Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003273

Physical Location & Seq

Genomic Coordinates Reverse (-)

53025842 .. 53027772

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG332300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGATGCAGAGGATGAGAGAGAGTTCGATTACGTTGAGGGAAGTGAAAAGGGGCCAAATCATTGGGGACAAATGAAGAAAGAATGGGCAGCCTGCAACAATGGAGGCATGCAATCTCCCATCGATCTTTCAAACAAGAGAGTGAAGATAATACCCAAGTTGGGGAAGCTAAAAAAGAGTTACAGACCTAGTAATGCCACCGTCAAGAATAGAGGGCACGACATTTCGCTTCAATGGGAGGGCGACGCAGGATCAGTTCGGATCAACGGAACTGACTACTTGCTTAAACAATGTCACTGGCATTCGCCGTCTGAGCACTCCATCAACGGCAGGAGGTATGACATGGAGCTCCATATGGTCCATCTCAGCCCCGATCCCAATGTGACAAACAAGATTGCTGTCGTCGGAGTCCTTTACAAGTTTGGTCGCCACCCTGATTCTTTCCTCTCTAAGTTGAGGAGGCATGTAAGATCCATGACTGATCGAAAGGAACAGAGAAACATAGGGAAGATTGATCCAAGAGAAATCAAAATGGGTGGCAACAACTACTATAGATATATGGGCTCACTAACTGTTCCTCCATGTACTGAAGGTGTCATTTGGACAATCCATAAGCAGATTTTAGTTTGGCAGGCTAGCGACCACAGCAAAGTGATTCTAAATATCTCAAATTGTCTGCAGATAAGAAGTGTCTCGAGGGAACAAGTAAAACTATTTCGTTCGGCTGTGCACGATGTAAGTGGTTCTGTCAACTCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

253

Amino Acids

28.92

Weight (kDa)

9.51

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	17 - 211	1.6e-38	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02430 FvH4_6g16680 FvH4_6g16682 FvH4_6g16682 FvH4_6g16682 FvH4_6g16690
malus_domestica	MD00G1067900.v1.1 MD03G1165000.v1.1
prunus_persica	Prupe.4G263400_v2.0.a1 Prupe.4G263500_v2.0.a1 Prupe.4G264600_v2.0.a1 Prupe.7G126600_v2.0.a1
pyrus_communis	pycom03g11960 pycom12g08900
rosa_chinensis	RchiOBHm_Chr3g0470641 RchiOBHm_Chr5g0050381
rosa_laevigata	RLG00000024251 RLG00000034701
rosa_multiflora	Rmu_co8293285.1_g000001 Rmu_co8361179.1_g000001 Rmu_sc0002115.1_g000025 Rmu_sc0005060.1_g000019 Rmu_sc0030351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030530 Rroxscaffold_6G00410640
rosa_rugosa	Rorug03G0111200 Rorug05G0260900
rosa_samantha	Rh3AG160900 Rh3BG185500 Rh3CG175800 Rh3DG189300 Rh5AG332300 Rh5BG342600 Rh5CG369800 Rh5DG355400
rosa_wichuraiana	Rw3G015220 Rw5G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	259, 269, 368, 465, 509
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	2 cut(s)	161, 162
AgsI	TTSAA	2 cut(s)	132, 233
AluBI	AGCT	2 cut(s)	169, 349
AluI	AGCT	2 cut(s)	169, 349
Alw21I	GWGCWC	3 cut(s)	318, 351, 732
Alw26I	GTCTC	1 cut(s)	697
Alw44I	GTGCAC	1 cut(s)	728
AlwI	GGATC	5 cut(s)	259, 269, 368, 465, 509
Ama87I	CYCGRG	1 cut(s)	694
AoxI	GGCC	1 cut(s)	53
ApaLI	GTGCAC	1 cut(s)	728
ApeKI	GCWGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	53, 358
AsuNHI	GCTAGC	1 cut(s)	635
AvaI	CYCGRG	1 cut(s)	694
AvaII	GGWCC	1 cut(s)	358
BaeGI	GKGCMC	2 cut(s)	219, 732
BanII	GRGCYC	2 cut(s)	351, 566
Bbv12I	GWGCWC	3 cut(s)	318, 351, 732
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	3 cut(s)	128, 329, 369
BceAI	ACGGC	2 cut(s)	292, 343
BcoDI	GTCTC	1 cut(s)	697
BfaI	CTAG	2 cut(s)	189, 636
BfmI	CTRYAG	2 cut(s)	550, 677
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	694
BmgT120I	GGNCC	2 cut(s)	53, 358
BmiI	GGNNCC	1 cut(s)	54
BmtI	GCTAGC	1 cut(s)	639
Bsa29I	ATCGAT	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 162
Bse1I	ACTGG	1 cut(s)	302
BseCI	ATCGAT	1 cut(s)	123
BseGI	GGATG	2 cut(s)	10, 19
BseLI	CCNNNNNNNGG	2 cut(s)	161, 162
BseMII	CTCAG	2 cut(s)	303, 379
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	472
BseSI	GKGCMC	2 cut(s)	219, 732
BseXI	GCAGC	1 cut(s)	101
BshFI	GGCC	1 cut(s)	55
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	3 cut(s)	318, 351, 732
BsiHKCI	CYCGRG	1 cut(s)	694
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	161, 162
BsmAI	GTCTC	1 cut(s)	697
BsmFI	GGGAC	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	694
Bsp1286I	GDGCHC	5 cut(s)	219, 318, 351, 566, 732
Bsp143I	GATC	7 cut(s)	124, 251, 261, 373, 470, 481, 514
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	304, 378
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	681
BspOI	GCTAGC	1 cut(s)	639
BspPI	GGATC	5 cut(s)	259, 269, 368, 465, 509
BsrI	ACTGG	1 cut(s)	302
BssMI	GATC	7 cut(s)	124, 251, 261, 373, 470, 481, 514
Bst4CI	ACNGT	2 cut(s)	202, 574
BstC8I	GCNNGC	4 cut(s)	94, 110, 633, 637
BstDEI	CTNAG	3 cut(s)	312, 365, 450
BstF5I	GGATG	2 cut(s)	10, 19
BstKTI	GATC	7 cut(s)	127, 254, 264, 376, 473, 484, 517
BstMAI	GTCTC	1 cut(s)	697
BstMBI	GATC	7 cut(s)	124, 251, 261, 373, 470, 481, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 645
BstNSI	RCATGY	2 cut(s)	112, 467
BstSFI	CTRYAG	2 cut(s)	550, 677
BstSLI	GKGCMC	2 cut(s)	219, 732
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	470
BstXI	CCANNNNNNTGG	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	470
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	55
BsuTUI	ATCGAT	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	10, 19
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	4 cut(s)	94, 110, 633, 637
Cfr13I	GGNCC	2 cut(s)	53, 358
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	585
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	5 cut(s)	109, 343, 464, 475, 582
CviJI	RGCY	8 cut(s)	55, 92, 169, 349, 369, 564, 635, 725
CviKI_1	RGCY	8 cut(s)	55, 92, 169, 349, 369, 564, 635, 725
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	3 cut(s)	312, 365, 450
DpnI	GATC	7 cut(s)	126, 253, 263, 375, 472, 483, 516
DpnII	GATC	7 cut(s)	124, 251, 261, 373, 470, 481, 514
Ecl136II	GAGCTC	1 cut(s)	349
Eco24I	GRGCYC	2 cut(s)	351, 566
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	694
EcoICRI	GAGCTC	1 cut(s)	349
EcoT38I	GRGCYC	2 cut(s)	351, 566
FaeI	CATG	5 cut(s)	112, 346, 467, 478, 585
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	5 cut(s)	108, 342, 463, 474, 581
FauNDI	CATATG	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	17, 26
FriOI	GRGCYC	2 cut(s)	351, 566
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	189, 636
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	55
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	5 cut(s)	112, 346, 467, 478, 585
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	3 cut(s)	408, 437, 655
Hpy166II	GTNNAC	2 cut(s)	730, 751
Hpy188I	TCNGA	3 cut(s)	261, 313, 407
Hpy188III	TCNNGA	2 cut(s)	205, 694
Hpy8I	GTNNAC	2 cut(s)	730, 751
Hpy99I	CGWCG	2 cut(s)	248, 407
HpyAV	CCTTC	1 cut(s)	584
HpyCH4III	ACNGT	2 cut(s)	202, 574
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	5 cut(s)	8, 96, 112, 679, 730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 645
HpyF3I	CTNAG	3 cut(s)	312, 365, 450
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	112, 346, 467, 478, 585
Kzo9I	GATC	7 cut(s)	124, 251, 261, 373, 470, 481, 514
LmnI	GCTCC	2 cut(s)	346, 354
LpnPI	CCDG	6 cut(s)	106, 234, 283, 316, 447, 617
Lsp1109I	GCAGC	1 cut(s)	101
MaeI	CTAG	2 cut(s)	189, 636
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	3 cut(s)	179, 293, 382
MalI	GATC	7 cut(s)	126, 253, 263, 375, 472, 483, 516
MboI	GATC	7 cut(s)	124, 251, 261, 373, 470, 481, 514
MboII	GAAGA	3 cut(s)	88, 157, 520
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	5 cut(s)	219, 318, 351, 566, 732
MluCI	AATT	1 cut(s)	670
MlyI	GAGTC	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	385
MseI	TTAA	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	313, 645
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	7 cut(s)	124, 251, 261, 373, 470, 481, 514
NheI	GCTAGC	1 cut(s)	635
NlaIII	CATG	5 cut(s)	112, 346, 467, 478, 585
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	293, 382
NspI	RCATGY	2 cut(s)	112, 467
PaeI	GCATGC	1 cut(s)	112
PaeR7I	CTCGAG	1 cut(s)	694
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	437, 655
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	53, 358
PstI	CTGCAG	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	7 cut(s)	124, 251, 261, 373, 470, 481, 514
Sau96I	GGNCC	2 cut(s)	53, 358
SchI	GAGTC	1 cut(s)	417
SduI	GDGCHC	5 cut(s)	219, 318, 351, 566, 732
SetI	ASST	6 cut(s)	36, 171, 190, 338, 351, 595
SfcI	CTRYAG	2 cut(s)	550, 677
Sfr274I	CTCGAG	1 cut(s)	694
SinI	GGWCC	1 cut(s)	358
SlaI	CTCGAG	1 cut(s)	694
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
SphI	GCATGC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	670
SspMI	CTAG	2 cut(s)	189, 636
SstI	GAGCTC	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	202, 574
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	4 cut(s)	27, 123, 484, 695
TasI	AATT	1 cut(s)	670
TatI	WGTACW	1 cut(s)	584
TfiI	GAWTC	2 cut(s)	437, 655
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	2 cut(s)	293, 382
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	2 cut(s)	293, 382
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	302
VneI	GTGCAC	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	358
XceI	RCATGY	2 cut(s)	112, 467
XhoI	CTCGAG	1 cut(s)	694
XspI	CTAG	2 cut(s)	189, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.