Rorug03G0111200

Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003273
Physical Location & Seq
Reverse (-)
8987488 .. 8987934
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0111200.1

Sequence Viewer

Length: 447 bp
ATGTCGTCAAAGAAGATGATCACTCTGAAGAGCTTGGACGGACGGACTCTTGAGGTGGAAGAAGCGGTGGCAAAGAAGTCGCCTATGATCAAGAAAATGATTGAGGATGAAGACGTGATGGAGGATGAGGTTGATGACGAGGACAACGACAACGACAACGTCGTTCATCTCCGGAAGGTGACTTACAAGGTTTTGGACAAGGTCATGGAGTACTGCAAGAGGCACGTTAACGACGACGAGAAGGTGGTCAATGAGGACGAGCTCAAGGCGTGGGACCAAGACTTTATTGTCAAGACTGACAAATCCACCCTCTGCAATCTTCTTCTTGCTGCGTACTACTTGAACATCCAGAGCCTGCTACTCCTGCTATCCAAGAACGCTTTTCACAAGACAGGTGAGGATAAGACAATGGAGGATATGCGAATCCTTCTCGCATGCCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase

Protein Analysis

148

Amino Acids

17.19

Weight (kDa)

4.79

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 5 - 77 2.1e-15 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 287
AccIII TCCGGA 1 cut(s) 171
AciI CCGC 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 2 cut(s) 212, 335
AgsI TTSAA 1 cut(s) 343
AjiI CACGTC 1 cut(s) 115
AluBI AGCT 2 cut(s) 33, 262
AluI AGCT 2 cut(s) 33, 262
Alw21I GWGCWC 1 cut(s) 264
AlwNI CAGNNNCTG 1 cut(s) 355
Aor13HI TCCGGA 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 190, 407
AvaII GGWCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 264
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 316
BccI CCATC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BclI TGATCA 2 cut(s) 18, 87
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
BmcAI AGTACT 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 274
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 117
BpuEI CTTGAG 2 cut(s) 71, 248
BsaWI WCCGGW 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 171
BseGI GGATG 3 cut(s) 112, 130, 345
BseXI GCAGC 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 171
Bsp143I GATC 2 cut(s) 18, 87
BspACI CCGC 1 cut(s) 65
BspEI TCCGGA 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 275
BspQI GCTCTTC 1 cut(s) 23
BssMI GATC 2 cut(s) 18, 87
Bst4CI ACNGT 1 cut(s) 444
Bst6I CTCTTC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 356, 436
BstF5I GGATG 3 cut(s) 112, 130, 345
BstKTI GATC 2 cut(s) 21, 90
BstMBI GATC 2 cut(s) 18, 87
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 117
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 3 cut(s) 112, 130, 345
Cac8I GCNNGC 2 cut(s) 356, 436
CaiI CAGNNNCTG 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 2 cut(s) 211, 334
CviAII CATG 2 cut(s) 205, 435
CviJI RGCY 3 cut(s) 33, 262, 354
CviKI_1 RGCY 3 cut(s) 33, 262, 354
CviQI GTAC 2 cut(s) 211, 334
DpnI GATC 2 cut(s) 20, 89
DpnII GATC 2 cut(s) 18, 87
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 264
FaeI CATG 2 cut(s) 208, 438
FaiI YATR 4 cut(s) 86, 206, 419, 436
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 204, 434
FbaI TGATCA 2 cut(s) 18, 87
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 3 cut(s) 119, 137, 332
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 330
HapII CCGG 1 cut(s) 172
Hin1II CATG 2 cut(s) 208, 438
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 2 cut(s) 46, 423
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 1 cut(s) 172
HphI GGTGA 2 cut(s) 190, 407
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 5 cut(s) 50, 91, 172, 292, 349
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 3 cut(s) 164, 236, 239
HpyAV CCTTC 3 cut(s) 169, 235, 437
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4IV ACGT 3 cut(s) 114, 159, 225
HpyCH4V TGCA 2 cut(s) 216, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpySE526I ACGT 3 cut(s) 114, 159, 225
Hsp92II CATG 2 cut(s) 208, 438
Kpn2I TCCGGA 1 cut(s) 171
Ksp22I TGATCA 2 cut(s) 18, 87
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 18, 87
LguI GCTCTTC 1 cut(s) 23
LpnPI CCDG 5 cut(s) 185, 362, 368, 377, 378
Lsp1109I GCAGC 1 cut(s) 316
MaeII ACGT 3 cut(s) 114, 159, 225
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 20, 89
MboI GATC 2 cut(s) 18, 87
MboII GAAGA 6 cut(s) 25, 40, 71, 122, 311, 314
MhlI GDGCHC 1 cut(s) 264
MlyI GAGTC 1 cut(s) 40
MroI TCCGGA 1 cut(s) 171
MseI TTAA 1 cut(s) 228
MspI CCGG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 364
NdeII GATC 2 cut(s) 18, 87
NlaIII CATG 2 cut(s) 208, 438
NlaIV GGNNCC 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 438
PaeI GCATGC 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 23
PcsI WCGNNNNNNNCGW 3 cut(s) 144, 159, 231
PfeI GAWTC 1 cut(s) 423
PflFI GACNNNGTC 2 cut(s) 158, 200
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 355
PsyI GACNNNGTC 2 cut(s) 158, 200
RsaI GTAC 2 cut(s) 212, 335
RsaNI GTAC 2 cut(s) 211, 334
SacI GAGCTC 1 cut(s) 264
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 2 cut(s) 18, 87
Sau96I GGNCC 1 cut(s) 274
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 1 cut(s) 40
SduI GDGCHC 1 cut(s) 264
SinI GGWCC 1 cut(s) 274
SmlI CTYRAG 2 cut(s) 50, 263
SmoI CTYRAG 2 cut(s) 50, 263
SphI GCATGC 1 cut(s) 438
SsiI CCGC 1 cut(s) 65
SstI GAGCTC 1 cut(s) 264
TaaI ACNGT 1 cut(s) 444
TaiI ACGT 3 cut(s) 117, 162, 228
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 423
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 123, 155
TspGWI ACGGA 2 cut(s) 54, 58
Tth111I GACNNNGTC 2 cut(s) 158, 200
VpaK11BI GGWCC 1 cut(s) 274
XceI RCATGY 1 cut(s) 438
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.