Belongs to the HisA HisF family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G26900 |
| fragaria_vesca | FvH4_5g29730 FvH4_5g29730 FvH4_5g29730 |
| malus_domestica | MD03G1198000.v1.1 MD11G1214000.v1.1 |
| prunus_persica | Prupe.4G217200_v2.0.a1 |
| pyrus_communis | pycom03g14950 |
| rosa_chinensis | RchiOBHm_Chr4g0412471 RchiOBHm_Chr5g0040621 RchiOBHm_Chr5g0040671 |
| rosa_laevigata | RLG00000008296 RLG00000033991 RLG00000033993 |
| rosa_multiflora | Rmu_co8258425.1_g000001 Rmu_sc0000057.1_g000007 Rmu_sc0002604.1_g000021 Rmu_sc0003916.1_g000009 |
| rosa_roxburghii | Rroxscaffold_161G00448020 Rroxscaffold_1G00040000 Rroxscaffold_5G00356630 |
| rosa_rugosa | Rorug04G0104000.1 Rorug05G0186200 Rorug05G0186300 |
| rosa_samantha | Rh1DG043400 Rh4AG173300 Rh4BG172600 Rh4CG184200 Rh4DG168700 Rh5AG272700 Rh5BG277100 Rh5BG277700 Rh5CG309600 Rh5DG285600 |
| rosa_wichuraiana | Rw0G015610 Rw1G002220 Rw5G025570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 7, 170 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 503 |
| AccII | CGCG | 1 cut(s) | 1002 |
| AciI | CCGC | 7 cut(s) | 11, 265, 299, 965, 1000, 1413, 1658 |
| AclWI | GGATC | 1 cut(s) | 1295 |
| AcoI | YGGCCR | 2 cut(s) | 300, 1417 |
| AcsI | RAATTY | 1 cut(s) | 1385 |
| AcuI | CTGAAG | 3 cut(s) | 354, 377, 1128 |
| AcyI | GRCGYC | 1 cut(s) | 8 |
| AfaI | GTAC | 4 cut(s) | 1038, 1068, 1316, 1405 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 284, 374, 434, 503, 783, 1657, 1675 |
| AgeI | ACCGGT | 1 cut(s) | 992 |
| AgsI | TTSAA | 6 cut(s) | 236, 407, 692, 729, 796, 1345 |
| AjnI | CCWGG | 3 cut(s) | 277, 451, 1366 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1325, 1357 |
| AluBI | AGCT | 8 cut(s) | 397, 937, 1248, 1442, 1450, 1471, 1478, 1549 |
| AluI | AGCT | 8 cut(s) | 397, 937, 1248, 1442, 1450, 1471, 1478, 1549 |
| Alw21I | GWGCWC | 1 cut(s) | 1707 |
| Alw26I | GTCTC | 2 cut(s) | 69, 135 |
| AlwI | GGATC | 1 cut(s) | 1295 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1039, 1562, 1737 |
| AoxI | GGCC | 3 cut(s) | 300, 1417, 1426 |
| ApeKI | GCWGC | 4 cut(s) | 296, 1202, 1646, 1655 |
| ApoI | RAATTY | 1 cut(s) | 1385 |
| AseI | ATTAAT | 1 cut(s) | 539 |
| AsiGI | ACCGGT | 1 cut(s) | 992 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 249 |
| AspLEI | GCGC | 1 cut(s) | 10 |
| AspS9I | GGNCC | 4 cut(s) | 361, 425, 1370, 1681 |
| AsuC2I | CCSGG | 1 cut(s) | 701 |
| AsuHPI | GGTGA | 5 cut(s) | 163, 656, 689, 823, 922 |
| AvaII | GGWCC | 4 cut(s) | 361, 425, 1370, 1681 |
| BanI | GGYRCC | 2 cut(s) | 7, 170 |
| BbsI | GAAGAC | 1 cut(s) | 252 |
| Bbv12I | GWGCWC | 1 cut(s) | 1707 |
| BbvI | GCAGC | 4 cut(s) | 283, 1189, 1633, 1642 |
| BccI | CCATC | 6 cut(s) | 322, 501, 607, 953, 1505, 1677 |
| BciT130I | CCWGG | 3 cut(s) | 279, 453, 1368 |
| BciVI | GTATCC | 1 cut(s) | 759 |
| BcnI | CCSGG | 1 cut(s) | 701 |
| BcoDI | GTCTC | 2 cut(s) | 69, 135 |
| BfaI | CTAG | 5 cut(s) | 269, 374, 1128, 1263, 1584 |
| BfmI | CTRYAG | 1 cut(s) | 1203 |
| BfoI | RGCGCY | 1 cut(s) | 11 |
| BfuI | GTATCC | 1 cut(s) | 759 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 213, 1425 |
| BglII | AGATCT | 1 cut(s) | 850 |
| BisI | GCNGC | 6 cut(s) | 11, 297, 300, 1203, 1647, 1656 |
| BlsI | GCNGC | 6 cut(s) | 12, 298, 301, 1204, 1648, 1657 |
| Bme1390I | CCNGG | 4 cut(s) | 279, 453, 701, 1368 |
| Bme18I | GGWCC | 4 cut(s) | 361, 425, 1370, 1681 |
| BmgT120I | GGNCC | 4 cut(s) | 361, 425, 1370, 1681 |
| BmiI | GGNNCC | 3 cut(s) | 9, 172, 1683 |
| BmrFI | CCNGG | 4 cut(s) | 279, 453, 701, 1368 |
| BmsI | GCATC | 4 cut(s) | 1096, 1180, 1549, 1649 |
| BpiI | GAAGAC | 1 cut(s) | 252 |
| BpmI | CTGGAG | 5 cut(s) | 225, 300, 474, 1245, 1500 |
| BpuMI | CCSGG | 1 cut(s) | 701 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1048 |
| BsaHI | GRCGYC | 1 cut(s) | 8 |
| BsaJI | CCNNGG | 4 cut(s) | 147, 211, 303, 1366 |
| BsaWI | WCCGGW | 1 cut(s) | 992 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 132, 162, 381, 411, 840, 870, 1694, 1724 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 284, 374, 434, 503, 783, 1657, 1675 |
| Bse118I | RCCGGY | 2 cut(s) | 173, 992 |
| Bse1I | ACTGG | 3 cut(s) | 411, 428, 1228 |
| Bse3DI | GCAATG | 1 cut(s) | 184 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1048 |
| BseBI | CCWGG | 3 cut(s) | 279, 453, 1368 |
| BseDI | CCNNGG | 4 cut(s) | 147, 211, 303, 1366 |
| BseGI | GGATG | 6 cut(s) | 313, 333, 512, 553, 973, 1339 |
| BseJI | GATNNNNATC | 1 cut(s) | 1048 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 284, 374, 434, 503, 783, 1657, 1675 |
| BseMI | GCAATG | 1 cut(s) | 184 |
| BseMII | CTCAG | 3 cut(s) | 1031, 1569, 1629 |
| BseNI | ACTGG | 3 cut(s) | 411, 428, 1228 |
| BseRI | GAGGAG | 2 cut(s) | 121, 1481 |
| BseXI | GCAGC | 4 cut(s) | 283, 1189, 1633, 1642 |
| Bsh1236I | CGCG | 1 cut(s) | 1002 |
| BshFI | GGCC | 3 cut(s) | 302, 1419, 1428 |
| BshNI | GGYRCC | 2 cut(s) | 7, 170 |
| BshTI | ACCGGT | 1 cut(s) | 992 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1707 |
| BsiSI | CCGG | 4 cut(s) | 138, 174, 701, 993 |
| BslFI | GGGAC | 3 cut(s) | 40, 402, 1667 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 284, 374, 434, 503, 783, 1657, 1675 |
| BsmAI | GTCTC | 2 cut(s) | 69, 135 |
| BsmBI | CGTCTC | 1 cut(s) | 69 |
| BsmFI | GGGAC | 3 cut(s) | 40, 402, 1667 |
| BsmI | GAATGC | 3 cut(s) | 202, 517, 1569 |
| BsnI | GGCC | 3 cut(s) | 302, 1419, 1428 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1707 |
| Bsp1407I | TGTACA | 1 cut(s) | 1403 |
| Bsp143I | GATC | 4 cut(s) | 47, 850, 1300, 1551 |
| Bsp19I | CCATGG | 1 cut(s) | 303 |
| BspACI | CCGC | 7 cut(s) | 11, 265, 299, 965, 1000, 1413, 1658 |
| BspANI | GGCC | 3 cut(s) | 302, 1419, 1428 |
| BspCNI | CTCAG | 3 cut(s) | 1032, 1568, 1628 |
| BspFNI | CGCG | 1 cut(s) | 1002 |
| BspLI | GGNNCC | 3 cut(s) | 9, 172, 1683 |
| BspMAI | CTGCAG | 1 cut(s) | 1207 |
| BspPI | GGATC | 1 cut(s) | 1295 |
| BspT107I | GGYRCC | 2 cut(s) | 7, 170 |
| BsrDI | GCAATG | 1 cut(s) | 184 |
| BsrFI | RCCGGY | 2 cut(s) | 173, 992 |
| BsrGI | TGTACA | 1 cut(s) | 1403 |
| BsrI | ACTGG | 3 cut(s) | 411, 428, 1228 |
| BssAI | RCCGGY | 2 cut(s) | 173, 992 |
| BssECI | CCNNGG | 4 cut(s) | 147, 211, 303, 1366 |
| BssMI | GATC | 4 cut(s) | 47, 850, 1300, 1551 |
| BssNI | GRCGYC | 1 cut(s) | 8 |
| BssT1I | CCWWGG | 1 cut(s) | 303 |
| Bst2UI | CCWGG | 3 cut(s) | 279, 453, 1368 |
| Bst4CI | ACNGT | 5 cut(s) | 170, 762, 948, 1078, 1408 |
| Bst6I | CTCTTC | 2 cut(s) | 72, 411 |
| BstACI | GRCGYC | 1 cut(s) | 8 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1199, 1646 |
| BstAUI | TGTACA | 1 cut(s) | 1403 |
| BstC8I | GCNNGC | 6 cut(s) | 175, 684, 926, 939, 1452, 1660 |
| BstDEI | CTNAG | 4 cut(s) | 1040, 1249, 1555, 1615 |
| BstDSI | CCRYGG | 2 cut(s) | 147, 303 |
| BstF5I | GGATG | 6 cut(s) | 313, 333, 512, 553, 973, 1339 |
| BstFNI | CGCG | 1 cut(s) | 1002 |
| BstH2I | RGCGCY | 1 cut(s) | 11 |
| BstHHI | GCGC | 1 cut(s) | 10 |
| BstKTI | GATC | 4 cut(s) | 50, 853, 1303, 1554 |
| BstMAI | GTCTC | 2 cut(s) | 69, 135 |
| BstMBI | GATC | 4 cut(s) | 47, 850, 1300, 1551 |
| BstNI | CCWGG | 3 cut(s) | 279, 453, 1368 |
| BstNSI | RCATGY | 1 cut(s) | 686 |
| BstSCI | CCNGG | 4 cut(s) | 277, 451, 699, 1366 |
| BstSFI | CTRYAG | 1 cut(s) | 1203 |
| BstUI | CGCG | 1 cut(s) | 1002 |
| BstV1I | GCAGC | 4 cut(s) | 283, 1189, 1633, 1642 |
| BstV2I | GAAGAC | 1 cut(s) | 252 |
| BstX2I | RGATCY | 1 cut(s) | 850 |
| BstYI | RGATCY | 1 cut(s) | 850 |
| BsuI | GTATCC | 1 cut(s) | 759 |
| BsuRI | GGCC | 3 cut(s) | 302, 1419, 1428 |
| BtgI | CCRYGG | 2 cut(s) | 147, 303 |
| BtsCI | GGATG | 6 cut(s) | 313, 333, 512, 553, 973, 1339 |
| BtsIMutI | CAGTG | 4 cut(s) | 418, 435, 777, 1406 |
| Cac8I | GCNNGC | 6 cut(s) | 175, 684, 926, 939, 1452, 1660 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1039, 1562, 1737 |
| CfoI | GCGC | 1 cut(s) | 10 |
| Cfr10I | RCCGGY | 2 cut(s) | 173, 992 |
| Cfr13I | GGNCC | 4 cut(s) | 361, 425, 1370, 1681 |
| CseI | GACGC | 2 cut(s) | 109, 648 |
| Csp6I | GTAC | 4 cut(s) | 1037, 1067, 1315, 1404 |
| CspAI | ACCGGT | 1 cut(s) | 992 |
| CviAII | CATG | 5 cut(s) | 304, 566, 595, 683, 1392 |
| CviQI | GTAC | 4 cut(s) | 1037, 1067, 1315, 1404 |
| DdeI | CTNAG | 4 cut(s) | 1040, 1249, 1555, 1615 |
| DinI | GGCGCC | 1 cut(s) | 9 |
| DpnI | GATC | 4 cut(s) | 49, 852, 1302, 1553 |
| DpnII | GATC | 4 cut(s) | 47, 850, 1300, 1551 |
| DraI | TTTAAA | 1 cut(s) | 984 |
| EaeI | YGGCCR | 2 cut(s) | 300, 1417 |
| Eam1104I | CTCTTC | 2 cut(s) | 72, 411 |
| EarI | CTCTTC | 2 cut(s) | 72, 411 |
| EciI | GGCGGA | 1 cut(s) | 980 |
| Eco130I | CCWWGG | 1 cut(s) | 303 |
| Eco32I | GATATC | 1 cut(s) | 1260 |
| Eco47I | GGWCC | 4 cut(s) | 361, 425, 1370, 1681 |
| Eco57I | CTGAAG | 3 cut(s) | 354, 377, 1128 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1681 |
| EcoRII | CCWGG | 3 cut(s) | 277, 451, 1366 |
| EcoRV | GATATC | 1 cut(s) | 1260 |
| EcoT14I | CCWWGG | 1 cut(s) | 303 |
| EcoT22I | ATGCAT | 1 cut(s) | 1642 |
| EgeI | GGCGCC | 1 cut(s) | 9 |
| EheI | GGCGCC | 1 cut(s) | 9 |
| ErhI | CCWWGG | 1 cut(s) | 303 |
| Esp3I | CGTCTC | 1 cut(s) | 69 |
| FaeI | CATG | 5 cut(s) | 307, 569, 598, 686, 1395 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 837, 869, 1691, 1723 |
| FaqI | GGGAC | 3 cut(s) | 40, 402, 1667 |
| FatI | CATG | 5 cut(s) | 303, 565, 594, 682, 1391 |
| FauI | CCCGC | 1 cut(s) | 1651 |
| Fnu4HI | GCNGC | 6 cut(s) | 11, 297, 300, 1203, 1647, 1656 |
| FokI | GGATG | 6 cut(s) | 320, 340, 519, 560, 980, 1346 |
| Fsp4HI | GCNGC | 6 cut(s) | 11, 297, 300, 1203, 1647, 1656 |
| FspBI | CTAG | 5 cut(s) | 269, 374, 1128, 1263, 1584 |
| GlaI | GCGC | 1 cut(s) | 9 |
| GluI | GCNGC | 6 cut(s) | 11, 297, 300, 1203, 1647, 1656 |
| GsuI | CTGGAG | 5 cut(s) | 225, 300, 474, 1245, 1500 |
| HaeII | RGCGCY | 1 cut(s) | 11 |
| HaeIII | GGCC | 3 cut(s) | 302, 1419, 1428 |
| HapII | CCGG | 4 cut(s) | 138, 174, 701, 993 |
| HgaI | GACGC | 2 cut(s) | 109, 648 |
| HhaI | GCGC | 1 cut(s) | 10 |
| Hin1I | GRCGYC | 1 cut(s) | 8 |
| Hin1II | CATG | 5 cut(s) | 307, 569, 598, 686, 1395 |
| Hin6I | GCGC | 1 cut(s) | 8 |
| HinP1I | GCGC | 1 cut(s) | 8 |
| HincII | GTYRAC | 1 cut(s) | 765 |
| HindII | GTYRAC | 1 cut(s) | 765 |
| HinfI | GANTC | 6 cut(s) | 143, 154, 407, 473, 533, 1734 |
| HpaII | CCGG | 4 cut(s) | 138, 174, 701, 993 |
| HphI | GGTGA | 5 cut(s) | 163, 656, 689, 823, 922 |
| Hpy166II | GTNNAC | 3 cut(s) | 765, 1315, 1404 |
| Hpy188III | TCNNGA | 6 cut(s) | 108, 242, 824, 1263, 1328, 1345 |
| Hpy8I | GTNNAC | 3 cut(s) | 765, 1315, 1404 |
| Hpy99I | CGWCG | 1 cut(s) | 224 |
| HpyAV | CCTTC | 8 cut(s) | 114, 352, 663, 781, 1418, 1516, 1669, 1712 |
| HpyCH4III | ACNGT | 5 cut(s) | 170, 762, 948, 1078, 1408 |
| HpyCH4IV | ACGT | 1 cut(s) | 222 |
| HpyF3I | CTNAG | 4 cut(s) | 1040, 1249, 1555, 1615 |
| HpySE526I | ACGT | 1 cut(s) | 222 |
| Hsp92I | GRCGYC | 1 cut(s) | 8 |
| Hsp92II | CATG | 5 cut(s) | 307, 569, 598, 686, 1395 |
| HspAI | GCGC | 1 cut(s) | 8 |
| KasI | GGCGCC | 1 cut(s) | 7 |
| KroI | GCCGGC | 1 cut(s) | 173 |
| KroNI | GCCGGC | 1 cut(s) | 175 |
| Kzo9I | GATC | 4 cut(s) | 47, 850, 1300, 1551 |
| LmnI | GCTCC | 6 cut(s) | 402, 934, 1439, 1468, 1475, 1702 |
| Lsp1109I | GCAGC | 4 cut(s) | 283, 1189, 1633, 1642 |
| LweI | GCATC | 4 cut(s) | 1096, 1180, 1549, 1649 |
| MaeI | CTAG | 5 cut(s) | 269, 374, 1128, 1263, 1584 |
| MaeII | ACGT | 1 cut(s) | 222 |
| MaeIII | GTNAC | 5 cut(s) | 151, 644, 859, 1029, 1357 |
| MalI | GATC | 4 cut(s) | 49, 852, 1302, 1553 |
| MboI | GATC | 4 cut(s) | 47, 850, 1300, 1551 |
| MboII | GAAGA | 8 cut(s) | 15, 59, 68, 257, 428, 750, 1220, 1394 |
| MfeI | CAATTG | 1 cut(s) | 1434 |
| MflI | RGATCY | 1 cut(s) | 850 |
| MhlI | GDGCHC | 1 cut(s) | 1707 |
| MluCI | AATT | 6 cut(s) | 94, 540, 649, 692, 1385, 1434 |
| Mly113I | GGCGCC | 1 cut(s) | 8 |
| MlyI | GAGTC | 3 cut(s) | 137, 148, 527 |
| MmeI | TCCRAC | 2 cut(s) | 535, 1060 |
| Mph1103I | ATGCAT | 1 cut(s) | 1642 |
| MroNI | GCCGGC | 1 cut(s) | 173 |
| MroXI | GAANNNNTTC | 1 cut(s) | 249 |
| MseI | TTAA | 8 cut(s) | 225, 539, 983, 1073, 1217, 1320, 1541, 1712 |
| MslI | CAYNNNNRTG | 2 cut(s) | 308, 1574 |
| MspI | CCGG | 4 cut(s) | 138, 174, 701, 993 |
| MspR9I | CCNGG | 4 cut(s) | 279, 453, 701, 1368 |
| MunI | CAATTG | 1 cut(s) | 1434 |
| Mva1269I | GAATGC | 3 cut(s) | 202, 517, 1569 |
| MvaI | CCWGG | 3 cut(s) | 279, 453, 1368 |
| MvnI | CGCG | 1 cut(s) | 1002 |
| NaeI | GCCGGC | 1 cut(s) | 175 |
| NarI | GGCGCC | 1 cut(s) | 8 |
| NciI | CCSGG | 1 cut(s) | 701 |
| NcoI | CCATGG | 1 cut(s) | 303 |
| NdeII | GATC | 4 cut(s) | 47, 850, 1300, 1551 |
| NgoMIV | GCCGGC | 1 cut(s) | 173 |
| NlaIII | CATG | 5 cut(s) | 307, 569, 598, 686, 1395 |
| NlaIV | GGNNCC | 3 cut(s) | 9, 172, 1683 |
| NmeAIII | GCCGAG | 2 cut(s) | 192, 1445 |
| NmuCI | GTSAC | 2 cut(s) | 151, 644 |
| NsiI | ATGCAT | 1 cut(s) | 1642 |
| NspI | RCATGY | 1 cut(s) | 686 |
| PaeI | GCATGC | 1 cut(s) | 686 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 59, 219 |
| PctI | GAATGC | 3 cut(s) | 202, 517, 1569 |
| PdiI | GCCGGC | 1 cut(s) | 175 |
| PdmI | GAANNNNTTC | 1 cut(s) | 249 |
| PfeI | GAWTC | 3 cut(s) | 407, 473, 1734 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 503 |
| PfoI | TCCNGGA | 1 cut(s) | 277 |
| PinAI | ACCGGT | 1 cut(s) | 992 |
| PkrI | GCNGC | 6 cut(s) | 12, 298, 301, 1204, 1648, 1657 |
| PleI | GAGTC | 3 cut(s) | 137, 148, 527 |
| PluTI | GGCGCC | 1 cut(s) | 11 |
| PpsI | GAGTC | 3 cut(s) | 137, 148, 527 |
| PpuMI | RGGWCCY | 1 cut(s) | 1681 |
| PshBI | ATTAAT | 1 cut(s) | 539 |
| Psp5II | RGGWCCY | 1 cut(s) | 1681 |
| Psp6I | CCWGG | 3 cut(s) | 277, 451, 1366 |
| PspGI | CCWGG | 3 cut(s) | 277, 451, 1366 |
| PspN4I | GGNNCC | 3 cut(s) | 9, 172, 1683 |
| PspPI | GGNCC | 4 cut(s) | 361, 425, 1370, 1681 |
| PspPPI | RGGWCCY | 1 cut(s) | 1681 |
| PstI | CTGCAG | 1 cut(s) | 1207 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1039, 1562, 1737 |
| PsuI | RGATCY | 1 cut(s) | 850 |
| RsaI | GTAC | 4 cut(s) | 1038, 1068, 1316, 1405 |
| RsaNI | GTAC | 4 cut(s) | 1037, 1067, 1315, 1404 |
| RseI | CAYNNNNRTG | 2 cut(s) | 308, 1574 |
| SaqAI | TTAA | 8 cut(s) | 225, 539, 983, 1073, 1217, 1320, 1541, 1712 |
| SatI | GCNGC | 6 cut(s) | 11, 297, 300, 1203, 1647, 1656 |
| Sau3AI | GATC | 4 cut(s) | 47, 850, 1300, 1551 |
| Sau96I | GGNCC | 4 cut(s) | 361, 425, 1370, 1681 |
| SchI | GAGTC | 3 cut(s) | 137, 148, 527 |
| ScrFI | CCNGG | 4 cut(s) | 279, 453, 701, 1368 |
| SduI | GDGCHC | 1 cut(s) | 1707 |
| SfaNI | GCATC | 4 cut(s) | 1096, 1180, 1549, 1649 |
| SfcI | CTRYAG | 1 cut(s) | 1203 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1425 |
| SfoI | GGCGCC | 1 cut(s) | 9 |
| SinI | GGWCC | 4 cut(s) | 361, 425, 1370, 1681 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 308, 1574 |
| SphI | GCATGC | 1 cut(s) | 686 |
| Sse9I | AATT | 6 cut(s) | 94, 540, 649, 692, 1385, 1434 |
| SsiI | CCGC | 7 cut(s) | 11, 265, 299, 965, 1000, 1413, 1658 |
| SspDI | GGCGCC | 1 cut(s) | 7 |
| SspI | AATATT | 4 cut(s) | 732, 988, 1151, 1214 |
| SspMI | CTAG | 5 cut(s) | 269, 374, 1128, 1263, 1584 |
| StyD4I | CCNGG | 4 cut(s) | 277, 451, 699, 1366 |
| StyI | CCWWGG | 1 cut(s) | 303 |
| TaaI | ACNGT | 5 cut(s) | 170, 762, 948, 1078, 1408 |
| TaiI | ACGT | 1 cut(s) | 225 |
| TaqI | TCGA | 3 cut(s) | 46, 219, 943 |
| TaqII | GACCGA | 1 cut(s) | 378 |
| TasI | AATT | 6 cut(s) | 94, 540, 649, 692, 1385, 1434 |
| TatI | WGTACW | 1 cut(s) | 1403 |
| TauI | GCSGC | 2 cut(s) | 13, 302 |
| TfiI | GAWTC | 3 cut(s) | 407, 473, 1734 |
| Tru1I | TTAA | 8 cut(s) | 225, 539, 983, 1073, 1217, 1320, 1541, 1712 |
| Tru9I | TTAA | 8 cut(s) | 225, 539, 983, 1073, 1217, 1320, 1541, 1712 |
| TscAI | CASTG | 4 cut(s) | 418, 435, 784, 1406 |
| TseFI | GTSAC | 2 cut(s) | 151, 644 |
| TseI | GCWGC | 4 cut(s) | 296, 1202, 1646, 1655 |
| Tsp45I | GTSAC | 2 cut(s) | 151, 644 |
| TspDTI | ATGAA | 6 cut(s) | 336, 465, 569, 615, 621, 1731 |
| TspGWI | ACGGA | 3 cut(s) | 113, 136, 1392 |
| TspRI | CASTG | 4 cut(s) | 418, 435, 784, 1406 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 503 |
| VpaK11BI | GGWCC | 4 cut(s) | 361, 425, 1370, 1681 |
| VspI | ATTAAT | 1 cut(s) | 539 |
| XapI | RAATTY | 1 cut(s) | 1385 |
| XbaI | TCTAGA | 1 cut(s) | 1262 |
| XceI | RCATGY | 1 cut(s) | 686 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 504 |
| XmnI | GAANNNNTTC | 1 cut(s) | 249 |
| XspI | CTAG | 5 cut(s) | 269, 374, 1128, 1263, 1584 |
| Zsp2I | ATGCAT | 1 cut(s) | 1642 |