Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000057.1

Orthogroup ID

OG0003239

Physical Location & Seq

Genomic Coordinates Reverse (-)

21084 .. 22810

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000057.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgggtgctcgaatttgttcaaccagttttgtttacatatgtggggctgataagatctccatcggaagtgacgcagtttatgctgcagaagaatatttaagaactggagtgaaaagtggaaaaagtagcttcgagcagatatctagagtttatggaaatcaggctgtggttgtaagcattgatccttgcaaagtgtacgttaaaaatcaaaatgatgttgagtttgagactataagggtaacaaacccagtcttgaattttgtcgttaaggttagcggtgggcgggaaagccaacgaatcggagcttatgagcttacaaaagcagttgaggagcttggtgctggagaaattctgctaaactgcattgattatgaaggtaaagtcagggaaaggggatttgatatagatttagtagagctgatctctgatttggtgaccattcccatgcttgcaagtagtggtgctggtgttgttgaacacttcttagaggttctcacgaaagcaaatgcatctgctgcctttgctgctggcatttttcattccaaggagggattcattctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

GATase His_biosynth

Protein Analysis

187

Amino Acids

20.18

Weight (kDa)

5.02

Isoelectric Point (pI)

10.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26900
fragaria_vesca	FvH4_5g29730 FvH4_5g29730 FvH4_5g29730
malus_domestica	MD03G1198000.v1.1 MD11G1214000.v1.1
prunus_persica	Prupe.4G217200_v2.0.a1
pyrus_communis	pycom03g14950
rosa_chinensis	RchiOBHm_Chr4g0412471 RchiOBHm_Chr5g0040621 RchiOBHm_Chr5g0040671
rosa_laevigata	RLG00000008296 RLG00000033991 RLG00000033993
rosa_multiflora	Rmu_co8258425.1_g000001 Rmu_sc0000057.1_g000007 Rmu_sc0002604.1_g000021 Rmu_sc0003916.1_g000009
rosa_roxburghii	Rroxscaffold_161G00448020 Rroxscaffold_1G00040000 Rroxscaffold_5G00356630
rosa_rugosa	Rorug04G0104000.1 Rorug05G0186200 Rorug05G0186300
rosa_samantha	Rh1DG043400 Rh4AG173300 Rh4BG172600 Rh4CG184200 Rh4DG168700 Rh5AG272700 Rh5BG277100 Rh5BG277700 Rh5CG309600 Rh5DG285600
rosa_wichuraiana	Rw0G015610 Rw1G002220 Rw5G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	276, 283
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	3 cut(s)	12, 256, 348
AfaI	GTAC	1 cut(s)	197
AgsI	TTSAA	3 cut(s)	21, 256, 476
AjuI	GAANNNNNNNTTGG	1 cut(s)	536
AluBI	AGCT	5 cut(s)	129, 305, 313, 334, 418
AluI	AGCT	5 cut(s)	129, 305, 313, 334, 418
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	176
ApeKI	GCWGC	3 cut(s)	83, 515, 524
ApoI	RAATTY	3 cut(s)	12, 256, 348
Asp700I	GAANNNNTTC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	70, 502, 511
BccI	CCATC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	84
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	3 cut(s)	84, 516, 525
BlsI	GCNGC	3 cut(s)	85, 517, 526
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	518
BmuI	ACTGGG	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	2 cut(s)	126, 363
BsaBI	GATNNNNATC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	543
Bse1I	ACTGG	3 cut(s)	24, 109, 248
Bse8I	GATNNNNATC	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	543
BseJI	GATNNNNATC	1 cut(s)	59
BseNI	ACTGG	3 cut(s)	24, 109, 248
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	3 cut(s)	70, 502, 511
BsiHKAI	GWGCWC	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	54, 181, 420
BspACI	CCGC	2 cut(s)	276, 283
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	1 cut(s)	176
BsrI	ACTGG	3 cut(s)	24, 109, 248
BssECI	CCNNGG	1 cut(s)	543
BssMI	GATC	3 cut(s)	54, 181, 420
BssT1I	CCWWGG	1 cut(s)	543
BstAPI	GCANNNNNTGC	2 cut(s)	80, 515
BstC8I	GCNNGC	2 cut(s)	450, 529
BstDEI	CTNAG	1 cut(s)	484
BstEII	GGTNACC	1 cut(s)	433
BstKTI	GATC	3 cut(s)	57, 184, 423
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	54, 181, 420
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 515, 521, 524
BstPI	GGTNACC	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	70, 502, 511
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	450, 529
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	445
CviJI	RGCY	8 cut(s)	47, 129, 164, 291, 305, 313, 334, 418
CviKI_1	RGCY	8 cut(s)	47, 129, 164, 291, 305, 313, 334, 418
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	484
DpnI	GATC	3 cut(s)	56, 183, 422
DpnII	GATC	3 cut(s)	54, 181, 420
Eco130I	CCWWGG	1 cut(s)	543
Eco32I	GATATC	1 cut(s)	141
Eco91I	GGTNACC	1 cut(s)	433
EcoO65I	GGTNACC	1 cut(s)	433
EcoRV	GATATC	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	543
EcoT22I	ATGCAT	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	1 cut(s)	448
FaiI	YATR	9 cut(s)	38, 40, 81, 153, 233, 309, 372, 404, 446
FatI	CATG	1 cut(s)	444
FauI	CCCGC	1 cut(s)	276
FauNDI	CATATG	1 cut(s)	38
Fnu4HI	GCNGC	3 cut(s)	84, 516, 525
Fsp4HI	GCNGC	3 cut(s)	84, 516, 525
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	3 cut(s)	84, 516, 525
GsuI	CTGGAG	2 cut(s)	126, 363
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	448
HinfI	GANTC	2 cut(s)	297, 552
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	2 cut(s)	34, 196
Hpy188I	TCNGA	3 cut(s)	65, 302, 427
Hpy188III	TCNNGA	3 cut(s)	144, 253, 496
Hpy8I	GTNNAC	2 cut(s)	34, 196
HpyAV	CCTTC	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	5 cut(s)	86, 189, 363, 452, 509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 515, 521, 524
HpyF3I	CTNAG	1 cut(s)	484
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	54, 181, 420
LmnI	GCTCC	2 cut(s)	302, 331
LpnPI	CCDG	8 cut(s)	37, 90, 146, 261, 327, 370, 450, 513
Lsp1109I	GCAGC	3 cut(s)	70, 502, 511
LweI	GCATC	1 cut(s)	518
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	3 cut(s)	68, 238, 433
MalI	GATC	3 cut(s)	56, 183, 422
MboI	GATC	3 cut(s)	54, 181, 420
MboII	GAAGA	1 cut(s)	101
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	3 cut(s)	12, 256, 348
MnlI	CCTC	3 cut(s)	322, 481, 541
Mph1103I	ATGCAT	1 cut(s)	511
MroXI	GAANNNNTTC	1 cut(s)	16
MseI	TTAA	3 cut(s)	98, 201, 267
MslI	CAYNNNNRTG	1 cut(s)	443
MwoI	GCNNNNNNNGC	4 cut(s)	80, 515, 521, 524
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	3 cut(s)	54, 181, 420
NlaIII	CATG	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	68, 433
NsiI	ATGCAT	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	297, 552
PkrI	GCNGC	3 cut(s)	85, 517, 526
PspEI	GGTNACC	1 cut(s)	433
PstI	CTGCAG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	3 cut(s)	98, 201, 267
SatI	GCNGC	3 cut(s)	84, 516, 525
Sau3AI	GATC	3 cut(s)	54, 181, 420
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	9 cut(s)	131, 201, 273, 307, 315, 336, 379, 420, 492
SfaNI	GCATC	1 cut(s)	518
SfcI	CTRYAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	12, 256, 348
SsiI	CCGC	2 cut(s)	276, 283
SspI	AATATT	1 cut(s)	95
SspMI	CTAG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	543
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	10, 132
TasI	AATT	3 cut(s)	12, 256, 348
TfiI	GAWTC	2 cut(s)	297, 552
Tru1I	TTAA	3 cut(s)	98, 201, 267
Tru9I	TTAA	3 cut(s)	98, 201, 267
TseFI	GTSAC	2 cut(s)	68, 433
TseI	GCWGC	3 cut(s)	83, 515, 524
Tsp45I	GTSAC	2 cut(s)	68, 433
TspDTI	ATGAA	3 cut(s)	387, 527, 544
XapI	RAATTY	3 cut(s)	12, 256, 348
XbaI	TCTAGA	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	16
XspI	CTAG	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.