Rorug05G0186200

Belongs to the HisA HisF family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
18030993 .. 18037098
6106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0186200.1

Sequence Viewer

Length: 1740 bp
ATGGTTGATGGGTTTCAACTTTTGAACCATTTTGGCAATGGAAGCAGAGGTCCTCATCAGCCCTTAACTCCTATTGAGGGTGTGGCTCTGCGGCACTTGCAAATGGGTCATCTGCAAGTGAAAGCTTTGAATTCAATCTTTGCGCAATGGGGGATTGAGGCCAATGTGAAGCAGTGGAACACAACTGGAGACCCATGTAGTGGAGCTGCCATTGACTCCACCCCATTCGACGATGTCGATCACAACCCCTTCATCAAATGTGACTGTTCTGATAATGTCACTTGCCACATTACCCAACTGAAAGTTTATGCCTTGGATGTTGTTGGTGTACTTCCAGATGAGCTATGGACATTGAGCTACCTATTCAATCTTAATTTGGGTCAGAATTACTTGACAGGACCTCTCTCTGCTTCCATTGGAAATCTAACTAGCATGCAATACTTGAGCCTTGGCATTAATGCTTTATCGGGGGAGCTACCAAAGGAACTTGGAAATCTCACTGAATTGCTATCATTTGCTATTGGGACAAACAACTTTTCTGGTCCTCTGCCATCTGAACTAGGGAGTTTATCAAAATTACAACAACTTTGGGCATCAGATGTTGAACTCTCTGGCAGTATACCTGACTTCATAGGAAATTGGTCAAAGCTTACTTCCTTGAGGTTTCAAGGAAACTCCTTTGAAGGTCCTATACCATCTGCACTTTCCAATCTGACTTCTCTGACAGAGCTGTATATAACTGACATATCTACTACCAATGGGAGCTCTTCTCTTGTGTTTATTAAGGATATGAAGTCTCTATCTGTCTTAGTGCTAAGAAATAACAACATTTCTGATTCAATTCCTTCCAACATTGGAGAATACCAAAGTTTATCTCAGCTGGACTTGAGCTTCAACAATCTAACCGGACAAATACCAGACTTGCTGTTTAATTTGAGTTCTCTTTCCATCCTGTTTCTTGGAAACAATAAGTTGAATGGTACTCTACCTGAATCTAAAAGCTCATCTCTTCTCAATGTAGATTTATCATACAATAATCTAGTTGGGAGCATTCCTTCTTGGGTCAATGGAACGAATTTACAGCTTAATTTAGTTGCCAACAACTTCACCCTGGACAGTTCAAACAGCAGTGCTCTTCCTTCGGGGTTGAATTGCCTTCAAAAAGACTTTCCTTGCAACAGTGGGTCTGGAATTTATTATAACTTTGGGATCAAATGTGGGGGTCCTCAGATTATGTCTTCTAATAACATTGTGTATCAGACGGAAAATGAGACCCTTGGTCCAGCTACATATTTTGTGAATGACGAAAGCAGATGGGGAGTTAGCAACGTTGGGTATTTCACTGGAAGCAACAATCCTCAGTACACAATTTTCTCCTCATCTCAATTCAAAAATACTCTAGATTCTGAGCTATTCCAGACTGCAAGGCTCTCTGCTTCATCACTCAGATATTATGGCTTGGGGCTTCAGAATGGTAACTACACAGTGAACCTACAGTTTGCTGAACAAGCTATCCTAGATTCTACTACATGGAAAAGTCTTGGGAGACGTGTGTTTAATATTTATATCCAGGGAAATCTGGTTCTAAAGGATTTTGACATACGAAAGGTGGCAGGGGGATCTTTCCTAGCTGTTCAGAAGGAATACACGGCTCTGGTTTCAGAGAACTACCTTGAAATCCATCTCTTTTGGGCCGGAAAGGGGACTTGTTGTGTACCTGTGTCACGCCCCGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

579

Amino Acids

63.04

Weight (kDa)

4.89

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 182 - 269 1.2e-06 Leucine-rich repeat region
Malectin PF11721 402 - 575 3.3e-38 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1200
Acc16I TGCGCA 1 cut(s) 144
AccB7I CCANNNNNTGG 1 cut(s) 200
AccI GTMKAC 1 cut(s) 619
AciI CCGC 1 cut(s) 91
AclI AACGTT 1 cut(s) 1329
AclWI GGATC 2 cut(s) 1217, 1627
AcsI RAATTY 3 cut(s) 130, 1075, 1191
AcuI CTGAAG 1 cut(s) 1451
AfaI GTAC 4 cut(s) 330, 982, 1364, 1716
AfiI CCNNNNNNNGG 3 cut(s) 77, 200, 1701
AflIII ACRYGT 1 cut(s) 1549
AhdI GACNNNNNGTC 1 cut(s) 1278
AjiI CACGTC 1 cut(s) 1550
AjnI CCWGG 2 cut(s) 1110, 1569
AloI GAACNNNNNNTCC 4 cut(s) 1497, 1529, 1566, 1598
Alw21I GWGCWC 2 cut(s) 767, 1135
Alw26I GTCTC 4 cut(s) 183, 801, 1265, 1540
AlwI GGATC 2 cut(s) 1217, 1627
AoxI GGCC 2 cut(s) 159, 1692
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 3 cut(s) 130, 1075, 1191
AseI ATTAAT 1 cut(s) 456
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 7 cut(s) 50, 398, 542, 686, 1223, 1280, 1692
AsuC2I CCSGG 1 cut(s) 1731
AsuHPI GGTGA 1 cut(s) 1099
AvaII GGWCC 6 cut(s) 50, 398, 542, 686, 1223, 1280
BanII GRGCYC 1 cut(s) 767
BarI GAAGNNNNNNTAC 2 cut(s) 675, 707
BbsI GAAGAC 1 cut(s) 1230
Bbv12I GWGCWC 2 cut(s) 767, 1135
BbvI GCAGC 1 cut(s) 193
BccI CCATC 6 cut(s) 2, 559, 703, 956, 1308, 1689
BceAI ACGGC 1 cut(s) 1665
BciT130I CCWGG 2 cut(s) 1112, 1571
BcnI CCSGG 1 cut(s) 1731
BcoDI GTCTC 4 cut(s) 183, 801, 1265, 1540
BfaI CTAG 6 cut(s) 429, 560, 1040, 1400, 1517, 1628
BfmI CTRYAG 1 cut(s) 1493
BisI GCNGC 2 cut(s) 92, 207
BlsI GCNGC 2 cut(s) 93, 208
Bme1390I CCNGG 3 cut(s) 1112, 1571, 1731
Bme18I GGWCC 6 cut(s) 50, 398, 542, 686, 1223, 1280
BmeRI GACNNNNNGTC 1 cut(s) 1278
BmgBI CACGTC 1 cut(s) 1550
BmgT120I GGNCC 7 cut(s) 50, 398, 542, 686, 1223, 1280, 1692
BmiI GGNNCC 1 cut(s) 1224
BmrFI CCNGG 3 cut(s) 1112, 1571, 1731
BmsI GCATC 1 cut(s) 602
BpiI GAAGAC 1 cut(s) 1230
BplI GAGNNNNNCTC 2 cut(s) 754, 786
BpmI CTGGAG 1 cut(s) 207
BpuEI CTTGAG 3 cut(s) 463, 679, 907
BpuMI CCSGG 1 cut(s) 1731
BsaBI GATNNNNATC 1 cut(s) 237
BsaI GGTCTC 2 cut(s) 183, 1265
BsaJI CCNNGG 6 cut(s) 312, 448, 1110, 1276, 1570, 1729
BsaWI WCCGGW 1 cut(s) 905
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 200, 1701
Bse1I ACTGG 2 cut(s) 190, 1348
Bse3DI GCAATG 2 cut(s) 43, 152
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 2 cut(s) 1112, 1571
BseDI CCNNGG 6 cut(s) 312, 448, 1110, 1276, 1570, 1729
BseGI GGATG 2 cut(s) 322, 948
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 3 cut(s) 77, 200, 1701
BseMI GCAATG 2 cut(s) 43, 152
BseMII CTCAG 5 cut(s) 890, 1241, 1373, 1398, 1459
BseNI ACTGG 2 cut(s) 190, 1348
BseRI GAGGAG 1 cut(s) 1366
BseXI GCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 2 cut(s) 161, 1694
BsiHKAI GWGCWC 2 cut(s) 767, 1135
BsiSI CCGG 3 cut(s) 906, 1695, 1731
BslFI GGGAC 2 cut(s) 538, 1717
BslI CCNNNNNNNGG 3 cut(s) 77, 200, 1701
BsmAI GTCTC 4 cut(s) 183, 801, 1265, 1540
BsmBI CGTCTC 1 cut(s) 1540
BsmFI GGGAC 2 cut(s) 538, 1717
BsmI GAATGC 1 cut(s) 1050
BsnI GGCC 2 cut(s) 161, 1694
Bso31I GGTCTC 2 cut(s) 183, 1265
Bsp1286I GDGCHC 2 cut(s) 767, 1135
Bsp143I GATC 3 cut(s) 238, 1209, 1619
BspACI CCGC 1 cut(s) 91
BspANI GGCC 2 cut(s) 161, 1694
BspCNI CTCAG 5 cut(s) 889, 1240, 1372, 1399, 1458
BspLI GGNNCC 1 cut(s) 1224
BspPI GGATC 2 cut(s) 1217, 1627
BspQI GCTCTTC 2 cut(s) 772, 1140
BspTNI GGTCTC 2 cut(s) 183, 1265
BsrDI GCAATG 2 cut(s) 43, 152
BsrI ACTGG 2 cut(s) 190, 1348
BssECI CCNNGG 6 cut(s) 312, 448, 1110, 1276, 1570, 1729
BssMI GATC 3 cut(s) 238, 1209, 1619
BssNAI GTATAC 1 cut(s) 620
BssT1I CCWWGG 3 cut(s) 312, 448, 1276
Bst1107I GTATAC 1 cut(s) 620
Bst2UI CCWGG 2 cut(s) 1112, 1571
Bst4CI ACNGT 5 cut(s) 266, 1118, 1181, 1486, 1497
Bst6I CTCTTC 3 cut(s) 772, 1014, 1140
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 7 cut(s) 808, 815, 876, 1227, 1359, 1407, 1445
BstF5I GGATG 2 cut(s) 322, 948
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 3 cut(s) 241, 1212, 1622
BstMAI GTCTC 4 cut(s) 183, 801, 1265, 1540
BstMBI GATC 3 cut(s) 238, 1209, 1619
BstMWI GCNNNNNNNGC 3 cut(s) 42, 97, 1508
BstNI CCWGG 2 cut(s) 1112, 1571
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 3 cut(s) 1110, 1569, 1729
BstSFI CTRYAG 1 cut(s) 1493
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 1230
BstX2I RGATCY 1 cut(s) 1619
BstYI RGATCY 1 cut(s) 1619
BstZ17I GTATAC 1 cut(s) 620
BsuRI GGCC 2 cut(s) 161, 1694
BtrI CACGTC 1 cut(s) 1550
BtsCI GGATG 2 cut(s) 322, 948
BtsI GCAGTG 2 cut(s) 179, 1135
BtsIMutI CAGTG 6 cut(s) 179, 498, 1135, 1186, 1341, 1491
Cac8I GCNNGC 1 cut(s) 434
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 7 cut(s) 50, 398, 542, 686, 1223, 1280, 1692
Csp6I GTAC 4 cut(s) 329, 981, 1363, 1715
CviAII CATG 3 cut(s) 195, 433, 1530
CviQI GTAC 4 cut(s) 329, 981, 1363, 1715
DdeI CTNAG 7 cut(s) 808, 815, 876, 1227, 1359, 1407, 1445
DpnI GATC 3 cut(s) 240, 1211, 1621
DpnII GATC 3 cut(s) 238, 1209, 1619
DriI GACNNNNNGTC 1 cut(s) 1278
Eam1104I CTCTTC 3 cut(s) 772, 1014, 1140
Eam1105I GACNNNNNGTC 1 cut(s) 1278
EarI CTCTTC 3 cut(s) 772, 1014, 1140
Ecl136II GAGCTC 1 cut(s) 765
Eco130I CCWWGG 3 cut(s) 312, 448, 1276
Eco24I GRGCYC 1 cut(s) 767
Eco31I GGTCTC 2 cut(s) 183, 1265
Eco47I GGWCC 6 cut(s) 50, 398, 542, 686, 1223, 1280
Eco53kI GAGCTC 1 cut(s) 765
Eco57I CTGAAG 1 cut(s) 1451
EcoICRI GAGCTC 1 cut(s) 765
EcoO109I RGGNCCY 4 cut(s) 50, 398, 686, 1223
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 1110, 1569
EcoT14I CCWWGG 3 cut(s) 312, 448, 1276
EcoT38I GRGCYC 1 cut(s) 767
ErhI CCWWGG 3 cut(s) 312, 448, 1276
Esp3I CGTCTC 1 cut(s) 1540
FaeI CATG 3 cut(s) 198, 436, 1533
FaqI GGGAC 2 cut(s) 538, 1717
FatI CATG 3 cut(s) 194, 432, 1529
FblI GTMKAC 1 cut(s) 619
Fnu4HI GCNGC 2 cut(s) 92, 207
FokI GGATG 2 cut(s) 329, 935
FriOI GRGCYC 1 cut(s) 767
Fsp4HI GCNGC 2 cut(s) 92, 207
FspBI CTAG 6 cut(s) 429, 560, 1040, 1400, 1517, 1628
FspI TGCGCA 1 cut(s) 144
GlaI GCGC 1 cut(s) 144
GluI GCNGC 2 cut(s) 92, 207
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 2 cut(s) 161, 1694
HapII CCGG 3 cut(s) 906, 1695, 1731
HhaI GCGC 1 cut(s) 145
Hin1II CATG 3 cut(s) 198, 436, 1533
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HindIII AAGCTT 2 cut(s) 123, 647
HinfI GANTC 5 cut(s) 215, 836, 992, 1403, 1520
HpaII CCGG 3 cut(s) 906, 1695, 1731
HphI GGTGA 1 cut(s) 1099
Hpy166II GTNNAC 5 cut(s) 329, 620, 1365, 1489, 1715
Hpy188III TCNNGA 4 cut(s) 335, 1188, 1400, 1417
Hpy8I GTNNAC 5 cut(s) 329, 620, 1365, 1489, 1715
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 7 cut(s) 259, 677, 855, 1065, 1149, 1166, 1633
HpyCH4III ACNGT 5 cut(s) 266, 1118, 1181, 1486, 1497
HpyCH4IV ACGT 2 cut(s) 1329, 1549
HpyCH4V TGCA 6 cut(s) 100, 115, 436, 701, 1176, 1424
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 97, 1508
HpyF3I CTNAG 7 cut(s) 808, 815, 876, 1227, 1359, 1407, 1445
HpySE526I ACGT 2 cut(s) 1329, 1549
Hsp92II CATG 3 cut(s) 198, 436, 1533
HspAI GCGC 1 cut(s) 143
Kzo9I GATC 3 cut(s) 238, 1209, 1619
LguI GCTCTTC 2 cut(s) 772, 1140
LmnI GCTCC 4 cut(s) 203, 472, 762, 1047
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 602
MaeI CTAG 6 cut(s) 429, 560, 1040, 1400, 1517, 1628
MaeII ACGT 2 cut(s) 1329, 1549
MaeIII GTNAC 4 cut(s) 260, 277, 1475, 1722
MalI GATC 3 cut(s) 240, 1211, 1621
MboI GATC 3 cut(s) 238, 1209, 1619
MboII GAAGA 4 cut(s) 759, 1001, 1127, 1230
MflI RGATCY 1 cut(s) 1619
MhlI GDGCHC 2 cut(s) 767, 1135
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 873
MseI TTAA 7 cut(s) 65, 372, 456, 783, 930, 1086, 1557
MspA1I CMGCKG 1 cut(s) 880
MspI CCGG 3 cut(s) 906, 1695, 1731
MspR9I CCNGG 3 cut(s) 1112, 1571, 1731
Mva1269I GAATGC 1 cut(s) 1050
MvaI CCWGG 2 cut(s) 1112, 1571
MwoI GCNNNNNNNGC 3 cut(s) 42, 97, 1508
NciI CCSGG 1 cut(s) 1731
NdeII GATC 3 cut(s) 238, 1209, 1619
NlaIII CATG 3 cut(s) 198, 436, 1533
NlaIV GGNNCC 1 cut(s) 1224
NmuCI GTSAC 3 cut(s) 260, 277, 1722
NsbI TGCGCA 1 cut(s) 144
NspI RCATGY 1 cut(s) 436
PaeI GCATGC 1 cut(s) 436
PciSI GCTCTTC 2 cut(s) 772, 1140
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 1050
PfeI GAWTC 4 cut(s) 836, 992, 1403, 1520
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 200
PkrI GCNGC 2 cut(s) 93, 208
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PpuMI RGGWCCY 4 cut(s) 50, 398, 686, 1223
PshBI ATTAAT 1 cut(s) 456
PsiI TTATAA 1 cut(s) 1200
Psp124BI GAGCTC 1 cut(s) 767
Psp1406I AACGTT 1 cut(s) 1329
Psp5II RGGWCCY 4 cut(s) 50, 398, 686, 1223
Psp6I CCWGG 2 cut(s) 1110, 1569
PspGI CCWGG 2 cut(s) 1110, 1569
PspN4I GGNNCC 1 cut(s) 1224
PspPI GGNCC 7 cut(s) 50, 398, 542, 686, 1223, 1280, 1692
PspPPI RGGWCCY 4 cut(s) 50, 398, 686, 1223
PsuI RGATCY 1 cut(s) 1619
PsyI GACNNNGTC 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 4 cut(s) 330, 982, 1364, 1716
RsaNI GTAC 4 cut(s) 329, 981, 1363, 1715
SacI GAGCTC 1 cut(s) 767
SapI GCTCTTC 2 cut(s) 772, 1140
SaqAI TTAA 7 cut(s) 65, 372, 456, 783, 930, 1086, 1557
SatI GCNGC 2 cut(s) 92, 207
Sau3AI GATC 3 cut(s) 238, 1209, 1619
Sau96I GGNCC 7 cut(s) 50, 398, 542, 686, 1223, 1280, 1692
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 3 cut(s) 1112, 1571, 1731
SduI GDGCHC 2 cut(s) 767, 1135
SfaNI GCATC 1 cut(s) 602
SfcI CTRYAG 1 cut(s) 1493
SinI GGWCC 6 cut(s) 50, 398, 542, 686, 1223, 1280
SmlI CTYRAG 3 cut(s) 442, 658, 886
SmoI CTYRAG 3 cut(s) 442, 658, 886
SphI GCATGC 1 cut(s) 436
SsiI CCGC 1 cut(s) 91
SspI AATATT 1 cut(s) 1561
SspMI CTAG 6 cut(s) 429, 560, 1040, 1400, 1517, 1628
SstI GAGCTC 1 cut(s) 767
StyD4I CCNGG 3 cut(s) 1110, 1569, 1729
StyI CCWWGG 3 cut(s) 312, 448, 1276
TaaI ACNGT 5 cut(s) 266, 1118, 1181, 1486, 1497
TaiI ACGT 2 cut(s) 1332, 1552
TaqI TCGA 2 cut(s) 228, 237
TatI WGTACW 2 cut(s) 328, 1362
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 4 cut(s) 836, 992, 1403, 1520
Tru1I TTAA 7 cut(s) 65, 372, 456, 783, 930, 1086, 1557
Tru9I TTAA 7 cut(s) 65, 372, 456, 783, 930, 1086, 1557
TscAI CASTG 6 cut(s) 179, 505, 1135, 1186, 1348, 1491
TseFI GTSAC 3 cut(s) 260, 277, 1722
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 3 cut(s) 260, 277, 1722
TspDTI ATGAA 4 cut(s) 241, 619, 806, 1428
TspGWI ACGGA 1 cut(s) 1277
TspRI CASTG 6 cut(s) 179, 505, 1135, 1186, 1348, 1491
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 200
VpaK11BI GGWCC 6 cut(s) 50, 398, 542, 686, 1223, 1280
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 3 cut(s) 130, 1075, 1191
XbaI TCTAGA 1 cut(s) 1399
XceI RCATGY 1 cut(s) 436
XcmI CCANNNNNNNNNTGG 2 cut(s) 35, 342
XmiI GTMKAC 1 cut(s) 619
XspI CTAG 6 cut(s) 429, 560, 1040, 1400, 1517, 1628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.