Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003273

Physical Location & Seq

Genomic Coordinates Forward (+)

19341107 .. 19343538

Gene Structure 2432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G263500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAGCCGCATCAAACCAGACCAATTTCCATTTCTTATTTTCTATTCTTTGTATTTCTCTTCTCATATTTCACATCCCTCGCAGCTCAAGAAGTTGAGGATGAAAGAGAATTCGATTATCTTCATGAAAGTGGAAAGGGACCAAAACAGTGGGGAGAGATCAAGGAAGAATGGGCAGCGTGTAAGAATGGAAGCCTGCAATCTCCTATTGATTTATCAAGTCATCGAGTCAAATTAATCCCACACTTGGGTAATCTCAAGACCGGCTATAAACCTGATAATGCCACCCTCAAGAATAGAGGCCATGATATTTCGATTCAATGGGAGACGAATGCTGGATCAATTGAGATAAATGGGACTGAGTATTTTCTAAAACAATGTCACTGGCACTCACCTTCCGAGCATTCAATCAACAACAGGAGCTATGACATGGAGCTCCACATGATTCATATAAGCCCTGATCTCAACGTCACAAACAAGATCGCTGTCATTGCAGTCCTCTACAAGATTGGTCGTGCCAATTCTTTCCTCTCTACGTTGACGAGGCATGTTAAATCCATGATTGATGAAAATCATGAGATTAGCATTGGGATGACTGATCCTAGAAAAATTAGAATCGGCGGGAAAAACTATTACAGGTACATGGGCTCACTCACCGTTCCTCCTTGTACTGAAGGCGTTATTTGGACCATCACTAAAAAGATAAGAACAGTGTCAAGGGATCAAGTAAAGTTATTTCGAGAGGCTGTGCATGATTATGCGGAGGTGAATGCAAGGCCGGTACAACCACTCAACCTTCGAGAGATCCACGTCTATGACCATAGCTCAAGGAGCACAAATAAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

283

Amino Acids

32.47

Weight (kDa)

8.8

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02430 FvH4_6g16680 FvH4_6g16682 FvH4_6g16682 FvH4_6g16682 FvH4_6g16690
malus_domestica	MD00G1067900.v1.1 MD03G1165000.v1.1
prunus_persica	Prupe.4G263400_v2.0.a1 Prupe.4G263500_v2.0.a1 Prupe.4G264600_v2.0.a1 Prupe.7G126600_v2.0.a1
pyrus_communis	pycom03g11960 pycom12g08900
rosa_chinensis	RchiOBHm_Chr3g0470641 RchiOBHm_Chr5g0050381
rosa_laevigata	RLG00000024251 RLG00000034701
rosa_multiflora	Rmu_co8293285.1_g000001 Rmu_co8361179.1_g000001 Rmu_sc0002115.1_g000025 Rmu_sc0005060.1_g000019 Rmu_sc0030351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030530 Rroxscaffold_6G00410640
rosa_rugosa	Rorug03G0111200 Rorug05G0260900
rosa_samantha	Rh3AG160900 Rh3BG185500 Rh3CG175800 Rh3DG189300 Rh5AG332300 Rh5BG342600 Rh5CG369800 Rh5DG355400
rosa_wichuraiana	Rw3G015220 Rw5G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	8, 621, 761
AclWI	GGATC	4 cut(s)	346, 593, 729, 799
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	693
AfaI	GTAC	3 cut(s)	641, 670, 783
AfiI	CCNNNNNNNGG	2 cut(s)	247, 248
AgsI	TTSAA	2 cut(s)	320, 408
AjiI	CACGTC	1 cut(s)	811
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
AluBI	AGCT	4 cut(s)	86, 423, 436, 825
AluI	AGCT	4 cut(s)	86, 423, 436, 825
Alw21I	GWGCWC	2 cut(s)	438, 836
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	4 cut(s)	346, 593, 729, 799
AoxI	GGCC	2 cut(s)	301, 776
ApeKI	GCWGC	2 cut(s)	83, 176
ApoI	RAATTY	1 cut(s)	110
AseI	ATTAAT	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	140, 687
AsuHPI	GGTGA	3 cut(s)	384, 646, 778
AvaII	GGWCC	2 cut(s)	140, 687
BanII	GRGCYC	2 cut(s)	438, 650
Bbv12I	GWGCWC	2 cut(s)	438, 836
BbvI	GCAGC	2 cut(s)	95, 188
BccI	CCATC	1 cut(s)	698
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	603
BisI	GCNGC	3 cut(s)	8, 84, 177
BlsI	GCNGC	3 cut(s)	9, 85, 178
Bme18I	GGWCC	2 cut(s)	140, 687
BmgBI	CACGTC	1 cut(s)	811
BmgT120I	GGNCC	2 cut(s)	140, 687
BmiI	GGNNCC	1 cut(s)	141
BmsI	GCATC	1 cut(s)	19
BpuEI	CTTGAG	4 cut(s)	72, 242, 275, 811
BsaBI	GATNNNNATC	1 cut(s)	570
BsaXI	ACNNNNNCTCC	2 cut(s)	646, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 248
Bse118I	RCCGGY	2 cut(s)	263, 778
Bse1I	ACTGG	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	570
BseGI	GGATG	3 cut(s)	74, 106, 597
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	2 cut(s)	247, 248
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	389
BseXI	GCAGC	2 cut(s)	95, 188
BshFI	GGCC	2 cut(s)	303, 778
BsiHKAI	GWGCWC	2 cut(s)	438, 836
BsiSI	CCGG	2 cut(s)	264, 779
BslFI	GGGAC	2 cut(s)	153, 370
BslI	CCNNNNNNNGG	2 cut(s)	247, 248
BsmAI	GTCTC	1 cut(s)	320
BsmBI	CGTCTC	1 cut(s)	320
BsmFI	GGGAC	2 cut(s)	153, 370
BsmI	GAATGC	3 cut(s)	337, 403, 775
BsnI	GGCC	2 cut(s)	303, 778
Bsp1286I	GDGCHC	3 cut(s)	438, 650, 836
Bsp143I	GATC	7 cut(s)	159, 338, 460, 480, 598, 721, 804
BspACI	CCGC	3 cut(s)	8, 621, 761
BspANI	GGCC	2 cut(s)	303, 778
BspCNI	CTCAG	1 cut(s)	352
BspHI	TCATGA	2 cut(s)	124, 574
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	4 cut(s)	346, 593, 729, 799
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	2 cut(s)	263, 778
BsrI	ACTGG	1 cut(s)	389
BssAI	RCCGGY	2 cut(s)	263, 778
BssMI	GATC	7 cut(s)	159, 338, 460, 480, 598, 721, 804
Bst4CI	ACNGT	3 cut(s)	150, 658, 712
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	3 cut(s)	74, 106, 597
BstKTI	GATC	7 cut(s)	162, 341, 463, 483, 601, 724, 807
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	7 cut(s)	159, 338, 460, 480, 598, 721, 804
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 831
BstNSI	RCATGY	1 cut(s)	551
BstV1I	GCAGC	2 cut(s)	95, 188
BstX2I	RGATCY	1 cut(s)	804
BstXI	CCANNNNNNTGG	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	303, 778
BtrI	CACGTC	1 cut(s)	811
BtsCI	GGATG	3 cut(s)	74, 106, 597
BtsIMutI	CAGTG	3 cut(s)	155, 382, 717
Cac8I	GCNNGC	1 cut(s)	197
CciI	TCATGA	2 cut(s)	124, 574
Cfr10I	RCCGGY	2 cut(s)	263, 778
Cfr13I	GGNCC	2 cut(s)	140, 687
Csp6I	GTAC	3 cut(s)	640, 669, 782
CviAII	CATG	9 cut(s)	125, 305, 430, 442, 548, 559, 575, 643, 752
CviQI	GTAC	3 cut(s)	640, 669, 782
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	7 cut(s)	161, 340, 462, 482, 600, 723, 806
DpnII	GATC	7 cut(s)	159, 338, 460, 480, 598, 721, 804
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	436
Eco24I	GRGCYC	2 cut(s)	438, 650
Eco47I	GGWCC	2 cut(s)	140, 687
Eco53kI	GAGCTC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	693
EcoICRI	GAGCTC	1 cut(s)	436
EcoRI	GAATTC	1 cut(s)	110
EcoT38I	GRGCYC	2 cut(s)	438, 650
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	9 cut(s)	128, 308, 433, 445, 551, 562, 578, 646, 755
FaqI	GGGAC	2 cut(s)	153, 370
FatI	CATG	9 cut(s)	124, 304, 429, 441, 547, 558, 574, 642, 751
FauI	CCCGC	1 cut(s)	614
Fnu4HI	GCNGC	3 cut(s)	8, 84, 177
FokI	GGATG	3 cut(s)	61, 113, 604
FriOI	GRGCYC	2 cut(s)	438, 650
Fsp4HI	GCNGC	3 cut(s)	8, 84, 177
FspBI	CTAG	1 cut(s)	603
GluI	GCNGC	3 cut(s)	8, 84, 177
HaeIII	GGCC	2 cut(s)	303, 778
HapII	CCGG	2 cut(s)	264, 779
Hin1II	CATG	9 cut(s)	128, 308, 433, 445, 551, 562, 578, 646, 755
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	4 cut(s)	228, 316, 445, 615
HpaII	CCGG	2 cut(s)	264, 779
HphI	GGTGA	3 cut(s)	384, 646, 778
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	8 cut(s)	89, 125, 259, 292, 575, 740, 800, 846
Hpy8I	GTNNAC	1 cut(s)	540
HpyAV	CCTTC	3 cut(s)	405, 668, 806
HpyCH4III	ACNGT	3 cut(s)	150, 658, 712
HpyCH4IV	ACGT	3 cut(s)	468, 536, 810
HpyCH4V	TGCA	4 cut(s)	199, 494, 751, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 831
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	3 cut(s)	468, 536, 810
Hsp92II	CATG	9 cut(s)	128, 308, 433, 445, 551, 562, 578, 646, 755
Kzo9I	GATC	7 cut(s)	159, 338, 460, 480, 598, 721, 804
LmnI	GCTCC	4 cut(s)	420, 433, 441, 831
Lsp1109I	GCAGC	2 cut(s)	95, 188
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	3 cut(s)	468, 536, 810
MaeIII	GTNAC	2 cut(s)	380, 469
MalI	GATC	7 cut(s)	161, 340, 462, 482, 600, 723, 806
MboI	GATC	7 cut(s)	159, 338, 460, 480, 598, 721, 804
MboII	GAAGA	3 cut(s)	52, 113, 179
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	804
MhlI	GDGCHC	3 cut(s)	438, 650, 836
MluCI	AATT	6 cut(s)	24, 110, 233, 342, 520, 609
MlyI	GAGTC	1 cut(s)	237
MseI	TTAA	2 cut(s)	236, 552
MslI	CAYNNNNRTG	4 cut(s)	129, 590, 756, 813
MspI	CCGG	2 cut(s)	264, 779
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	3 cut(s)	337, 403, 775
MwoI	GCNNNNNNNGC	2 cut(s)	491, 831
NdeII	GATC	7 cut(s)	159, 338, 460, 480, 598, 721, 804
NlaIII	CATG	9 cut(s)	128, 308, 433, 445, 551, 562, 578, 646, 755
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	2 cut(s)	380, 469
NspI	RCATGY	1 cut(s)	551
PagI	TCATGA	2 cut(s)	124, 574
PctI	GAATGC	3 cut(s)	337, 403, 775
PfeI	GAWTC	3 cut(s)	316, 445, 615
PkrI	GCNGC	3 cut(s)	9, 85, 178
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PshBI	ATTAAT	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	2 cut(s)	140, 687
PsuI	RGATCY	1 cut(s)	804
RsaI	GTAC	3 cut(s)	641, 670, 783
RsaNI	GTAC	3 cut(s)	640, 669, 782
RseI	CAYNNNNRTG	4 cut(s)	129, 590, 756, 813
SacI	GAGCTC	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	236, 552
SatI	GCNGC	3 cut(s)	8, 84, 177
Sau3AI	GATC	7 cut(s)	159, 338, 460, 480, 598, 721, 804
Sau96I	GGNCC	2 cut(s)	140, 687
SchI	GAGTC	1 cut(s)	237
SduI	GDGCHC	3 cut(s)	438, 650, 836
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	2 cut(s)	140, 687
SmiMI	CAYNNNNRTG	4 cut(s)	129, 590, 756, 813
SmlI	CTYRAG	4 cut(s)	87, 257, 290, 826
SmoI	CTYRAG	4 cut(s)	87, 257, 290, 826
Sse9I	AATT	6 cut(s)	24, 110, 233, 342, 520, 609
SsiI	CCGC	3 cut(s)	8, 621, 761
SspMI	CTAG	1 cut(s)	603
SstI	GAGCTC	1 cut(s)	438
TaaI	ACNGT	3 cut(s)	150, 658, 712
TaiI	ACGT	3 cut(s)	471, 539, 813
TaqI	TCGA	5 cut(s)	114, 226, 314, 739, 799
TasI	AATT	6 cut(s)	24, 110, 233, 342, 520, 609
TatI	WGTACW	1 cut(s)	668
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	3 cut(s)	316, 445, 615
Tru1I	TTAA	2 cut(s)	236, 552
Tru9I	TTAA	2 cut(s)	236, 552
TscAI	CASTG	3 cut(s)	155, 389, 717
TseFI	GTSAC	2 cut(s)	380, 469
TseI	GCWGC	2 cut(s)	83, 176
Tsp45I	GTSAC	2 cut(s)	380, 469
TspDTI	ATGAA	6 cut(s)	17, 113, 117, 141, 437, 582
TspRI	CASTG	3 cut(s)	155, 389, 717
VpaK11BI	GGWCC	2 cut(s)	140, 687
VspI	ATTAAT	1 cut(s)	236
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	1 cut(s)	551
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.