Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003273

Physical Location & Seq

Genomic Coordinates Reverse (-)

19532376 .. 19533906

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G264600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAAGCCGCATCAAATCAAACCCATCTGCATTTCTTCTTTACTCTTCTTTTTACTTCTATTCTCACATTACAGTACAGCAGTCGAAGCTCAGGAAGTTGGCAAGTACAATGAGATTAATTACATACATACATATTCTTTTTTTCTTCTTTTCTTTTTTGTGGAAAAGGAAAAAAATTTAATCAATCATATGCATGTATATATTGTGCATATTGCAGAGGATGAAAGAGAGTTCGACTATCTTCAGGGAAGCAGAAAGGGGCCGAAGCAGTGGGGAGAGATGAAGAAGGAATGGGCTGCGTGTAAAAATGGAGTCATGCAATCTCCTATTGATTTATCAAGTCAGAGAGTCAAGCTAATCCCAAACTTGGGCAAACTCAACACCACTTACAAGCCTTGTAATGCCACTGTCAAGAATAGAGGCCATGATATTTCGTTGACAAGGGATGTAAAATCCATGACTGATCAAAAGGCAAAGAGAAACATGGGGATGATTGATCCTAGAAAGATTAAAATTGGTGGGAAAAACTATTACAGATACATGGGCTCACTCACTGTTCCTCCTTGCACTGAAGTCGTTATTTGGACCATCGATAGAAAGATAAGAACAGTCTCAACGGATCAAGTAAAGCTATTTCGATTCGCTGTGCATGATTACGCAGAGATGAATGCAGGGCCAGTACAACCACTTAACCTTCGAGAGATCCAGGTCTATGACCGAAACGCAAGGAGCACAAATAACCAGCAGAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

252

Amino Acids

29.24

Weight (kDa)

9.55

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02430 FvH4_6g16680 FvH4_6g16682 FvH4_6g16682 FvH4_6g16682 FvH4_6g16690
malus_domestica	MD00G1067900.v1.1 MD03G1165000.v1.1
prunus_persica	Prupe.4G263400_v2.0.a1 Prupe.4G263500_v2.0.a1 Prupe.4G264600_v2.0.a1 Prupe.7G126600_v2.0.a1
pyrus_communis	pycom03g11960 pycom12g08900
rosa_chinensis	RchiOBHm_Chr3g0470641 RchiOBHm_Chr5g0050381
rosa_laevigata	RLG00000024251 RLG00000034701
rosa_multiflora	Rmu_co8293285.1_g000001 Rmu_co8361179.1_g000001 Rmu_sc0002115.1_g000025 Rmu_sc0005060.1_g000019 Rmu_sc0030351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030530 Rroxscaffold_6G00410640
rosa_rugosa	Rorug03G0111200 Rorug05G0260900
rosa_samantha	Rh3AG160900 Rh3BG185500 Rh3CG175800 Rh3DG189300 Rh5AG332300 Rh5BG342600 Rh5CG369800 Rh5DG355400
rosa_wichuraiana	Rw3G015220 Rw5G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	3 cut(s)	491, 627, 697
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	2 cut(s)	227, 591
AfaI	GTAC	3 cut(s)	76, 107, 681
AfiI	CCNNNNNNNGG	2 cut(s)	367, 368
AjnI	CCWGG	1 cut(s)	705
AluBI	AGCT	3 cut(s)	89, 355, 631
AluI	AGCT	3 cut(s)	89, 355, 631
Alw21I	GWGCWC	1 cut(s)	734
Alw26I	GTCTC	1 cut(s)	616
AlwI	GGATC	3 cut(s)	491, 627, 697
AoxI	GGCC	3 cut(s)	260, 421, 674
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	1 cut(s)	175
AseI	ATTAAT	1 cut(s)	117
AspS9I	GGNCC	3 cut(s)	260, 585, 674
AvaII	GGWCC	1 cut(s)	585
BanII	GRGCYC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	734
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	2 cut(s)	32, 596
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BciT130I	CCWGG	1 cut(s)	707
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	616
BfaI	CTAG	1 cut(s)	501
BisI	GCNGC	2 cut(s)	8, 297
BlsI	GCNGC	2 cut(s)	9, 298
Bme1390I	CCNGG	1 cut(s)	707
Bme18I	GGWCC	1 cut(s)	585
BmgT120I	GGNCC	3 cut(s)	260, 585, 674
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	707
BmsI	GCATC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	90
Bsa29I	ATCGAT	1 cut(s)	591
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 368
Bse1I	ACTGG	1 cut(s)	677
BseBI	CCWGG	1 cut(s)	707
BseCI	ATCGAT	1 cut(s)	591
BseGI	GGATG	3 cut(s)	226, 451, 495
BseLI	CCNNNNNNNGG	2 cut(s)	367, 368
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	677
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	3 cut(s)	262, 423, 676
BshVI	ATCGAT	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	734
BslI	CCNNNNNNNGG	2 cut(s)	367, 368
BsmAI	GTCTC	1 cut(s)	616
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	3 cut(s)	262, 423, 676
Bsp1286I	GDGCHC	2 cut(s)	548, 734
Bsp143I	GATC	4 cut(s)	463, 496, 619, 702
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	3 cut(s)	262, 423, 676
BspCNI	CTCAG	1 cut(s)	103
BspDI	ATCGAT	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	3 cut(s)	491, 627, 697
BsrI	ACTGG	1 cut(s)	677
BssMI	GATC	4 cut(s)	463, 496, 619, 702
Bst2UI	CCWGG	1 cut(s)	707
Bst4CI	ACNGT	4 cut(s)	74, 409, 556, 610
Bst6I	CTCTTC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	3 cut(s)	226, 451, 495
BstKTI	GATC	4 cut(s)	466, 499, 622, 705
BstMAI	GTCTC	1 cut(s)	616
BstMBI	GATC	4 cut(s)	463, 496, 619, 702
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	707
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	705
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	702
BstYI	RGATCY	1 cut(s)	702
Bsu15I	ATCGAT	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	262, 423, 676
BsuTUI	ATCGAT	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	226, 451, 495
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	4 cut(s)	275, 405, 552, 567
Cfr13I	GGNCC	3 cut(s)	260, 585, 674
ClaI	ATCGAT	1 cut(s)	591
Csp6I	GTAC	3 cut(s)	75, 106, 680
CviAII	CATG	7 cut(s)	194, 316, 425, 457, 484, 541, 650
CviQI	GTAC	3 cut(s)	75, 106, 680
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	4 cut(s)	465, 498, 621, 704
DpnII	GATC	4 cut(s)	463, 496, 619, 702
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	585
Eco57I	CTGAAG	2 cut(s)	227, 591
EcoRII	CCWGG	1 cut(s)	705
EcoT22I	ATGCAT	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	548
FaeI	CATG	7 cut(s)	197, 319, 428, 460, 487, 544, 653
FatI	CATG	7 cut(s)	193, 315, 424, 456, 483, 540, 649
FauNDI	CATATG	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	2 cut(s)	8, 297
FokI	GGATG	3 cut(s)	233, 458, 502
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	2 cut(s)	8, 297
FspBI	CTAG	1 cut(s)	501
GluI	GCNGC	2 cut(s)	8, 297
HaeIII	GGCC	3 cut(s)	262, 423, 676
Hin1II	CATG	7 cut(s)	197, 319, 428, 460, 487, 544, 653
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	3 cut(s)	312, 348, 639
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	3 cut(s)	92, 412, 698
Hpy8I	GTNNAC	1 cut(s)	438
HpyAV	CCTTC	2 cut(s)	280, 704
HpyCH4III	ACNGT	4 cut(s)	74, 409, 556, 610
HpyCH4V	TGCA	8 cut(s)	30, 193, 208, 215, 319, 567, 649, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	7 cut(s)	197, 319, 428, 460, 487, 544, 653
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	4 cut(s)	463, 496, 619, 702
LmnI	GCTCC	1 cut(s)	729
LpnPI	CCDG	6 cut(s)	77, 230, 657, 690, 692, 719
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	501
MalI	GATC	4 cut(s)	465, 498, 621, 704
MboI	GATC	4 cut(s)	463, 496, 619, 702
MboII	GAAGA	5 cut(s)	27, 37, 137, 233, 295
MflI	RGATCY	1 cut(s)	702
MhlI	GDGCHC	2 cut(s)	548, 734
MluCI	AATT	3 cut(s)	118, 175, 513
MlyI	GAGTC	2 cut(s)	321, 357
MnlI	CCTC	3 cut(s)	211, 413, 570
Mph1103I	ATGCAT	1 cut(s)	195
MseI	TTAA	5 cut(s)	117, 179, 510, 690, 754
MslI	CAYNNNNRTG	2 cut(s)	192, 488
MspR9I	CCNGG	1 cut(s)	707
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	1 cut(s)	707
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeI	CATATG	1 cut(s)	189
NdeII	GATC	4 cut(s)	463, 496, 619, 702
NlaIII	CATG	7 cut(s)	197, 319, 428, 460, 487, 544, 653
NlaIV	GGNNCC	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	195
NspI	RCATGY	1 cut(s)	197
PctI	GAATGC	1 cut(s)	673
PfeI	GAWTC	1 cut(s)	639
PkrI	GCNGC	2 cut(s)	9, 298
PleI	GAGTC	2 cut(s)	320, 356
PpsI	GAGTC	2 cut(s)	320, 356
PshBI	ATTAAT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	705
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	3 cut(s)	260, 585, 674
PsuI	RGATCY	1 cut(s)	702
RsaI	GTAC	3 cut(s)	76, 107, 681
RsaNI	GTAC	3 cut(s)	75, 106, 680
RseI	CAYNNNNRTG	2 cut(s)	192, 488
SaqAI	TTAA	5 cut(s)	117, 179, 510, 690, 754
SatI	GCNGC	2 cut(s)	8, 297
Sau3AI	GATC	4 cut(s)	463, 496, 619, 702
Sau96I	GGNCC	3 cut(s)	260, 585, 674
SchI	GAGTC	2 cut(s)	321, 357
ScrFI	CCNGG	1 cut(s)	707
SduI	GDGCHC	2 cut(s)	548, 734
SetI	ASST	5 cut(s)	91, 357, 633, 696, 711
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	1 cut(s)	585
SmiMI	CAYNNNNRTG	2 cut(s)	192, 488
Sse9I	AATT	3 cut(s)	118, 175, 513
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	705
TaaI	ACNGT	4 cut(s)	74, 409, 556, 610
TaqI	TCGA	5 cut(s)	84, 234, 591, 637, 697
TaqII	GACCGA	1 cut(s)	732
TasI	AATT	3 cut(s)	118, 175, 513
TatI	WGTACW	3 cut(s)	74, 105, 679
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	639
Tru1I	TTAA	5 cut(s)	117, 179, 510, 690, 754
Tru9I	TTAA	5 cut(s)	117, 179, 510, 690, 754
TscAI	CASTG	4 cut(s)	275, 412, 559, 574
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	4 cut(s)	17, 237, 296, 680
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	4 cut(s)	275, 412, 559, 574
VpaK11BI	GGWCC	1 cut(s)	585
VspI	ATTAAT	1 cut(s)	117
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	197
XspI	CTAG	1 cut(s)	501
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.