Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004190

Physical Location & Seq

Genomic Coordinates Forward (+)

70154291 .. 70154923

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0517000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCTGCAGCCGAGTTCACCACCCTCCAACATTTTCATCGTTTGGTTGAAAATGGGCACTTCCCAGTTGACTTGTTAGAAAAGAGCAATGAACGTGTGGACTACGTCCCAGGGGTATCTTCAACACGATTTGGGGATCTGATGATGAATGGAAGTAATCCACATGTTCTAGGCCGTGTCCGGAAGAACTTCTCTTGGGTGCCCAAAGCACATTATCTCTTAATCACTTCCATCTATGAGCTTGAAACCCGAGTCATTGATGTTTTAAGATCGGAACTCTTGTTGAAGCAGAGACTATGCAAACACAAGAACACAGAAGTATTTGGGAGTTTGAAGCTTATTCATTCAATAATCAAAATATCAAATGTTGGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

125

Amino Acids

14.33

Weight (kDa)

9.41

Isoelectric Point (pI)

25.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78400
fragaria_vesca	FvH4_3g01611 FvH4_3g01620 FvH4_3g16670 FvH4_6g48250
malus_domestica	MD05G1208400.v1.1 MD10G1194900.v1.1
prunus_persica	Prupe.4G149100_v2.0.a1
pyrus_communis	pycom10g16830
rosa_chinensis	RchiOBHm_Chr5g0002411 RchiOBHm_Chr5g0027771
rosa_laevigata	RLG00000015288 RLG00000031030 RLG00000033042
rosa_multiflora	Rmu_co8379139.1_g000001 Rmu_sc0000920.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051830 Rroxscaffold_1G00051840 Rroxscaffold_1G00073440
rosa_rugosa	Rorug04G0396100 Rorug05G0101000 Rorug05G0517000
rosa_samantha	Rh5AG018900 Rh5AG195300 Rh5BG193600 Rh5CG020800 Rh5CG213900 Rh5DG019900 Rh5DG195600 Rh6CG028000 Rh6DG027300
rosa_wichuraiana	Rw5G001770 Rw5G017820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	180
AclWI	GGATC	1 cut(s)	144
AflIII	ACRYGT	2 cut(s)	94, 163
AgsI	TTSAA	6 cut(s)	50, 123, 245, 286, 334, 348
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	2 cut(s)	241, 337
AluI	AGCT	2 cut(s)	241, 337
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	249
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	249
BaeGI	GKGCMC	2 cut(s)	60, 204
BanI	GGYRCC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	59
BmuI	ACTGGG	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	109, 110
BsaWI	WCCGGW	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	94
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	109, 110
BseMI	GCAATG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	65
BseSI	GKGCMC	2 cut(s)	60, 204
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	60, 204
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	136, 269
BspANI	GGCC	1 cut(s)	174
BspEI	TCCGGA	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	201
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	109, 110
BssMI	GATC	2 cut(s)	136, 269
Bst2UI	CCWGG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	139, 272
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	2 cut(s)	136, 269
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	2 cut(s)	60, 204
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	174
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	5 cut(s)	11, 174, 241, 337, 372
CviKI_1	RGCY	5 cut(s)	11, 174, 241, 337, 372
DpnI	GATC	2 cut(s)	138, 271
DpnII	GATC	2 cut(s)	136, 269
Eco88I	CYCGRG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	109
FaeI	CATG	1 cut(s)	167
FaiI	YATR	4 cut(s)	165, 237, 298, 376
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	3 cut(s)	18, 70, 100
Hpy188I	TCNGA	2 cut(s)	141, 274
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	3 cut(s)	18, 70, 100
HpyCH4IV	ACGT	2 cut(s)	94, 105
HpyCH4V	TGCA	2 cut(s)	8, 300
HpySE526I	ACGT	2 cut(s)	94, 105
Hsp92II	CATG	1 cut(s)	167
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	136, 269
LpnPI	CCDG	4 cut(s)	78, 96, 123, 194
Lsp1109I	GCAGC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	2 cut(s)	94, 105
MalI	GATC	2 cut(s)	138, 271
MboI	GATC	2 cut(s)	136, 269
MboII	GAAGA	2 cut(s)	111, 196
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	2 cut(s)	60, 204
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	1 cut(s)	35
MroI	TCCGGA	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	2 cut(s)	221, 266
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
NdeII	GATC	2 cut(s)	136, 269
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	201
NmeAIII	GCCGAG	1 cut(s)	37
NspI	RCATGY	1 cut(s)	167
PasI	CCCWGGG	1 cut(s)	110
PciI	ACATGT	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PscI	ACATGT	1 cut(s)	163
PsiI	TTATAA	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	136
PsyI	GACNNNGTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	221, 266
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	136, 269
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	2 cut(s)	60, 204
SetI	ASST	4 cut(s)	97, 108, 243, 339
SfcI	CTRYAG	1 cut(s)	6
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	109
TaiI	ACGT	2 cut(s)	97, 108
Tru1I	TTAA	2 cut(s)	221, 266
Tru9I	TTAA	2 cut(s)	221, 266
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	4 cut(s)	26, 105, 161, 332
Tth111I	GACNNNGTC	1 cut(s)	104
XceI	RCATGY	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.