Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8258425.1

Orthogroup ID

OG0003239

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 782

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8258425.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 169 bp

atgtttccatttcaaggtttttcttatcgtatactaacatcttatctgatgtttgttcttaaggttagcggtggccgggaaggcagaccaattggagcttatgagctcgcaaaagcagttgaggagcttggagctagagaaattctgctaaactacattgattgctatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

GATase His_biosynth

Protein Analysis

56

Amino Acids

6.4

Weight (kDa)

6.11

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26900
fragaria_vesca	FvH4_5g29730 FvH4_5g29730 FvH4_5g29730
malus_domestica	MD03G1198000.v1.1 MD11G1214000.v1.1
prunus_persica	Prupe.4G217200_v2.0.a1
pyrus_communis	pycom03g14950
rosa_chinensis	RchiOBHm_Chr4g0412471 RchiOBHm_Chr5g0040621 RchiOBHm_Chr5g0040671
rosa_laevigata	RLG00000008296 RLG00000033991 RLG00000033993
rosa_multiflora	Rmu_co8258425.1_g000001 Rmu_sc0000057.1_g000007 Rmu_sc0002604.1_g000021 Rmu_sc0003916.1_g000009
rosa_roxburghii	Rroxscaffold_161G00448020 Rroxscaffold_1G00040000 Rroxscaffold_5G00356630
rosa_rugosa	Rorug04G0104000.1 Rorug05G0186200 Rorug05G0186300
rosa_samantha	Rh1DG043400 Rh4AG173300 Rh4BG172600 Rh4CG184200 Rh4DG168700 Rh5AG272700 Rh5BG277100 Rh5BG277700 Rh5CG309600 Rh5DG285600
rosa_wichuraiana	Rw0G015610 Rw1G002220 Rw5G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	31
AciI	CCGC	1 cut(s)	69
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	4 cut(s)	98, 106, 127, 134
AluI	AGCT	4 cut(s)	98, 106, 127, 134
Alw21I	GWGCWC	1 cut(s)	108
AoxI	GGCC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	141
AsuC2I	CCSGG	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	77
BfaI	CTAG	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	59
BglI	GCCNNNNNGGC	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	14
BsnI	GGCC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	59
BssNAI	GTATAC	1 cut(s)	32
Bst1107I	GTATAC	1 cut(s)	32
BstAFI	CTTAAG	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	75
BstZ17I	GTATAC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	108
CviJI	RGCY	5 cut(s)	75, 98, 106, 127, 134
CviKI_1	RGCY	5 cut(s)	75, 98, 106, 127, 134
EaeI	YGGCCR	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	108
FaiI	YATR	3 cut(s)	32, 102, 168
FblI	GTMKAC	1 cut(s)	31
FriOI	GRGCYC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	76
HpaII	CCGG	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
LmnI	GCTCC	3 cut(s)	95, 124, 131
LpnPI	CCDG	1 cut(s)	89
MaeI	CTAG	1 cut(s)	135
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	2 cut(s)	90, 141
MnlI	CCTC	1 cut(s)	115
MseI	TTAA	1 cut(s)	60
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	81
NciI	CCSGG	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	6 cut(s)	19, 66, 100, 108, 129, 136
SgeI	CNNG	6 cut(s)	26, 88, 89, 119, 140, 147
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	90, 141
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	135
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	75
TasI	AATT	2 cut(s)	90, 141
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
Vha464I	CTTAAG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.