Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003273

Physical Location & Seq

Genomic Coordinates Reverse (-)

10594006 .. 10595942

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g08900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAATTATTTTTTCTTTATTGACATCCGAGTGCCGCGTTCATACGCGGGCGAGAAACACAGAAACAGAAGCCTCACCGGAAAGGGAAGAGGTTTACTGCAATTACCACTTATCTCTGATCCGCTCTTTGATACAAACATAAACATGAAGAAGTCGCATCAAAGCCAACCCATATACATTTTCTGTTTAGTATTCTTTTTATGTTCCGCAACATCGATCACAGCTCAAGAAGTTGAAGATGAACGAGAGTTCGATTATCTTCAGGGAAGTGGAAAGGGACCGAAGCAGTGGGGAGCGATGAAGAAAGAATGGTCAGCCTGCAAGAATGGAGGCATGCAATCTCCTATTGATTTATCGAGTCACAGGGTCACGTTAGTCCCAAACTTGGGCAAGCTCAACATCTCTTACAATCCTTGTAATGCCACCGTAAAGAATAGAGGCCACGATATTTCGATTTACTGGGAGGGCAACGCTGGATCAATTCACATAAATGGTACTCAGTATTTGCTAAAACAATCTCACTGGCACTCCCCTTCCGAGCATTCCGTCAATGGCAGGAGGTACGACATGGAGCTCCACATGGTTCATCTAAGCTCCGATCCCAAAGTCACAAACAAGATCGCTGTTGTTGGCGTCCTATACAAGATTGGTCGCCCTGACTCTTTCCTTTCTAAGTTGACAGGGCATGTAAAGTCAATGATGGATCAGATGGAAGAGAGAAACACAGGGACAATTGATCCCCGAGAAATTAAAATCCATAAGAAAAACTATTACAGATACATGGGCTCACTCACTGTTCCTCCTTGCACTGAAGGCGTTATTTGGACCATCAATAAAAAGATAAGAACAGTCTCAAGGGATCAAGTAAAGCTATTTCGAGTCGCTGTGCATGATTATGCAGAGATGAATGCAAGGCCAGTACAACCACTTAATCTTCGAGAGATCCAGGTCTTTGACAGAAGAAAAGGGAGCACAAATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

328

Amino Acids

37.42

Weight (kDa)

9.57

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02430 FvH4_6g16680 FvH4_6g16682 FvH4_6g16682 FvH4_6g16682 FvH4_6g16690
malus_domestica	MD00G1067900.v1.1 MD03G1165000.v1.1
prunus_persica	Prupe.4G263400_v2.0.a1 Prupe.4G263500_v2.0.a1 Prupe.4G264600_v2.0.a1 Prupe.7G126600_v2.0.a1
pyrus_communis	pycom03g11960 pycom12g08900
rosa_chinensis	RchiOBHm_Chr3g0470641 RchiOBHm_Chr5g0050381
rosa_laevigata	RLG00000024251 RLG00000034701
rosa_multiflora	Rmu_co8293285.1_g000001 Rmu_co8361179.1_g000001 Rmu_sc0002115.1_g000025 Rmu_sc0005060.1_g000019 Rmu_sc0030351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030530 Rroxscaffold_6G00410640
rosa_rugosa	Rorug03G0111200 Rorug05G0260900
rosa_samantha	Rh3AG160900 Rh3BG185500 Rh3CG175800 Rh3DG189300 Rh5AG332300 Rh5BG342600 Rh5CG369800 Rh5DG355400
rosa_wichuraiana	Rw3G015220 Rw5G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	124
AccII	CGCG	2 cut(s)	37, 47
AciI	CCGC	4 cut(s)	35, 47, 122, 207
AclWI	GGATC	7 cut(s)	113, 484, 593, 711, 731, 867, 937
AcuI	CTGAAG	2 cut(s)	245, 831
AcyI	GRCGYC	1 cut(s)	633
AfaI	GTAC	3 cut(s)	496, 563, 921
AfiI	CCNNNNNNNGG	2 cut(s)	385, 386
AgsI	TTSAA	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	945
AluBI	AGCT	5 cut(s)	224, 394, 574, 594, 871
AluI	AGCT	5 cut(s)	224, 394, 574, 594, 871
Alw21I	GWGCWC	2 cut(s)	576, 974
Alw26I	GTCTC	1 cut(s)	856
AlwI	GGATC	7 cut(s)	113, 484, 593, 711, 731, 867, 937
Ama87I	CYCGRG	1 cut(s)	741
AoxI	GGCC	2 cut(s)	439, 914
AspS9I	GGNCC	2 cut(s)	278, 825
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	741
AvaII	GGWCC	2 cut(s)	278, 825
BanII	GRGCYC	2 cut(s)	576, 788
Bbv12I	GWGCWC	2 cut(s)	576, 974
BccI	CCATC	3 cut(s)	694, 703, 836
BciT130I	CCWGG	1 cut(s)	947
BcoDI	GTCTC	1 cut(s)	856
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	947
Bme18I	GGWCC	2 cut(s)	278, 825
BmeT110I	CYCGRG	1 cut(s)	741
BmgT120I	GGNCC	2 cut(s)	278, 825
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	947
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	469
BpuEI	CTTGAG	2 cut(s)	210, 838
Bsa29I	ATCGAT	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	633
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	4 cut(s)	512, 542, 784, 814
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 386
Bse1I	ACTGG	3 cut(s)	464, 527, 917
BseBI	CCWGG	1 cut(s)	947
BseCI	ATCGAT	1 cut(s)	215
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	385, 386
BseMII	CTCAG	1 cut(s)	512
BseNI	ACTGG	3 cut(s)	464, 527, 917
Bsh1236I	CGCG	2 cut(s)	37, 47
BshFI	GGCC	2 cut(s)	441, 916
BshVI	ATCGAT	1 cut(s)	215
BsiHKAI	GWGCWC	2 cut(s)	576, 974
BsiHKCI	CYCGRG	1 cut(s)	741
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	3 cut(s)	291, 362, 742
BslI	CCNNNNNNNGG	2 cut(s)	385, 386
BsmAI	GTCTC	1 cut(s)	856
BsmFI	GGGAC	3 cut(s)	291, 362, 742
BsmI	GAATGC	2 cut(s)	541, 913
BsnI	GGCC	2 cut(s)	441, 916
BsoBI	CYCGRG	1 cut(s)	741
Bsp1286I	GDGCHC	3 cut(s)	576, 788, 974
Bsp143I	GATC	9 cut(s)	118, 216, 476, 598, 618, 703, 736, 859, 942
BspACI	CCGC	4 cut(s)	35, 47, 122, 207
BspANI	GGCC	2 cut(s)	441, 916
BspCNI	CTCAG	1 cut(s)	511
BspDI	ATCGAT	1 cut(s)	215
BspFNI	CGCG	2 cut(s)	37, 47
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	7 cut(s)	113, 484, 593, 711, 731, 867, 937
BsrBI	CCGCTC	1 cut(s)	124
BsrI	ACTGG	3 cut(s)	464, 527, 917
BssMI	GATC	9 cut(s)	118, 216, 476, 598, 618, 703, 736, 859, 942
BssNI	GRCGYC	1 cut(s)	633
Bst2UI	CCWGG	1 cut(s)	947
Bst4CI	ACNGT	3 cut(s)	427, 796, 850
Bst6I	CTCTTC	2 cut(s)	82, 708
BstACI	GRCGYC	1 cut(s)	633
BstC8I	GCNNGC	4 cut(s)	49, 319, 335, 392
BstDEI	CTNAG	3 cut(s)	498, 590, 672
BstF5I	GGATG	1 cut(s)	24
BstFNI	CGCG	2 cut(s)	37, 47
BstKTI	GATC	9 cut(s)	121, 219, 479, 601, 621, 706, 739, 862, 945
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	9 cut(s)	118, 216, 476, 598, 618, 703, 736, 859, 942
BstMWI	GCNNNNNNNGC	1 cut(s)	813
BstNI	CCWGG	1 cut(s)	947
BstNSI	RCATGY	2 cut(s)	337, 689
BstSCI	CCNGG	1 cut(s)	945
BstUI	CGCG	2 cut(s)	37, 47
BstX2I	RGATCY	1 cut(s)	942
BstYI	RGATCY	1 cut(s)	942
Bsu15I	ATCGAT	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	441, 916
BsuTUI	ATCGAT	1 cut(s)	215
BtgZI	GCGATG	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	24
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	4 cut(s)	293, 520, 792, 807
Cac8I	GCNNGC	4 cut(s)	49, 319, 335, 392
Cfr13I	GGNCC	2 cut(s)	278, 825
ClaI	ATCGAT	1 cut(s)	215
CseI	GACGC	1 cut(s)	622
Csp6I	GTAC	3 cut(s)	495, 562, 920
CviAII	CATG	7 cut(s)	145, 334, 568, 580, 686, 781, 890
CviQI	GTAC	3 cut(s)	495, 562, 920
DdeI	CTNAG	3 cut(s)	498, 590, 672
DpnI	GATC	9 cut(s)	120, 218, 478, 600, 620, 705, 738, 861, 944
DpnII	GATC	9 cut(s)	118, 216, 476, 598, 618, 703, 736, 859, 942
Eam1104I	CTCTTC	2 cut(s)	82, 708
EarI	CTCTTC	2 cut(s)	82, 708
Ecl136II	GAGCTC	1 cut(s)	574
Eco24I	GRGCYC	2 cut(s)	576, 788
Eco47I	GGWCC	2 cut(s)	278, 825
Eco53kI	GAGCTC	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	245, 831
Eco88I	CYCGRG	1 cut(s)	741
EcoICRI	GAGCTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	945
EcoT38I	GRGCYC	2 cut(s)	576, 788
FaeI	CATG	7 cut(s)	148, 337, 571, 583, 689, 784, 893
FaqI	GGGAC	3 cut(s)	291, 362, 742
FatI	CATG	7 cut(s)	144, 333, 567, 579, 685, 780, 889
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	11
FriOI	GRGCYC	2 cut(s)	576, 788
Fsp4HI	GCNGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	441, 916
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	622
Hin1I	GRCGYC	1 cut(s)	633
Hin1II	CATG	7 cut(s)	148, 337, 571, 583, 689, 784, 893
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HinfI	GANTC	3 cut(s)	358, 659, 879
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	95, 678
Hpy188I	TCNGA	5 cut(s)	29, 118, 538, 598, 708
Hpy188III	TCNNGA	2 cut(s)	227, 938
Hpy8I	GTNNAC	2 cut(s)	95, 678
HpyAV	CCTTC	2 cut(s)	543, 806
HpyCH4III	ACNGT	3 cut(s)	427, 796, 850
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	7 cut(s)	100, 321, 337, 807, 889, 899, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	813
HpyF3I	CTNAG	3 cut(s)	498, 590, 672
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	633
Hsp92II	CATG	7 cut(s)	148, 337, 571, 583, 689, 784, 893
Kzo9I	GATC	9 cut(s)	118, 216, 476, 598, 618, 703, 736, 859, 942
LmnI	GCTCC	5 cut(s)	293, 571, 579, 599, 969
LweI	GCATC	1 cut(s)	166
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	3 cut(s)	359, 367, 607
MalI	GATC	9 cut(s)	120, 218, 478, 600, 620, 705, 738, 861, 944
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	9 cut(s)	118, 216, 476, 598, 618, 703, 736, 859, 942
MboII	GAAGA	8 cut(s)	99, 160, 248, 251, 313, 725, 926, 972
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	1 cut(s)	942
MhlI	GDGCHC	3 cut(s)	576, 788, 974
MluCI	AATT	5 cut(s)	4, 101, 480, 732, 747
MlyI	GAGTC	3 cut(s)	367, 653, 888
MnlI	CCTC	7 cut(s)	83, 83, 323, 431, 457, 552, 810
MseI	TTAA	2 cut(s)	750, 930
MslI	CAYNNNNRTG	4 cut(s)	29, 143, 489, 894
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	947
MunI	CAATTG	1 cut(s)	732
Mva1269I	GAATGC	2 cut(s)	541, 913
MvaI	CCWGG	1 cut(s)	947
MvnI	CGCG	2 cut(s)	37, 47
MwoI	GCNNNNNNNGC	1 cut(s)	813
NdeII	GATC	9 cut(s)	118, 216, 476, 598, 618, 703, 736, 859, 942
NlaIII	CATG	7 cut(s)	148, 337, 571, 583, 689, 784, 893
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	3 cut(s)	359, 367, 607
NspI	RCATGY	2 cut(s)	337, 689
PaeI	GCATGC	1 cut(s)	337
PctI	GAATGC	2 cut(s)	541, 913
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	3 cut(s)	366, 653, 887
PpsI	GAGTC	3 cut(s)	366, 653, 887
Psp124BI	GAGCTC	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	945
PspGI	CCWGG	1 cut(s)	945
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	278, 825
PsuI	RGATCY	1 cut(s)	942
RsaI	GTAC	3 cut(s)	496, 563, 921
RsaNI	GTAC	3 cut(s)	495, 562, 920
RseI	CAYNNNNRTG	4 cut(s)	29, 143, 489, 894
SacI	GAGCTC	1 cut(s)	576
SaqAI	TTAA	2 cut(s)	750, 930
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	9 cut(s)	118, 216, 476, 598, 618, 703, 736, 859, 942
Sau96I	GGNCC	2 cut(s)	278, 825
SchI	GAGTC	3 cut(s)	367, 653, 888
ScrFI	CCNGG	1 cut(s)	947
SduI	GDGCHC	3 cut(s)	576, 788, 974
SetI	ASST	9 cut(s)	94, 226, 374, 396, 563, 576, 596, 873, 951
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	2 cut(s)	278, 825
SmiMI	CAYNNNNRTG	4 cut(s)	29, 143, 489, 894
SmlI	CTYRAG	2 cut(s)	225, 853
SmoI	CTYRAG	2 cut(s)	225, 853
SphI	GCATGC	1 cut(s)	337
Sse9I	AATT	5 cut(s)	4, 101, 480, 732, 747
SsiI	CCGC	4 cut(s)	35, 47, 122, 207
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	945
TaaI	ACNGT	3 cut(s)	427, 796, 850
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	6 cut(s)	215, 252, 356, 452, 877, 937
TaqII	GACCGA	1 cut(s)	295
TasI	AATT	5 cut(s)	4, 101, 480, 732, 747
TatI	WGTACW	1 cut(s)	919
TauI	GCSGC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	750, 930
Tru9I	TTAA	2 cut(s)	750, 930
TscAI	CASTG	4 cut(s)	293, 527, 799, 814
TseFI	GTSAC	3 cut(s)	359, 367, 607
Tsp45I	GTSAC	3 cut(s)	359, 367, 607
TspDTI	ATGAA	7 cut(s)	17, 30, 161, 255, 314, 575, 920
TspGWI	ACGGA	1 cut(s)	535
TspRI	CASTG	4 cut(s)	293, 527, 799, 814
VpaK11BI	GGWCC	2 cut(s)	278, 825
XceI	RCATGY	2 cut(s)	337, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.