Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004190

Physical Location & Seq

Genomic Coordinates Reverse (-)

72610027 .. 72610638

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGTTTGGTATCTTCATTCCTAGGGTTTAGGGTTTTCTTGTGTTTGTGCTTGTTGGTATGGGTAACAAAAGGCCAAAATGTCAACCTCTTTCGTCAAACCGAACAACTTGGTCGGCGCAAGATTTTCAATGTGATGGATTATGGAGCTGTTGAAGGTGGAATAACTGATAACAGCCAGGCATTTTTGAAAGCATGGAATGATGCCTGTAAATGGACTGGAAGGGCAAGGGTTTTGGTTCCCGGAGGAATATTCAAGTTATTCCCAGTTGTATTCTCAGTTAACCGTAGCCGGAGGCGGTACCTTGGGACGGCCAAGGATCCTTTGTTTGGCCTCTTAACAACTGCAACAATCGTCCATGCAAGACACTCCCCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

126

Amino Acids

14.15

Weight (kDa)

10.67

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78400
fragaria_vesca	FvH4_3g01611 FvH4_3g01620 FvH4_3g16670 FvH4_6g48250
malus_domestica	MD05G1208400.v1.1 MD10G1194900.v1.1
prunus_persica	Prupe.4G149100_v2.0.a1
pyrus_communis	pycom10g16830
rosa_chinensis	RchiOBHm_Chr5g0002411 RchiOBHm_Chr5g0027771
rosa_laevigata	RLG00000015288 RLG00000031030 RLG00000033042
rosa_multiflora	Rmu_co8379139.1_g000001 Rmu_sc0000920.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051830 Rroxscaffold_1G00051840 Rroxscaffold_1G00073440
rosa_rugosa	Rorug04G0396100 Rorug05G0101000 Rorug05G0517000
rosa_samantha	Rh5AG018900 Rh5AG195300 Rh5BG193600 Rh5CG020800 Rh5CG213900 Rh5DG019900 Rh5DG195600 Rh6CG028000 Rh6DG027300
rosa_wichuraiana	Rw5G001770 Rw5G017820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	300
AciI	CCGC	1 cut(s)	298
AclWI	GGATC	2 cut(s)	314, 327
AcoI	YGGCCR	1 cut(s)	312
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	213, 310, 329
AgsI	TTSAA	4 cut(s)	130, 155, 190, 256
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
AlwI	GGATC	2 cut(s)	314, 327
AoxI	GGCC	3 cut(s)	73, 312, 331
Asp718I	GGTACC	1 cut(s)	300
AspA2I	CCTAGG	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	243
AvrII	CCTAGG	1 cut(s)	22
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	300
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	327
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	243
BfaI	CTAG	1 cut(s)	23
BlnI	CCTAGG	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	179, 243
BmiI	GGNNCC	3 cut(s)	240, 302, 321
BmrFI	CCNGG	2 cut(s)	179, 243
BmrI	ACTGGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	22, 304, 315
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 310, 329
Bse1I	ACTGG	2 cut(s)	223, 266
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	3 cut(s)	22, 304, 315
BseLI	CCNNNNNNNGG	3 cut(s)	213, 310, 329
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	223, 266
BshFI	GGCC	3 cut(s)	75, 314, 333
BshNI	GGYRCC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	243, 292
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	213, 310, 329
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	3 cut(s)	75, 314, 333
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	3 cut(s)	75, 314, 333
BspCNI	CTCAG	1 cut(s)	290
BspLI	GGNNCC	3 cut(s)	240, 302, 321
BspPI	GGATC	2 cut(s)	314, 327
BspT107I	GGYRCC	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	223, 266
BssECI	CCNNGG	3 cut(s)	22, 304, 315
BssMI	GATC	1 cut(s)	319
BssT1I	CCWWGG	3 cut(s)	22, 304, 315
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	177, 241
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	3 cut(s)	75, 314, 333
CfoI	GCGC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	2 cut(s)	195, 359
CviJI	RGCY	6 cut(s)	75, 149, 177, 291, 314, 333
CviKI_1	RGCY	6 cut(s)	75, 149, 177, 291, 314, 333
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	312
Eco130I	CCWWGG	3 cut(s)	22, 304, 315
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	3 cut(s)	22, 304, 315
ErhI	CCWWGG	3 cut(s)	22, 304, 315
FaeI	CATG	2 cut(s)	198, 362
FaiI	YATR	4 cut(s)	61, 144, 196, 360
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	2 cut(s)	194, 358
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	119
HaeIII	GGCC	3 cut(s)	75, 314, 333
HapII	CCGG	2 cut(s)	243, 292
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	198, 362
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	2 cut(s)	85, 283
HindII	GTYRAC	2 cut(s)	85, 283
HpaI	GTTAAC	1 cut(s)	283
HpaII	CCGG	2 cut(s)	243, 292
Hpy166II	GTNNAC	2 cut(s)	85, 283
Hpy8I	GTNNAC	2 cut(s)	85, 283
HpyAV	CCTTC	2 cut(s)	149, 216
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	347, 362
HpyF3I	CTNAG	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	198, 362
HspAI	GCGC	1 cut(s)	118
KpnI	GGTACC	1 cut(s)	304
KspAI	GTTAAC	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	7 cut(s)	164, 191, 204, 220, 256, 279, 305
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	1 cut(s)	6
MflI	RGATCY	1 cut(s)	319
MnlI	CCTC	4 cut(s)	98, 239, 288, 344
MseI	TTAA	2 cut(s)	282, 338
MspI	CCGG	2 cut(s)	243, 292
MspR9I	CCNGG	2 cut(s)	179, 243
MvaI	CCWGG	1 cut(s)	179
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	2 cut(s)	198, 362
NlaIV	GGNNCC	3 cut(s)	240, 302, 321
PfoI	TCCNGGA	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	240, 302, 321
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	282, 338
Sau3AI	GATC	1 cut(s)	319
ScrFI	CCNGG	2 cut(s)	179, 243
SetI	ASST	4 cut(s)	90, 151, 160, 306
SfaNI	GCATC	1 cut(s)	193
SsiI	CCGC	1 cut(s)	298
SspI	AATATT	1 cut(s)	252
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	177, 241
StyI	CCWWGG	3 cut(s)	22, 304, 315
TaaI	ACNGT	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	282, 338
Tru9I	TTAA	2 cut(s)	282, 338
TspDTI	ATGAA	1 cut(s)	6
XmaJI	CCTAGG	1 cut(s)	22
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.