Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003239

Physical Location & Seq

Genomic Coordinates Forward (+)

35962886 .. 35965658

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00356630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGACAAGGTCAGCTTTCTGCATATTAACGGTTTCTGGGACTCCCCTTTGGGTGCCTTGCCTATGCTACAGGTATTAAGATATGCATCAGAAAATGCTTTTGTGCCATTAACAGTTGCAGGTAGCATTAGAGATTTTACCGATGCAACTAGCAGATGTGGGGCTGATAAGATCTCCATCGGAAGTGACACAGTTTATGCTGCAGAAGAATATTTAAGAACTGGAGTGAAAAGCAGAAAAAGCAGCTTCGAGCAGATATCTAGAGTTTATGGAAATCAGGCTGTGGTTGTAAGCATTTATCCTTGCAAAGTGTACGTTAAAAATCAAAATGATGTTGAGTTCGAGACTATAAGGGTCAGGGAAAGGGGATTTGATATAGATTTAGTAAGGCTGATCTCTGATGTGGTGACCATTCCCATGCTTGCAAGTAGTGGTGCTGGTGTTGTTGAACACTTCTCAGAGGTTCTCACGAAAGCAAATGTGTCTGCTGCCTTAATTTGCTGCTGGCATTTTTCATCCCAAGGAGGTAATACAGTCTTTTACTTGATTAATAGTGCTCCAAGTGCTGATGATTATGCTCGTATGAACAAGCAGATTATGATTGTTGCAGGGATTCATTCTGTAAAGGAGCACTTGCTAAAGGAAGGCATAGAAGTCAGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

GATase His_biosynth

Protein Analysis

221

Amino Acids

24.39

Weight (kDa)

6.21

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26900
fragaria_vesca	FvH4_5g29730 FvH4_5g29730 FvH4_5g29730
malus_domestica	MD03G1198000.v1.1 MD11G1214000.v1.1
prunus_persica	Prupe.4G217200_v2.0.a1
pyrus_communis	pycom03g14950
rosa_chinensis	RchiOBHm_Chr4g0412471 RchiOBHm_Chr5g0040621 RchiOBHm_Chr5g0040671
rosa_laevigata	RLG00000008296 RLG00000033991 RLG00000033993
rosa_multiflora	Rmu_co8258425.1_g000001 Rmu_sc0000057.1_g000007 Rmu_sc0002604.1_g000021 Rmu_sc0003916.1_g000009
rosa_roxburghii	Rroxscaffold_161G00448020 Rroxscaffold_1G00040000 Rroxscaffold_5G00356630
rosa_rugosa	Rorug04G0104000.1 Rorug05G0186200 Rorug05G0186300
rosa_samantha	Rh1DG043400 Rh4AG173300 Rh4BG172600 Rh4CG184200 Rh4DG168700 Rh5AG272700 Rh5BG277100 Rh5BG277700 Rh5CG309600 Rh5DG285600
rosa_wichuraiana	Rw0G015610 Rw1G002220 Rw5G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	449
AluBI	AGCT	2 cut(s)	15, 246
AluI	AGCT	2 cut(s)	15, 246
Alw21I	GWGCWC	2 cut(s)	559, 633
Alw26I	GTCTC	1 cut(s)	338
AlwNI	CAGNNNCTG	1 cut(s)	663
ApeKI	GCWGC	4 cut(s)	200, 243, 488, 501
AseI	ATTAAT	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	559, 633
BbvI	GCAGC	4 cut(s)	187, 255, 475, 488
BccI	CCATC	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	2 cut(s)	150, 261
BfmI	CTRYAG	2 cut(s)	68, 201
BfuAI	ACCTGC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	4 cut(s)	201, 244, 489, 502
BlsI	GCNGC	4 cut(s)	202, 245, 490, 503
BmiI	GGNNCC	1 cut(s)	55
BmsI	GCATC	2 cut(s)	95, 133
BpmI	CTGGAG	1 cut(s)	243
BsaBI	GATNNNNATC	2 cut(s)	85, 176
BsaJI	CCNNGG	1 cut(s)	520
Bse1I	ACTGG	1 cut(s)	226
Bse8I	GATNNNNATC	2 cut(s)	85, 176
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	1 cut(s)	515
BseJI	GATNNNNATC	2 cut(s)	85, 176
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	226
BseXI	GCAGC	4 cut(s)	187, 255, 475, 488
BshNI	GGYRCC	1 cut(s)	53
BsiHKAI	GWGCWC	2 cut(s)	559, 633
BslFI	GGGAC	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	53
Bsp1286I	GDGCHC	2 cut(s)	559, 633
Bsp143I	GATC	2 cut(s)	171, 393
BspCNI	CTCAG	1 cut(s)	470
BspLI	GGNNCC	1 cut(s)	55
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	2 cut(s)	171, 393
BssT1I	CCWWGG	1 cut(s)	520
Bst4CI	ACNGT	4 cut(s)	32, 115, 193, 535
BstC8I	GCNNGC	2 cut(s)	423, 506
BstDEI	CTNAG	1 cut(s)	457
BstEII	GGTNACC	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	515
BstKTI	GATC	2 cut(s)	174, 396
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	2 cut(s)	171, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 563
BstPI	GGTNACC	1 cut(s)	406
BstSFI	CTRYAG	2 cut(s)	68, 201
BstV1I	GCAGC	4 cut(s)	187, 255, 475, 488
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	515
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	423, 506
CaiI	CAGNNNCTG	1 cut(s)	663
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	1 cut(s)	418
CviJI	RGCY	5 cut(s)	15, 164, 246, 281, 391
CviKI_1	RGCY	5 cut(s)	15, 164, 246, 281, 391
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	2 cut(s)	173, 395
DpnII	GATC	2 cut(s)	171, 393
Eco130I	CCWWGG	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	406
EcoO65I	GGTNACC	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	1 cut(s)	421
FalI	AAGNNNNNCTT	3 cut(s)	31, 617, 649
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	417
Fnu4HI	GCNGC	4 cut(s)	201, 244, 489, 502
FokI	GGATG	1 cut(s)	502
Fsp4HI	GCNGC	4 cut(s)	201, 244, 489, 502
FspBI	CTAG	2 cut(s)	150, 261
GluI	GCNGC	4 cut(s)	201, 244, 489, 502
GsuI	CTGGAG	1 cut(s)	243
Hin1II	CATG	1 cut(s)	421
HinfI	GANTC	3 cut(s)	41, 613, 660
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	6 cut(s)	91, 182, 400, 460, 659, 665
Hpy188III	TCNNGA	3 cut(s)	261, 343, 469
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	4 cut(s)	32, 115, 193, 535
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	8 cut(s)	22, 86, 119, 146, 203, 306, 425, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 563
HpyF3I	CTNAG	1 cut(s)	457
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	171, 393
LmnI	GCTCC	2 cut(s)	562, 628
LpnPI	CCDG	9 cut(s)	22, 56, 105, 207, 263, 343, 423, 490, 594
Lsp1109I	GCAGC	4 cut(s)	187, 255, 475, 488
LweI	GCATC	2 cut(s)	95, 133
MaeI	CTAG	2 cut(s)	150, 261
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	185, 406
MalI	GATC	2 cut(s)	173, 395
MboI	GATC	2 cut(s)	171, 393
MboII	GAAGA	1 cut(s)	218
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	2 cut(s)	559, 633
MluCI	AATT	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	454, 518
Mph1103I	ATGCAT	1 cut(s)	88
MseI	TTAA	7 cut(s)	27, 77, 110, 215, 318, 494, 549
MslI	CAYNNNNRTG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	240, 563
NdeII	GATC	2 cut(s)	171, 393
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	2 cut(s)	185, 406
NsiI	ATGCAT	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	613, 660
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	202, 245, 490, 503
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PshBI	ATTAAT	1 cut(s)	549
PspEI	GGTNACC	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	663
PsuI	RGATCY	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	8
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	7 cut(s)	27, 77, 110, 215, 318, 494, 549
SatI	GCNGC	4 cut(s)	201, 244, 489, 502
Sau3AI	GATC	2 cut(s)	171, 393
SchI	GAGTC	1 cut(s)	35
SduI	GDGCHC	2 cut(s)	559, 633
SetI	ASST	8 cut(s)	12, 17, 75, 124, 248, 318, 465, 529
SfaNI	GCATC	2 cut(s)	95, 133
SfcI	CTRYAG	2 cut(s)	68, 201
SmiMI	CAYNNNNRTG	1 cut(s)	416
Sse9I	AATT	1 cut(s)	495
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	2 cut(s)	150, 261
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	4 cut(s)	32, 115, 193, 535
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	249, 342
TasI	AATT	1 cut(s)	495
TfiI	GAWTC	2 cut(s)	613, 660
Tru1I	TTAA	7 cut(s)	27, 77, 110, 215, 318, 494, 549
Tru9I	TTAA	7 cut(s)	27, 77, 110, 215, 318, 494, 549
TseFI	GTSAC	2 cut(s)	185, 406
TseI	GCWGC	4 cut(s)	200, 243, 488, 501
Tsp45I	GTSAC	2 cut(s)	185, 406
TspDTI	ATGAA	3 cut(s)	504, 599, 605
Tth111I	GACNNNGTC	1 cut(s)	8
VspI	ATTAAT	1 cut(s)	549
XbaI	TCTAGA	1 cut(s)	260
XspI	CTAG	2 cut(s)	150, 261
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.