC | 6 cut(s) | 122, 319, 602, 679, 941, 1198 |
| BceAI | ACGGC | 3 cut(s) | 210, 406, 1031 |
| BciT130I | CCWGG | 2 cut(s) | 149, 446 |
| BciVI | GTATCC | 1 cut(s) | 243 |
| BclI | TGATCA | 1 cut(s) | 82 |
| BcnI | CCSGG | 3 cut(s) | 213, 735, 736 |
| BfaI | CTAG | 2 cut(s) | 29, 761 |
| BfuAI | ACCTGC | 1 cut(s) | 1079 |
| BfuI | GTATCC | 1 cut(s) | 243 |
| BisI | GCNGC | 1 cut(s) | 1063 |
| BlnI | CCTAGG | 1 cut(s) | 760 |
| BlsI | GCNGC | 1 cut(s) | 1064 |
| Bme1390I | CCNGG | 5 cut(s) | 149, 213, 446, 735, 736 |
| Bme18I | GGWCC | 3 cut(s) | 251, 263, 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 734 |
| BmgBI | CACGTC | 1 cut(s) | 103 |
| BmgT120I | GGNCC | 3 cut(s) | 251, 263, 731 |
| BmiI | GGNNCC | 5 cut(s) | 210, 382, 400, 733, 1165 |
| BmrFI | CCNGG | 5 cut(s) | 149, 213, 446, 735, 736 |
| BmsI | GCATC | 7 cut(s) | 151, 421, 536, 759, 1049, 1110, 1121 |
| BpiI | GAAGAC | 2 cut(s) | 31, 786 |
| Bpu14I | TTCGAA | 1 cut(s) | 983 |
| BpuMI | CCSGG | 3 cut(s) | 213, 735, 736 |
| Bsa29I | ATCGAT | 2 cut(s) | 354, 936 |
| BsaAI | YACGTR | 1 cut(s) | 1008 |
| BsaJI | CCNNGG | 6 cut(s) | 384, 394, 402, 663, 734, 760 |
| BsaWI | WCCGGW | 2 cut(s) | 345, 371 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 786, 816 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 260, 408, 445, 556, 740, 822 |
| Bse1I | ACTGG | 2 cut(s) | 236, 870 |
| Bse3DI | GCAATG | 1 cut(s) | 265 |
| BseBI | CCWGG | 2 cut(s) | 149, 446 |
| BseCI | ATCGAT | 2 cut(s) | 354, 936 |
| BseDI | CCNNGG | 6 cut(s) | 384, 394, 402, 663, 734, 760 |
| BseGI | GGATG | 4 cut(s) | 166, 551, 916, 1136 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 260, 408, 445, 556, 740, 822 |
| BseMI | GCAATG | 1 cut(s) | 265 |
| BseMII | CTCAG | 2 cut(s) | 261, 594 |
| BseNI | ACTGG | 2 cut(s) | 236, 870 |
| BseRI | GAGGAG | 1 cut(s) | 1156 |
| BseSI | GKGCMC | 1 cut(s) | 693 |
| BseXI | GCAGC | 1 cut(s) | 1074 |
| BsgI | GTGCAG | 1 cut(s) | 796 |
| Bsh1236I | CGCG | 1 cut(s) | 683 |
| Bsh1285I | CGRYCG | 1 cut(s) | 660 |
| BshFI | GGCC | 1 cut(s) | 393 |
| BshNI | GGYRCC | 1 cut(s) | 380 |
| BshVI | ATCGAT | 2 cut(s) | 354, 936 |
| BsiEI | CGRYCG | 1 cut(s) | 660 |
| BsiHKAI | GWGCWC | 2 cut(s) | 328, 693 |
| BsiHKCI | CYCGRG | 1 cut(s) | 734 |
| BsiSI | CCGG | 5 cut(s) | 213, 346, 372, 587, 735 |
| BslFI | GGGAC | 3 cut(s) | 717, 838, 1096 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 260, 408, 445, 556, 740, 822 |
| BsmFI | GGGAC | 3 cut(s) | 717, 838, 1096 |
| BsnI | GGCC | 1 cut(s) | 393 |
| BsoBI | CYCGRG | 1 cut(s) | 734 |
| Bsp119I | TTCGAA | 1 cut(s) | 983 |
| Bsp1286I | GDGCHC | 2 cut(s) | 328, 693 |
| Bsp143I | GATC | 7 cut(s) | 15, 82, 355, 506, 657, 843, 937 |
| Bsp68I | TCGCGA | 1 cut(s) | 683 |
| BspACI | CCGC | 2 cut(s) | 378, 729 |
| BspANI | GGCC | 1 cut(s) | 393 |
| BspCNI | CTCAG | 2 cut(s) | 260, 593 |
| BspDI | ATCGAT | 2 cut(s) | 354, 936 |
| BspFNI | CGCG | 1 cut(s) | 683 |
| BspLI | GGNNCC | 5 cut(s) | 210, 382, 400, 733, 1165 |
| BspMI | ACCTGC | 1 cut(s) | 1079 |
| BspPI | GGATC | 1 cut(s) | 851 |
| BspQI | GCTCTTC | 1 cut(s) | 456 |
| BspT104I | TTCGAA | 1 cut(s) | 983 |
| BspT107I | GGYRCC | 1 cut(s) | 380 |
| BsrDI | GCAATG | 1 cut(s) | 265 |
| BsrI | ACTGG | 2 cut(s) | 236, 870 |
| BssECI | CCNNGG | 6 cut(s) | 384, 394, 402, 663, 734, 760 |
| BssMI | GATC | 7 cut(s) | 15, 82, 355, 506, 657, 843, 937 |
| BssT1I | CCWWGG | 3 cut(s) | 384, 394, 760 |
| Bst2UI | CCWGG | 2 cut(s) | 149, 446 |
| Bst4CI | ACNGT | 5 cut(s) | 332, 367, 596, 677, 802 |
| Bst6I | CTCTTC | 1 cut(s) | 456 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1071 |
| BstBAI | YACGTR | 1 cut(s) | 1008 |
| BstBI | TTCGAA | 1 cut(s) | 983 |
| BstC8I | GCNNGC | 2 cut(s) | 649, 1136 |
| BstDEI | CTNAG | 2 cut(s) | 247, 580 |
| BstDSI | CCRYGG | 1 cut(s) | 663 |
| BstF5I | GGATG | 4 cut(s) | 166, 551, 916, 1136 |
| BstFNI | CGCG | 1 cut(s) | 683 |
| BstKTI | GATC | 7 cut(s) | 18, 85, 358, 509, 660, 846, 940 |
| BstMBI | GATC | 7 cut(s) | 15, 82, 355, 506, 657, 843, 937 |
| BstMCI | CGRYCG | 1 cut(s) | 660 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 756, 1071, 1182 |
| BstNI | CCWGG | 2 cut(s) | 149, 446 |
| BstNSI | RCATGY | 1 cut(s) | 180 |
| BstSCI | CCNGG | 5 cut(s) | 147, 211, 444, 733, 734 |
| BstSLI | GKGCMC | 1 cut(s) | 693 |
| BstSNI | TACGTA | 1 cut(s) | 1008 |
| BstUI | CGCG | 1 cut(s) | 683 |
| BstV1I | GCAGC | 1 cut(s) | 1074 |
| BstV2I | GAAGAC | 2 cut(s) | 31, 786 |
| Bsu15I | ATCGAT | 2 cut(s) | 354, 936 |
| BsuI | GTATCC | 1 cut(s) | 243 |
| BsuRI | GGCC | 1 cut(s) | 393 |
| BsuTUI | ATCGAT | 2 cut(s) | 354, 936 |
| BtgI | CCRYGG | 1 cut(s) | 663 |
| BtgZI | GCGATG | 1 cut(s) | 698 |
| BtrI | CACGTC | 1 cut(s) | 103 |
| BtsCI | GGATG | 4 cut(s) | 166, 551, 916, 1136 |
| BtsIMutI | CAGTG | 2 cut(s) | 243, 372 |
| BtuMI | TCGCGA | 1 cut(s) | 683 |
| BveI | ACCTGC | 1 cut(s) | 1079 |
| Cac8I | GCNNGC | 2 cut(s) | 649, 1136 |
| Cfr13I | GGNCC | 3 cut(s) | 251, 263, 731 |
| Cfr9I | CCCGGG | 1 cut(s) | 734 |
| ClaI | ATCGAT | 2 cut(s) | 354, 936 |
| Csp6I | GTAC | 5 cut(s) | 288, 349, 381, 1009, 1088 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 186, 221 |
| CviAII | CATG | 6 cut(s) | 165, 177, 255, 740, 907, 1077 |
| CviQI | GTAC | 5 cut(s) | 288, 349, 381, 1009, 1088 |
| DdeI | CTNAG | 2 cut(s) | 247, 580 |
| DpnI | GATC | 7 cut(s) | 17, 84, 357, 508, 659, 845, 939 |
| DpnII | GATC | 7 cut(s) | 15, 82, 355, 506, 657, 843, 937 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 788 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 788 |
| EaeI | YGGCCR | 1 cut(s) | 391 |
| Eam1104I | CTCTTC | 1 cut(s) | 456 |
| EarI | CTCTTC | 1 cut(s) | 456 |
| Eco105I | TACGTA | 1 cut(s) | 1008 |
| Eco130I | CCWWGG | 3 cut(s) | 384, 394, 760 |
| Eco47I | GGWCC | 3 cut(s) | 251, 263, 731 |
| Eco88I | CYCGRG | 1 cut(s) | 734 |
| EcoRII | CCWGG | 2 cut(s) | 147, 444 |
| EcoT14I | CCWWGG | 3 cut(s) | 384, 394, 760 |
| EcoT22I | ATGCAT | 1 cut(s) | 166 |
| ErhI | CCWWGG | 3 cut(s) | 384, 394, 760 |
| FaeI | CATG | 6 cut(s) | 168, 180, 258, 743, 910, 1080 |
| FaqI | GGGAC | 3 cut(s) | 717, 838, 1096 |
| FatI | CATG | 6 cut(s) | 164, 176, 254, 739, 906, 1076 |
| FbaI | TGATCA | 1 cut(s) | 82 |
| Fnu4HI | GCNGC | 1 cut(s) | 1063 |
| FokI | GGATG | 4 cut(s) | 173, 558, 923, 1143 |
| Fsp4HI | GCNGC | 1 cut(s) | 1063 |
| FspBI | CTAG | 2 cut(s) | 29, 761 |
| GluI | GCNGC | 1 cut(s) | 1063 |
| HaeIII | GGCC | 1 cut(s) | 393 |
| HapII | CCGG | 5 cut(s) | 213, 346, 372, 587, 735 |
| Hin1II | CATG | 6 cut(s) | 168, 180, 258, 743, 910, 1080 |
| HinfI | GANTC | 5 cut(s) | 492, 636, 642, 744, 922 |
| HpaII | CCGG | 5 cut(s) | 213, 346, 372, 587, 735 |
| HphI | GGTGA | 1 cut(s) | 680 |
| Hpy166II | GTNNAC | 1 cut(s) | 691 |
| Hpy188III | TCNNGA | 4 cut(s) | 80, 158, 682, 941 |
| Hpy8I | GTNNAC | 1 cut(s) | 691 |
| Hpy99I | CGWCG | 4 cut(s) | 104, 1004, 1036, 1039 |
| HpyAV | CCTTC | 2 cut(s) | 68, 1153 |
| HpyCH4III | ACNGT | 5 cut(s) | 332, 367, 596, 677, 802 |
| HpyCH4IV | ACGT | 5 cut(s) | 102, 915, 1002, 1007, 1086 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 756, 1071, 1182 |
| HpyF3I | CTNAG | 2 cut(s) | 247, 580 |
| HpySE526I | ACGT | 5 cut(s) | 102, 915, 1002, 1007, 1086 |
| Hsp92II | CATG | 6 cut(s) | 168, 180, 258, 743, 910, 1080 |
| KpnI | GGTACC | 1 cut(s) | 384 |
| Ksp22I | TGATCA | 1 cut(s) | 82 |
| Kzo9I | GATC | 7 cut(s) | 15, 82, 355, 506, 657, 843, 937 |
| LguI | GCTCTTC | 1 cut(s) | 456 |
| LmnI | GCTCC | 3 cut(s) | 398, 589, 1169 |
| Lsp1109I | GCAGC | 1 cut(s) | 1074 |
| LweI | GCATC | 7 cut(s) | 151, 421, 536, 759, 1049, 1110, 1121 |
| MaeI | CTAG | 2 cut(s) | 29, 761 |
| MaeII | ACGT | 5 cut(s) | 102, 915, 1002, 1007, 1086 |
| MaeIII | GTNAC | 3 cut(s) | 367, 796, 1003 |
| MalI | GATC | 7 cut(s) | 17, 84, 357, 508, 659, 845, 939 |
| MboI | GATC | 7 cut(s) | 15, 82, 355, 506, 657, 843, 937 |
| MboII | GAAGA | 5 cut(s) | 31, 43, 443, 791, 972 |
| MfeI | CAATTG | 1 cut(s) | 359 |
| MhlI | GDGCHC | 2 cut(s) | 328, 693 |
| MluCI | AATT | 3 cut(s) | 359, 537, 883 |
| MlyI | GAGTC | 1 cut(s) | 501 |
| MmeI | TCCRAC | 3 cut(s) | 314, 772, 1017 |
| Mph1103I | ATGCAT | 1 cut(s) | 166 |
| MseI | TTAA | 3 cut(s) | 282, 417, 615 |
| MslI | CAYNNNNRTG | 3 cut(s) | 181, 905, 1106 |
| MspI | CCGG | 5 cut(s) | 213, 346, 372, 587, 735 |
| MspR9I | CCNGG | 5 cut(s) | 149, 213, 446, 735, 736 |
| MunI | CAATTG | 1 cut(s) | 359 |
| MvaI | CCWGG | 2 cut(s) | 149, 446 |
| MvnI | CGCG | 1 cut(s) | 683 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 756, 1071, 1182 |
| NciI | CCSGG | 3 cut(s) | 213, 735, 736 |
| NdeII | GATC | 7 cut(s) | 15, 82, 355, 506, 657, 843, 937 |
| NlaIII | CATG | 6 cut(s) | 168, 180, 258, 743, 910, 1080 |
| NlaIV | GGNNCC | 5 cut(s) | 210, 382, 400, 733, 1165 |
| NmeAIII | GCCGAG | 1 cut(s) | 383 |
| NmuCI | GTSAC | 2 cut(s) | 367, 796 |
| NruI | TCGCGA | 1 cut(s) | 683 |
| NsiI | ATGCAT | 1 cut(s) | 166 |
| NspI | RCATGY | 1 cut(s) | 180 |
| NspV | TTCGAA | 1 cut(s) | 983 |
| PciSI | GCTCTTC | 1 cut(s) | 456 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 492 |
| PfeI | GAWTC | 4 cut(s) | 636, 642, 744, 922 |
| PflFI | GACNNNGTC | 1 cut(s) | 677 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 260, 556 |
| PfoI | TCCNGGA | 1 cut(s) | 211 |
| PkrI | GCNGC | 1 cut(s) | 1064 |
| Ple19I | CGATCG | 1 cut(s) | 660 |
| PleI | GAGTC | 1 cut(s) | 500 |
| PpsI | GAGTC | 1 cut(s) | 500 |
| Ppu21I | YACGTR | 1 cut(s) | 1008 |
| Psp6I | CCWGG | 2 cut(s) | 147, 444 |
| PspGI | CCWGG | 2 cut(s) | 147, 444 |
| PspN4I | GGNNCC | 5 cut(s) | 210, 382, 400, 733, 1165 |
| PspPI | GGNCC | 3 cut(s) | 251, 263, 731 |
| PsyI | GACNNNGTC | 1 cut(s) | 677 |
| PvuI | CGATCG | 1 cut(s) | 660 |
| RruI | TCGCGA | 1 cut(s) | 683 |
| RsaI | GTAC | 5 cut(s) | 289, 350, 382, 1010, 1089 |
| RsaNI | GTAC | 5 cut(s) | 288, 349, 381, 1009, 1088 |
| RseI | CAYNNNNRTG | 3 cut(s) | 181, 905, 1106 |
| SapI | GCTCTTC | 1 cut(s) | 456 |
| SaqAI | TTAA | 3 cut(s) | 282, 417, 615 |
| SatI | GCNGC | 1 cut(s) | 1063 |
| Sau3AI | GATC | 7 cut(s) | 15, 82, 355, 506, 657, 843, 937 |
| Sau96I | GGNCC | 3 cut(s) | 251, 263, 731 |
| SchI | GAGTC | 1 cut(s) | 501 |
| ScrFI | CCNGG | 5 cut(s) | 149, 213, 446, 735, 736 |
| SduI | GDGCHC | 2 cut(s) | 328, 693 |
| SfaNI | GCATC | 7 cut(s) | 151, 421, 536, 759, 1049, 1110, 1121 |
| SfuI | TTCGAA | 1 cut(s) | 983 |
| SinI | GGWCC | 3 cut(s) | 251, 263, 731 |
| SmaI | CCCGGG | 1 cut(s) | 736 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 181, 905, 1106 |
| SnaBI | TACGTA | 1 cut(s) | 1008 |
| Sse9I | AATT | 3 cut(s) | 359, 537, 883 |
| SsiI | CCGC | 2 cut(s) | 378, 729 |
| SspI | AATATT | 1 cut(s) | 947 |
| SspMI | CTAG | 2 cut(s) | 29, 761 |
| StyD4I | CCNGG | 5 cut(s) | 147, 211, 444, 733, 734 |
| StyI | CCWWGG | 3 cut(s) | 384, 394, 760 |
| TaaI | ACNGT | 5 cut(s) | 332, 367, 596, 677, 802 |
| TaiI | ACGT | 5 cut(s) | 105, 918, 1005, 1010, 1089 |
| TaqI | TCGA | 6 cut(s) | 14, 99, 354, 495, 936, 983 |
| TasI | AATT | 3 cut(s) | 359, 537, 883 |
| TfiI | GAWTC | 4 cut(s) | 636, 642, 744, 922 |
| Tru1I | TTAA | 3 cut(s) | 282, 417, 615 |
| Tru9I | TTAA | 3 cut(s) | 282, 417, 615 |
| TscAI | CASTG | 2 cut(s) | 243, 372 |
| TseFI | GTSAC | 2 cut(s) | 367, 796 |
| TseI | GCWGC | 1 cut(s) | 1062 |
| Tsp45I | GTSAC | 2 cut(s) | 367, 796 |
| TspDTI | ATGAA | 2 cut(s) | 466, 895 |
| TspGWI | ACGGA | 2 cut(s) | 708, 842 |
| TspMI | CCCGGG | 1 cut(s) | 734 |
| TspRI | CASTG | 2 cut(s) | 243, 372 |
| Tth111I | GACNNNGTC | 1 cut(s) | 677 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 260, 556 |
| VneI | GTGCAC | 1 cut(s) | 689 |
| VpaK11BI | GGWCC | 3 cut(s) | 251, 263, 731 |
| XapI | RAATTY | 2 cut(s) | 537, 883 |
| XceI | RCATGY | 1 cut(s) | 180 |
| XmaI | CCCGGG | 1 cut(s) | 734 |
| XmaJI | CCTAGG | 1 cut(s) | 760 |
| XspI | CTAG | 2 cut(s) | 29, 761 |
| Zsp2I | ATGCAT | 1 cut(s) | 166 |