RLG00000033991

Belongs to the HisA HisF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003239
Physical Location & Seq
Reverse (-)
35099489 .. 35100091
603 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033991

Sequence Viewer

Length: 321 bp
ATGTTTCCATTCCAAGGTTTTTCTTATCGTATACTAACATCTTATCTGATGTTTGTTCTTAAGGTTAGCGGTGGGCGGGAAGGCAGACAAATTGGAGCCTATGAGCTTGCAAAAGCAGTTGAGGAGCTTGGAGCTGGAGAAATTCTGCTAAACTGCATTGGTTGCGATGGTCAAGGGAAAGGATTTGATATAGATTTACTAAAGCTCATCTCTGATGCTGTGACCATTCTCGTGATTGCAAGTAGTGGTGCTGGTGTTGTTGAACACTTCTCAGAGGTTTTCACGAAAACAAATTGTAATTACCGGATGGAACAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230
Pfam Domains
Protein Families
GATase His_biosynth

Protein Analysis

107

Amino Acids

11.56

Weight (kDa)

5.02

Isoelectric Point (pI)

19.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_biosynth PF00977 21 - 97 4.6e-17 Histidine biosynthesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 31
AciI CCGC 2 cut(s) 69, 76
AcsI RAATTY 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 14
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 4 cut(s) 106, 127, 134, 205
AluI AGCT 4 cut(s) 106, 127, 134, 205
ApoI RAATTY 1 cut(s) 141
BauI CACGAG 1 cut(s) 230
BccI CCATC 2 cut(s) 161, 301
BfrI CTTAAG 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 97
BmsI GCATC 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 14
BspACI CCGC 2 cut(s) 69, 76
BspCNI CTCAG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 97
BspTI CTTAAG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 13
BssNAI GTATAC 1 cut(s) 32
BssSI CACGAG 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 13
Bst1107I GTATAC 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 230
BstAFI CTTAAG 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 271
BstF5I GGATG 1 cut(s) 312
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstZ17I GTATAC 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 108
CviJI RGCY 5 cut(s) 98, 106, 127, 134, 205
CviKI_1 RGCY 5 cut(s) 98, 106, 127, 134, 205
DdeI CTNAG 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 13
FaiI YATR 3 cut(s) 32, 102, 191
FauI CCCGC 1 cut(s) 69
FblI GTMKAC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 156
HapII CCGG 1 cut(s) 304
HpaII CCGG 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 3 cut(s) 48, 214, 274
Hpy188III TCNNGA 2 cut(s) 232, 283
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 74
HpyCH4V TGCA 3 cut(s) 110, 156, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 271
LmnI GCTCC 3 cut(s) 95, 124, 131
LpnPI CCDG 3 cut(s) 120, 237, 317
LweI GCATC 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 220
MluCI AATT 5 cut(s) 90, 141, 292, 298, 316
MnlI CCTC 2 cut(s) 115, 268
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 162
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 60
SetI ASST 7 cut(s) 19, 66, 108, 129, 136, 207, 279
SfaNI GCATC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 5 cut(s) 90, 141, 292, 298, 316
SsiI CCGC 2 cut(s) 69, 76
StyI CCWWGG 1 cut(s) 13
TasI AATT 5 cut(s) 90, 141, 292, 298, 316
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
Vha464I CTTAAG 1 cut(s) 59
XapI RAATTY 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.