Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002115.1

Orthogroup ID

OG0003273

Physical Location & Seq

Genomic Coordinates Forward (+)

143683 .. 144974

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002115.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgatgatggatcagagcaagtccatctccacttctttatttatgcttcttcttcttctccttcaaattttgcactcaacacgcattacagctcaagaagttgaagaagaaagagagtttgattatctgaaagacagtgagaagggaccaaagtattggggagagcttagggaagaatgggcagcatgtaaacatgggacactgcaatctccggtagatttgctgagtgagaatgtgcaagtacgcctaaacaaaggggaggtgagactcaagtacaagcctgcaaatgcaacaatcagaaatagaggccatgacatttcggtccagtggaatctaggtgatgctggatccgtagagattaatggcacagattacttactacaacaatgccactggcactcaccatccgagcatacaattgatggtataagatttgacatggagcttcatatggtacacctaatccctgaggcaaatgtcgaaaacaacatagttgtggttacatacctctacaaacttggcaagcctgataagtttctgtcggaggtaagcaaggatatccatgccatgattgatgaagaggaagagagacacagaggggtggttgatccaagagatgtgaagaagggtggcaaaaaattttacaagtacataggctcactcactgtacctccttgcactgaaggagtaacttggatcatccacaaaaaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

238

Amino Acids

27.4

Weight (kDa)

6.0

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02430 FvH4_6g16680 FvH4_6g16682 FvH4_6g16682 FvH4_6g16682 FvH4_6g16690
malus_domestica	MD00G1067900.v1.1 MD03G1165000.v1.1
prunus_persica	Prupe.4G263400_v2.0.a1 Prupe.4G263500_v2.0.a1 Prupe.4G264600_v2.0.a1 Prupe.7G126600_v2.0.a1
pyrus_communis	pycom03g11960 pycom12g08900
rosa_chinensis	RchiOBHm_Chr3g0470641 RchiOBHm_Chr5g0050381
rosa_laevigata	RLG00000024251 RLG00000034701
rosa_multiflora	Rmu_co8293285.1_g000001 Rmu_co8361179.1_g000001 Rmu_sc0002115.1_g000025 Rmu_sc0005060.1_g000019 Rmu_sc0030351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030530 Rroxscaffold_6G00410640
rosa_rugosa	Rorug03G0111200 Rorug05G0260900
rosa_samantha	Rh3AG160900 Rh3BG185500 Rh3CG175800 Rh3DG189300 Rh5AG332300 Rh5BG342600 Rh5CG369800 Rh5DG355400
rosa_wichuraiana	Rw3G015220 Rw5G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AclWI	GGATC	5 cut(s)	18, 342, 355, 602, 704
AcsI	RAATTY	2 cut(s)	66, 638
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	5 cut(s)	243, 275, 456, 650, 669
AfiI	CCNNNNNNNGG	1 cut(s)	709
AgsI	TTSAA	2 cut(s)	65, 104
AluBI	AGCT	3 cut(s)	92, 166, 445
AluI	AGCT	3 cut(s)	92, 166, 445
Alw26I	GTCTC	2 cut(s)	259, 583
AlwI	GGATC	5 cut(s)	18, 342, 355, 602, 704
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	2 cut(s)	66, 638
AseI	ATTAAT	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	146, 322
AsuHPI	GGTGA	3 cut(s)	274, 350, 393
AvaII	GGWCC	2 cut(s)	146, 322
AxyI	CCTNAGG	1 cut(s)	468
BamHI	GGATCC	1 cut(s)	347
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	32, 412, 416
BcoDI	GTCTC	2 cut(s)	259, 583
BfaI	CTAG	1 cut(s)	335
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme18I	GGWCC	2 cut(s)	146, 322
BmgT120I	GGNCC	2 cut(s)	146, 322
BmiI	GGNNCC	2 cut(s)	147, 349
BmsI	GCATC	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	2 cut(s)	78, 254
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse1I	ACTGG	2 cut(s)	325, 398
Bse21I	CCTNAGG	1 cut(s)	468
BseGI	GGATG	2 cut(s)	404, 699
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	2 cut(s)	215, 459
BseNI	ACTGG	2 cut(s)	325, 398
BseXI	GCAGC	1 cut(s)	194
BshFI	GGCC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	2 cut(s)	159, 211
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	2 cut(s)	259, 583
BsmFI	GGGAC	2 cut(s)	159, 211
BsnI	GGCC	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	10, 347, 607, 696
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	2 cut(s)	216, 460
BspLI	GGNNCC	2 cut(s)	147, 349
BspPI	GGATC	5 cut(s)	18, 342, 355, 602, 704
BsrI	ACTGG	2 cut(s)	325, 398
BssMI	GATC	4 cut(s)	10, 347, 607, 696
Bst4CI	ACNGT	2 cut(s)	137, 667
Bst6I	CTCTTC	2 cut(s)	573, 579
BstC8I	GCNNGC	2 cut(s)	282, 524
BstDEI	CTNAG	3 cut(s)	167, 224, 468
BstF5I	GGATG	2 cut(s)	404, 699
BstKTI	GATC	4 cut(s)	13, 350, 610, 699
BstMAI	GTCTC	2 cut(s)	259, 583
BstMBI	GATC	4 cut(s)	10, 347, 607, 696
BstNSI	RCATGY	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	347
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	347
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	404, 699
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	6 cut(s)	142, 200, 332, 391, 663, 678
Cac8I	GCNNGC	2 cut(s)	282, 524
Cfr13I	GGNCC	2 cut(s)	146, 322
Csp6I	GTAC	5 cut(s)	242, 274, 455, 649, 668
CviAII	CATG	6 cut(s)	186, 194, 311, 439, 563, 568
CviJI	RGCY	7 cut(s)	92, 166, 280, 309, 445, 526, 657
CviKI_1	RGCY	7 cut(s)	92, 166, 280, 309, 445, 526, 657
CviQI	GTAC	5 cut(s)	242, 274, 455, 649, 668
DdeI	CTNAG	3 cut(s)	167, 224, 468
DpnI	GATC	4 cut(s)	12, 349, 609, 698
DpnII	GATC	4 cut(s)	10, 347, 607, 696
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eam1104I	CTCTTC	2 cut(s)	573, 579
EarI	CTCTTC	2 cut(s)	573, 579
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	2 cut(s)	146, 322
Eco57I	CTGAAG	1 cut(s)	702
Eco81I	CCTNAGG	1 cut(s)	468
EcoRV	GATATC	1 cut(s)	559
FaeI	CATG	6 cut(s)	189, 197, 314, 442, 566, 571
FaqI	GGGAC	2 cut(s)	159, 211
FatI	CATG	6 cut(s)	185, 193, 310, 438, 562, 567
FauNDI	CATATG	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	391, 686
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	6 cut(s)	189, 197, 314, 442, 566, 571
HinfI	GANTC	2 cut(s)	267, 331
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	3 cut(s)	274, 350, 393
Hpy166II	GTNNAC	2 cut(s)	191, 457
Hpy188I	TCNGA	5 cut(s)	15, 129, 299, 409, 544
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	2 cut(s)	191, 457
HpyAV	CCTTC	4 cut(s)	71, 136, 619, 677
HpyCH4III	ACNGT	2 cut(s)	137, 667
HpyCH4V	TGCA	6 cut(s)	73, 205, 238, 284, 290, 678
HpyF3I	CTNAG	3 cut(s)	167, 224, 468
Hsp92II	CATG	6 cut(s)	189, 197, 314, 442, 566, 571
Kzo9I	GATC	4 cut(s)	10, 347, 607, 696
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	7 cut(s)	225, 294, 330, 338, 379, 480, 540
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	2 cut(s)	499, 688
MalI	GATC	4 cut(s)	12, 349, 609, 698
MboI	GATC	4 cut(s)	10, 347, 607, 696
MboII	GAAGA	9 cut(s)	41, 44, 47, 116, 119, 185, 590, 596, 634
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	3 cut(s)	66, 417, 638
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	8 cut(s)	253, 299, 463, 518, 538, 574, 590, 681
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	1 cut(s)	212
MunI	CAATTG	1 cut(s)	417
NdeI	CATATG	1 cut(s)	450
NdeII	GATC	4 cut(s)	10, 347, 607, 696
NlaIII	CATG	6 cut(s)	189, 197, 314, 442, 566, 571
NlaIV	GGNNCC	2 cut(s)	147, 349
NspI	RCATGY	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	147, 349
PspPI	GGNCC	2 cut(s)	146, 322
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	5 cut(s)	243, 275, 456, 650, 669
RsaNI	GTAC	5 cut(s)	242, 274, 455, 649, 668
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	4 cut(s)	10, 347, 607, 696
Sau96I	GGNCC	2 cut(s)	146, 322
SchI	GAGTC	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	2 cut(s)	146, 322
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	93, 269
SmoI	CTYRAG	2 cut(s)	93, 269
Sse9I	AATT	3 cut(s)	66, 417, 638
SspMI	CTAG	1 cut(s)	335
TaaI	ACNGT	2 cut(s)	137, 667
TaqI	TCGA	1 cut(s)	480
TaqII	GACCGA	1 cut(s)	310
TasI	AATT	3 cut(s)	66, 417, 638
TatI	WGTACW	2 cut(s)	273, 648
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	6 cut(s)	142, 207, 332, 398, 670, 685
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	437, 591
TspGWI	ACGGA	1 cut(s)	340
TspRI	CASTG	6 cut(s)	142, 207, 332, 398, 670, 685
VpaK11BI	GGWCC	2 cut(s)	146, 322
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	2 cut(s)	66, 638
XceI	RCATGY	1 cut(s)	189
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.