Rroxscaffold_161G00448020

Belongs to the HisA HisF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000161
OG0003239
Physical Location & Seq
Forward (+)
11810 .. 15439
3630 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_161G00448020.1

Sequence Viewer

Length: 234 bp
ATGAAGGTCAGGGAAAGGGGATTTGATATAGATTTAGTAAGGCTGATCTCTGATGTGGTGACCATTCCCATGCTTGCAAGTAGTGGTGCTGGTGTTGTTGAACACTTCTCAGAGGTTCTCACGAAAGCAAATGTGTCTGCTGCCTTAATTTGCTGCTGGCATTTTTCATCCCAAGGAGGGATTCATTCTGTAAAGGAGCACTTGCTAAAGGAAGGCATAGAAGTCAGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230
Pfam Domains
Protein Families
GATase His_biosynth

Protein Analysis

77

Amino Acids

8.43

Weight (kDa)

6.39

Isoelectric Point (pI)

22.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_biosynth PF00977 6 - 50 4.9e-06 Histidine biosynthesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
Alw21I GWGCWC 1 cut(s) 201
AlwNI CAGNNNCTG 1 cut(s) 231
ApeKI GCWGC 2 cut(s) 140, 153
AsuHPI GGTGA 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 127, 140
BisI GCNGC 2 cut(s) 141, 154
BlsI GCNGC 2 cut(s) 142, 155
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 127, 140
BsiHKAI GWGCWC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 75, 158
BstDEI CTNAG 1 cut(s) 109
BstEII GGTNACC 1 cut(s) 58
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstPI GGTNACC 1 cut(s) 58
BstV1I GCAGC 2 cut(s) 127, 140
BtsCI GGATG 1 cut(s) 167
Cac8I GCNNGC 2 cut(s) 75, 158
CaiI CAGNNNCTG 1 cut(s) 231
CviAII CATG 1 cut(s) 70
CviJI RGCY 1 cut(s) 43
CviKI_1 RGCY 1 cut(s) 43
DdeI CTNAG 1 cut(s) 109
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 172
Eco91I GGTNACC 1 cut(s) 58
EcoO65I GGTNACC 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 1 cut(s) 73
FaiI YATR 3 cut(s) 29, 71, 218
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 141, 154
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 2 cut(s) 141, 154
GluI GCNGC 2 cut(s) 141, 154
Hin1II CATG 1 cut(s) 73
HinfI GANTC 2 cut(s) 181, 228
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 4 cut(s) 52, 112, 227, 233
Hpy188III TCNNGA 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 1 cut(s) 73
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 2 cut(s) 75, 142
Lsp1109I GCAGC 2 cut(s) 127, 140
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 1 cut(s) 147
MnlI CCTC 2 cut(s) 106, 170
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 68
NdeII GATC 1 cut(s) 45
NlaIII CATG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 58
PfeI GAWTC 2 cut(s) 181, 228
PkrI GCNGC 2 cut(s) 142, 155
PspEI GGTNACC 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 2 cut(s) 141, 154
Sau3AI GATC 1 cut(s) 45
SduI GDGCHC 1 cut(s) 201
SetI ASST 2 cut(s) 9, 117
SgeI CNNG 9 cut(s) 22, 82, 86, 90, 102, 133, 169, 185, 214
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 1 cut(s) 147
StyI CCWWGG 1 cut(s) 172
TasI AATT 1 cut(s) 147
TfiI GAWTC 2 cut(s) 181, 228
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 2 cut(s) 140, 153
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 3 cut(s) 17, 156, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.