Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003273

Physical Location & Seq

Genomic Coordinates Forward (+)

19284619 .. 19286647

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G263400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAACCGCATCAAAGCAAACGCATCTCCATTTCTTCTGTGCTCCTCTTTCTAGTTTTATGCTCACAATATTCCACACCGGTCACTGCCCAAGAAGTTGAGGATGAAAGAGAGTTCGATTATCTTCAGGGAAGCGGGAAGGGGCCAAAGCAGTGGGGAGAAATGAAGAAAGAATGGGCTGCGTGTAAGAATGGAGGCATGCAATCTCCTATTGATTTATCAAGCCAGAGAGTCAAGCTAATCCCCAACTTGGGCAAGCTCAACACCGCTTACAAGCCTTCCAATGCCACTGTCAAGAACAGAGGCCATGATATTTCGATTGAATGGGTGGGCGACGCTGGATCCCTTAAGATAAATGGGACTGAGTATTTGCTCAAACAATGCCACTGGCACTCCCCTTCCGAGCATTCCATCAATGGAAGGAGGTATGACATGGAGCTCCACATGGTTCATCTAAGCCCCAATCCCAACGTTACGAATAAGATCGCTGTCGTCGCAGCGCTCTACAAGATTGGCCGCCCAGATTCCTTCCTCACTAAGTTGACAAGGGATATACAATCCATGACTGATCAAAAGGAAGAGAGAAGTGTGGGAATAATTGACCCTAACAAAATTAAAATCCCTGGGAAAAGCTATTACAGATACATGGGCTCACTCACCGTTCCTCCTTGCACCGAAGGCGTTATTTGGACCATCAATAAAAAGATAAGAACAGTCTCAAGAGATCAAGTAAAGCTATTTCGAGTGGCTGTGCATGATTATGCAGAGACGAATGCAAGGCCAGTACAACCACTCAACCTTCGAGAAATCCATGTCTACGACCAAGGCGCAAGGAGCACGAATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

283

Amino Acids

31.89

Weight (kDa)

9.42

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02430 FvH4_6g16680 FvH4_6g16682 FvH4_6g16682 FvH4_6g16682 FvH4_6g16690
malus_domestica	MD00G1067900.v1.1 MD03G1165000.v1.1
prunus_persica	Prupe.4G263400_v2.0.a1 Prupe.4G263500_v2.0.a1 Prupe.4G264600_v2.0.a1 Prupe.7G126600_v2.0.a1
pyrus_communis	pycom03g11960 pycom12g08900
rosa_chinensis	RchiOBHm_Chr3g0470641 RchiOBHm_Chr5g0050381
rosa_laevigata	RLG00000024251 RLG00000034701
rosa_multiflora	Rmu_co8293285.1_g000001 Rmu_co8361179.1_g000001 Rmu_sc0002115.1_g000025 Rmu_sc0005060.1_g000019 Rmu_sc0030351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030530 Rroxscaffold_6G00410640
rosa_rugosa	Rorug03G0111200 Rorug05G0260900
rosa_samantha	Rh3AG160900 Rh3BG185500 Rh3CG175800 Rh3DG189300 Rh5AG332300 Rh5BG342600 Rh5CG369800 Rh5DG355400
rosa_wichuraiana	Rw3G015220 Rw5G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	816
AciI	CCGC	4 cut(s)	8, 135, 267, 517
AclI	AACGTT	1 cut(s)	471
AclWI	GGATC	2 cut(s)	336, 349
AcoI	YGGCCR	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	786
AfeI	AGCGCT	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	250, 251
AflII	CTTAAG	1 cut(s)	347
AgeI	ACCGGT	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	5 cut(s)	238, 259, 439, 633, 736
AluI	AGCT	5 cut(s)	238, 259, 439, 633, 736
Alw21I	GWGCWC	3 cut(s)	45, 441, 839
Alw26I	GTCTC	2 cut(s)	721, 761
AlwI	GGATC	2 cut(s)	336, 349
Aor51HI	AGCGCT	1 cut(s)	501
AoxI	GGCC	4 cut(s)	143, 304, 514, 779
ApeKI	GCWGC	2 cut(s)	179, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	352, 384
AsiGI	ACCGGT	1 cut(s)	79
AspLEI	GCGC	2 cut(s)	502, 830
AspS9I	GGNCC	2 cut(s)	143, 690
AsuHPI	GGTGA	1 cut(s)	649
AvaII	GGWCC	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	341
BanII	GRGCYC	2 cut(s)	441, 653
Bbv12I	GWGCWC	3 cut(s)	45, 441, 839
BbvI	GCAGC	2 cut(s)	166, 509
BccI	CCATC	2 cut(s)	419, 701
BciT130I	CCWGG	1 cut(s)	624
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	721, 761
BfaI	CTAG	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	503
BfrI	CTTAAG	1 cut(s)	347
BisI	GCNGC	3 cut(s)	180, 498, 517
BlsI	GCNGC	3 cut(s)	181, 499, 518
Bme1390I	CCNGG	1 cut(s)	624
Bme18I	GGWCC	1 cut(s)	690
BmgT120I	GGNCC	2 cut(s)	143, 690
BmiI	GGNNCC	2 cut(s)	144, 343
BmrFI	CCNGG	1 cut(s)	624
BmsI	GCATC	2 cut(s)	19, 33
BpuEI	CTTGAG	1 cut(s)	703
BsaJI	CCNNGG	3 cut(s)	622, 623, 823
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	4 cut(s)	377, 407, 649, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 251
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	392, 782
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	3 cut(s)	622, 623, 823
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	2 cut(s)	250, 251
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	392, 782
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	166, 509
BshFI	GGCC	4 cut(s)	145, 306, 516, 781
BshTI	ACCGGT	1 cut(s)	79
BsiHKAI	GWGCWC	3 cut(s)	45, 441, 839
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	250, 251
BsmAI	GTCTC	2 cut(s)	721, 761
BsmBI	CGTCTC	1 cut(s)	761
BsmFI	GGGAC	1 cut(s)	373
BsmI	GAATGC	2 cut(s)	406, 778
BsnI	GGCC	4 cut(s)	145, 306, 516, 781
Bsp1286I	GDGCHC	4 cut(s)	45, 441, 653, 839
Bsp143I	GATC	4 cut(s)	341, 483, 568, 724
BspACI	CCGC	4 cut(s)	8, 135, 267, 517
BspANI	GGCC	4 cut(s)	145, 306, 516, 781
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	144, 343
BspPI	GGATC	2 cut(s)	336, 349
BspTI	CTTAAG	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	392, 782
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	622, 623, 823
BssMI	GATC	4 cut(s)	341, 483, 568, 724
BssT1I	CCWWGG	1 cut(s)	823
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	3 cut(s)	292, 661, 715
Bst6I	CTCTTC	1 cut(s)	573
BstAFI	CTTAAG	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	200, 257
BstDEI	CTNAG	3 cut(s)	363, 455, 537
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	2 cut(s)	502, 830
BstKTI	GATC	4 cut(s)	344, 486, 571, 727
BstMAI	GTCTC	2 cut(s)	721, 761
BstMBI	GATC	4 cut(s)	341, 483, 568, 724
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 678, 834
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	622
BstV1I	GCAGC	2 cut(s)	166, 509
BstX2I	RGATCY	1 cut(s)	341
BstXI	CCANNNNNNTGG	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	341
BsuRI	GGCC	4 cut(s)	145, 306, 516, 781
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	2 cut(s)	84, 158
BtsIMutI	CAGTG	4 cut(s)	84, 158, 288, 385
Cac8I	GCNNGC	2 cut(s)	200, 257
CfoI	GCGC	2 cut(s)	502, 830
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	143, 690
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	785
CspAI	ACCGGT	1 cut(s)	79
CviAII	CATG	8 cut(s)	199, 308, 433, 445, 562, 646, 755, 812
CviQI	GTAC	1 cut(s)	785
DdeI	CTNAG	3 cut(s)	363, 455, 537
DpnI	GATC	4 cut(s)	343, 485, 570, 726
DpnII	GATC	4 cut(s)	341, 483, 568, 724
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Ecl136II	GAGCTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	823
Eco24I	GRGCYC	2 cut(s)	441, 653
Eco47I	GGWCC	1 cut(s)	690
Eco47III	AGCGCT	1 cut(s)	501
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	823
EcoT38I	GRGCYC	2 cut(s)	441, 653
ErhI	CCWWGG	1 cut(s)	823
Esp3I	CGTCTC	1 cut(s)	761
FaeI	CATG	8 cut(s)	202, 311, 436, 448, 565, 649, 758, 815
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	8 cut(s)	198, 307, 432, 444, 561, 645, 754, 811
FauI	CCCGC	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	3 cut(s)	180, 498, 517
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	2 cut(s)	441, 653
Fsp4HI	GCNGC	3 cut(s)	180, 498, 517
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	2 cut(s)	501, 829
GluI	GCNGC	3 cut(s)	180, 498, 517
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	4 cut(s)	145, 306, 516, 781
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	2 cut(s)	502, 830
Hin1II	CATG	8 cut(s)	202, 311, 436, 448, 565, 649, 758, 815
Hin6I	GCGC	2 cut(s)	500, 828
HinP1I	GCGC	2 cut(s)	500, 828
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	2 cut(s)	231, 524
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	2 cut(s)	543, 817
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	3 cut(s)	295, 720, 803
Hpy8I	GTNNAC	2 cut(s)	543, 817
Hpy99I	CGWCG	2 cut(s)	338, 497
HpyAV	CCTTC	7 cut(s)	133, 288, 408, 414, 538, 671, 809
HpyCH4III	ACNGT	3 cut(s)	292, 661, 715
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	5 cut(s)	202, 672, 754, 764, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 678, 834
HpyF3I	CTNAG	3 cut(s)	363, 455, 537
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	8 cut(s)	202, 311, 436, 448, 565, 649, 758, 815
HspAI	GCGC	2 cut(s)	500, 828
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	4 cut(s)	341, 483, 568, 724
LmnI	GCTCC	4 cut(s)	48, 436, 444, 834
LpnPI	CCDG	9 cut(s)	93, 113, 239, 324, 373, 534, 609, 636, 795
Lsp1109I	GCAGC	2 cut(s)	166, 509
LweI	GCATC	2 cut(s)	19, 33
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	2 cut(s)	82, 472
MalI	GATC	4 cut(s)	343, 485, 570, 726
MboI	GATC	4 cut(s)	341, 483, 568, 724
MboII	GAAGA	4 cut(s)	27, 116, 178, 590
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	4 cut(s)	45, 441, 653, 839
MluCI	AATT	3 cut(s)	597, 612, 844
MlyI	GAGTC	1 cut(s)	240
MnlI	CCTC	7 cut(s)	56, 94, 188, 296, 417, 542, 675
MseI	TTAA	2 cut(s)	348, 615
MslI	CAYNNNNRTG	1 cut(s)	759
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	624
Mva1269I	GAATGC	2 cut(s)	406, 778
MvaI	CCWGG	1 cut(s)	624
MwoI	GCNNNNNNNGC	3 cut(s)	494, 678, 834
NdeII	GATC	4 cut(s)	341, 483, 568, 724
NlaIII	CATG	8 cut(s)	202, 311, 436, 448, 565, 649, 758, 815
NlaIV	GGNNCC	2 cut(s)	144, 343
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	202
PaeI	GCATGC	1 cut(s)	202
PasI	CCCWGGG	1 cut(s)	623
PctI	GAATGC	2 cut(s)	406, 778
PfeI	GAWTC	1 cut(s)	524
PinAI	ACCGGT	1 cut(s)	79
PkrI	GCNGC	3 cut(s)	181, 499, 518
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	441
Psp1406I	AACGTT	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	2 cut(s)	144, 343
PspPI	GGNCC	2 cut(s)	143, 690
PsuI	RGATCY	1 cut(s)	341
RsaI	GTAC	1 cut(s)	786
RsaNI	GTAC	1 cut(s)	785
RseI	CAYNNNNRTG	1 cut(s)	759
SacI	GAGCTC	1 cut(s)	441
SaqAI	TTAA	2 cut(s)	348, 615
SatI	GCNGC	3 cut(s)	180, 498, 517
Sau3AI	GATC	4 cut(s)	341, 483, 568, 724
Sau96I	GGNCC	2 cut(s)	143, 690
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	4 cut(s)	45, 441, 653, 839
SetI	ASST	8 cut(s)	240, 261, 428, 441, 474, 635, 738, 801
SfaNI	GCATC	2 cut(s)	19, 33
SinI	GGWCC	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	2 cut(s)	347, 718
SmoI	CTYRAG	2 cut(s)	347, 718
SphI	GCATGC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	597, 612, 844
SsiI	CCGC	4 cut(s)	8, 135, 267, 517
SspI	AATATT	1 cut(s)	71
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	622
StyI	CCWWGG	1 cut(s)	823
TaaI	ACNGT	3 cut(s)	292, 661, 715
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	4 cut(s)	117, 317, 742, 802
TasI	AATT	3 cut(s)	597, 612, 844
TatI	WGTACW	1 cut(s)	784
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	2 cut(s)	348, 615
Tru9I	TTAA	2 cut(s)	348, 615
TscAI	CASTG	4 cut(s)	91, 158, 295, 392
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	179, 497
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	4 cut(s)	17, 120, 179, 440
TspRI	CASTG	4 cut(s)	91, 158, 295, 392
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	690
XceI	RCATGY	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	816
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.