Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030351.1

Orthogroup ID

OG0003273

Physical Location & Seq

Genomic Coordinates Reverse (-)

120 .. 746

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030351.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgaagcatcgcgtctgcaatgttagttgctggtttcttttccttgtagttctatcagtcgtcacagctcaagaagttgaggatgagagagagttcgattacgttgagggaagtgaaaaggggccaaatcattggggacaaatgaagaaagaatgggcagcctgcaacaatggaggcatgcaatctcccatcgatctttcaaacaagagagtgaagataatacccaagttggggaagctaaaaaagagttacagacctagtaatgccaccgtcaagaatagagggcacgacatttcgcttcaatgggagggcgacgcaggatcagttcggatcaacggaactgactacttgcttaaacaatgtcactggcattcgccatctgagcactccatcaacggcaggaggtatgacatggagctccatatggtccatctcagccccgatcccaatgtgacaaacaagattgctgtcgtcggagtcctttacaagtttggtcgccaccctgattctttcctctcaaaggtaggtctgcaatgcatgtgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

181

Amino Acids

20.59

Weight (kDa)

8.88

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02430 FvH4_6g16680 FvH4_6g16682 FvH4_6g16682 FvH4_6g16682 FvH4_6g16690
malus_domestica	MD00G1067900.v1.1 MD03G1165000.v1.1
prunus_persica	Prupe.4G263400_v2.0.a1 Prupe.4G263500_v2.0.a1 Prupe.4G264600_v2.0.a1 Prupe.7G126600_v2.0.a1
pyrus_communis	pycom03g11960 pycom12g08900
rosa_chinensis	RchiOBHm_Chr3g0470641 RchiOBHm_Chr5g0050381
rosa_laevigata	RLG00000024251 RLG00000034701
rosa_multiflora	Rmu_co8293285.1_g000001 Rmu_co8361179.1_g000001 Rmu_sc0002115.1_g000025 Rmu_sc0005060.1_g000019 Rmu_sc0030351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030530 Rroxscaffold_6G00410640
rosa_rugosa	Rorug03G0111200 Rorug05G0260900
rosa_samantha	Rh3AG160900 Rh3BG185500 Rh3CG175800 Rh3DG189300 Rh5AG332300 Rh5BG342600 Rh5CG369800 Rh5DG355400
rosa_wichuraiana	Rw3G015220 Rw5G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	12
AclWI	GGATC	3 cut(s)	328, 338, 437
AfiI	CCNNNNNNNGG	3 cut(s)	230, 231, 520
AgsI	TTSAA	2 cut(s)	201, 302
AluBI	AGCT	3 cut(s)	68, 238, 418
AluI	AGCT	3 cut(s)	68, 238, 418
Alw21I	GWGCWC	2 cut(s)	387, 420
AlwI	GGATC	3 cut(s)	328, 338, 437
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	122, 427
AvaII	GGWCC	1 cut(s)	427
BaeGI	GKGCMC	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	387, 420
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	4 cut(s)	197, 385, 398, 438
BceAI	ACGGC	1 cut(s)	412
BfaI	CTAG	1 cut(s)	258
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	2 cut(s)	122, 427
BmiI	GGNNCC	1 cut(s)	123
BmsI	GCATC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	54
Bsa29I	ATCGAT	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 231, 520
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	2 cut(s)	25, 539
BseCI	ATCGAT	1 cut(s)	192
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	3 cut(s)	230, 231, 520
BseMI	GCAATG	2 cut(s)	25, 539
BseMII	CTCAG	2 cut(s)	372, 448
BseNI	ACTGG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	387, 420
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	3 cut(s)	230, 231, 520
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	124
Bsp1286I	GDGCHC	3 cut(s)	288, 387, 420
Bsp143I	GATC	4 cut(s)	193, 320, 330, 442
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	2 cut(s)	373, 447
BspDI	ATCGAT	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	123
BspPI	GGATC	3 cut(s)	328, 338, 437
BsrDI	GCAATG	2 cut(s)	25, 539
BsrI	ACTGG	1 cut(s)	371
BssMI	GATC	4 cut(s)	193, 320, 330, 442
Bst4CI	ACNGT	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	163, 179
BstDEI	CTNAG	2 cut(s)	381, 434
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	4 cut(s)	196, 323, 333, 445
BstMBI	GATC	4 cut(s)	193, 320, 330, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNSI	RCATGY	2 cut(s)	181, 541
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	132
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	124
BsuTUI	ATCGAT	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	163, 179
Cfr13I	GGNCC	2 cut(s)	122, 427
ClaI	ATCGAT	1 cut(s)	192
CseI	GACGC	1 cut(s)	323
CviAII	CATG	3 cut(s)	178, 412, 538
CviJI	RGCY	6 cut(s)	68, 124, 161, 238, 418, 438
CviKI_1	RGCY	6 cut(s)	68, 124, 161, 238, 418, 438
DdeI	CTNAG	2 cut(s)	381, 434
DpnI	GATC	4 cut(s)	195, 322, 332, 444
DpnII	GATC	4 cut(s)	193, 320, 330, 442
Ecl136II	GAGCTC	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	418
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoT22I	ATGCAT	1 cut(s)	539
EcoT38I	GRGCYC	1 cut(s)	420
FaeI	CATG	3 cut(s)	181, 415, 541
FaiI	YATR	6 cut(s)	179, 408, 413, 423, 425, 539
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	3 cut(s)	177, 411, 537
FauNDI	CATATG	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	124
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	3 cut(s)	181, 415, 541
HinfI	GANTC	2 cut(s)	477, 506
Hpy188I	TCNGA	3 cut(s)	330, 382, 476
Hpy188III	TCNNGA	2 cut(s)	71, 274
Hpy99I	CGWCG	2 cut(s)	317, 476
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	5 cut(s)	18, 165, 181, 532, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	2 cut(s)	381, 434
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	181, 415, 541
Kzo9I	GATC	4 cut(s)	193, 320, 330, 442
LmnI	GCTCC	2 cut(s)	415, 423
LpnPI	CCDG	6 cut(s)	16, 175, 303, 352, 385, 516
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	4 cut(s)	61, 248, 362, 451
MalI	GATC	4 cut(s)	195, 322, 332, 444
MboI	GATC	4 cut(s)	193, 320, 330, 442
MboII	GAAGA	2 cut(s)	157, 226
MhlI	GDGCHC	3 cut(s)	288, 387, 420
MlyI	GAGTC	1 cut(s)	486
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	7 cut(s)	73, 100, 167, 275, 301, 396, 524
Mph1103I	ATGCAT	1 cut(s)	539
MseI	TTAA	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	370
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	382
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	4 cut(s)	193, 320, 330, 442
NlaIII	CATG	3 cut(s)	181, 415, 541
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	3 cut(s)	61, 362, 451
NsiI	ATGCAT	1 cut(s)	539
NspI	RCATGY	2 cut(s)	181, 541
PaeI	GCATGC	1 cut(s)	181
PctI	GAATGC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
Psp124BI	GAGCTC	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	122, 427
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	4 cut(s)	193, 320, 330, 442
Sau96I	GGNCC	2 cut(s)	122, 427
SchI	GAGTC	1 cut(s)	486
SduI	GDGCHC	3 cut(s)	288, 387, 420
SetI	ASST	8 cut(s)	70, 105, 240, 259, 407, 420, 525, 529
SfaNI	GCATC	1 cut(s)	16
SinI	GGWCC	1 cut(s)	427
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
SphI	GCATGC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	258
SstI	GAGCTC	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	96, 192
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	371
TseFI	GTSAC	3 cut(s)	61, 362, 451
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	3 cut(s)	61, 362, 451
TspDTI	ATGAA	2 cut(s)	17, 158
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	427
XagI	CCTNNNNNAGG	1 cut(s)	518
XceI	RCATGY	2 cut(s)	181, 541
XspI	CTAG	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.