RLG00000034701

Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003273
Physical Location & Seq
Forward (+)
52077854 .. 52079482
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034701

Sequence Viewer

Length: 834 bp
ATGAAGCATCGTGTCTGCAATGTTACTTGTTGGTTTCTTTTCCTTCTAGTTCTATCAGTTGTCACAGCTCAAGAAGTTGAGGATGAGAGAGAGTTCGATTACGTTGAGGGAAGTGAAAAGGGGCCAAATCATTGGGGACAAATGAAGAAAGAATGGGCAGCCTGCAACAATGGAGGCATGCAATCTCCCATCGATCTTTCAAACAAGAGAGTGAAGATAATACCCAAGTTGGGGAAGCTAAAAAAGAGTTACAGACCTAGTAATGCTACCGTCAAGAATAGAGGGCACGACATTTCGCTTCAATGGGAGGGCGACGCAGGATCAGTTCGGATCAACGGAACTGACTACTTGCTTAAACAATGTCACTGGCATTCGCCGTCCGAGCACTCCATCAACGGCAGGAGGTATGACATGGAGCTCCATATGGTCCATCTCAGCCCCGATCCCAATGTGACAAACAAGATTGCTGTCGTCGGAGTCCTTTACAAGTTTGGTCGCCACCCTGATTCTTTCCTCTCTAAGTTGAGGAGGCATGTAAGATCCATGACTGATCGAAAGGAACAGAGATACATAGGGAAGATTGATCCAAGAGAAATCAAAATGGGTGGCAACAACTACTATAGATATATGGGCTCACTCACTGTTCCTCCATGTACTGAAGGTGTCATTTGGACAATCCATAAGCAGATAAGAAGTGTCTCGAGGGAACAAGTAAAACTATTTCGTTCGGCTGTGCACGATTATGCAGAGAGGAATGCGAGGCCAGTACAACCACTCAACCTCCGAGAAATAGAGATGTATGATCAAACAGCAAATCAAGAGCAACACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase

Protein Analysis

278

Amino Acids

32.18

Weight (kDa)

9.41

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Carb_anhydrase PF00194 40 - 265 5.1e-46 Eukaryotic-type carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 328, 338, 437, 534, 578
AcuI CTGAAG 1 cut(s) 678
AfaI GTAC 2 cut(s) 655, 768
AfiI CCNNNNNNNGG 2 cut(s) 230, 231
AgsI TTSAA 2 cut(s) 201, 302
AluBI AGCT 3 cut(s) 68, 238, 418
AluI AGCT 3 cut(s) 68, 238, 418
Alw21I GWGCWC 3 cut(s) 387, 420, 738
Alw26I GTCTC 1 cut(s) 703
Alw44I GTGCAC 1 cut(s) 734
AlwI GGATC 5 cut(s) 328, 338, 437, 534, 578
Ama87I CYCGRG 1 cut(s) 700
AoxI GGCC 2 cut(s) 122, 761
ApaLI GTGCAC 1 cut(s) 734
ApeKI GCWGC 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 122, 427
AvaI CYCGRG 1 cut(s) 700
AvaII GGWCC 1 cut(s) 427
BaeGI GKGCMC 2 cut(s) 288, 738
BanII GRGCYC 2 cut(s) 420, 635
Bbv12I GWGCWC 3 cut(s) 387, 420, 738
BbvI GCAGC 1 cut(s) 170
BccI CCATC 3 cut(s) 197, 398, 438
BceAI ACGGC 2 cut(s) 361, 412
BclI TGATCA 1 cut(s) 802
BcoDI GTCTC 1 cut(s) 703
BfaI CTAG 2 cut(s) 47, 258
BfmI CTRYAG 1 cut(s) 619
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 700
BmgT120I GGNCC 2 cut(s) 122, 427
BmiI GGNNCC 1 cut(s) 123
BmsI GCATC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 54
Bsa29I ATCGAT 1 cut(s) 192
BsaXI ACNNNNNCTCC 4 cut(s) 631, 661, 765, 795
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 231
Bse1I ACTGG 2 cut(s) 371, 764
Bse3DI GCAATG 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 192
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 2 cut(s) 230, 231
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 448
BseNI ACTGG 2 cut(s) 371, 764
BseRI GAGGAG 1 cut(s) 541
BseSI GKGCMC 2 cut(s) 288, 738
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 2 cut(s) 124, 763
BshVI ATCGAT 1 cut(s) 192
BsiHKAI GWGCWC 3 cut(s) 387, 420, 738
BsiHKCI CYCGRG 1 cut(s) 700
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 230, 231
BsmAI GTCTC 1 cut(s) 703
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 2 cut(s) 370, 760
BsnI GGCC 2 cut(s) 124, 763
BsoBI CYCGRG 1 cut(s) 700
Bsp1286I GDGCHC 5 cut(s) 288, 387, 420, 635, 738
Bsp143I GATC 8 cut(s) 193, 320, 330, 442, 539, 550, 583, 802
BspANI GGCC 2 cut(s) 124, 763
BspCNI CTCAG 1 cut(s) 447
BspDI ATCGAT 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 5 cut(s) 328, 338, 437, 534, 578
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 2 cut(s) 371, 764
BssMI GATC 8 cut(s) 193, 320, 330, 442, 539, 550, 583, 802
Bst4CI ACNGT 2 cut(s) 271, 643
BstC8I GCNNGC 2 cut(s) 163, 179
BstDEI CTNAG 2 cut(s) 434, 519
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 8 cut(s) 196, 323, 333, 445, 542, 553, 586, 805
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 8 cut(s) 193, 320, 330, 442, 539, 550, 583, 802
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstNSI RCATGY 2 cut(s) 181, 536
BstSFI CTRYAG 1 cut(s) 619
BstSLI GKGCMC 2 cut(s) 288, 738
BstV1I GCAGC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 539
BstXI CCANNNNNNTGG 1 cut(s) 132
BstYI RGATCY 1 cut(s) 539
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 2 cut(s) 124, 763
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 2 cut(s) 364, 639
Cac8I GCNNGC 2 cut(s) 163, 179
Cfr13I GGNCC 2 cut(s) 122, 427
ClaI ATCGAT 1 cut(s) 192
CseI GACGC 1 cut(s) 323
Csp6I GTAC 2 cut(s) 654, 767
CspCI CAANNNNNGTGG 2 cut(s) 586, 621
CviAII CATG 5 cut(s) 178, 412, 533, 544, 651
CviJI RGCY 9 cut(s) 68, 124, 161, 238, 418, 438, 633, 731, 763
CviKI_1 RGCY 9 cut(s) 68, 124, 161, 238, 418, 438, 633, 731, 763
CviQI GTAC 2 cut(s) 654, 767
DdeI CTNAG 2 cut(s) 434, 519
DpnI GATC 8 cut(s) 195, 322, 332, 444, 541, 552, 585, 804
DpnII GATC 8 cut(s) 193, 320, 330, 442, 539, 550, 583, 802
Ecl136II GAGCTC 1 cut(s) 418
Eco24I GRGCYC 2 cut(s) 420, 635
Eco47I GGWCC 1 cut(s) 427
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 678
Eco88I CYCGRG 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 418
EcoT38I GRGCYC 2 cut(s) 420, 635
FaeI CATG 5 cut(s) 181, 415, 536, 547, 654
FaqI GGGAC 1 cut(s) 150
FatI CATG 5 cut(s) 177, 411, 532, 543, 650
FauNDI CATATG 1 cut(s) 423
FbaI TGATCA 1 cut(s) 802
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 2 cut(s) 420, 635
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 2 cut(s) 47, 258
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 2 cut(s) 124, 763
HgaI GACGC 1 cut(s) 323
Hin1II CATG 5 cut(s) 181, 415, 536, 547, 654
HinfI GANTC 2 cut(s) 477, 506
Hpy166II GTNNAC 1 cut(s) 736
Hpy188I TCNGA 4 cut(s) 330, 382, 476, 785
Hpy188III TCNNGA 4 cut(s) 71, 274, 700, 818
Hpy8I GTNNAC 1 cut(s) 736
Hpy99I CGWCG 2 cut(s) 317, 476
HpyAV CCTTC 2 cut(s) 53, 653
HpyCH4III ACNGT 2 cut(s) 271, 643
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 5 cut(s) 18, 165, 181, 736, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 2 cut(s) 434, 519
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 5 cut(s) 181, 415, 536, 547, 654
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 8 cut(s) 193, 320, 330, 442, 539, 550, 583, 802
LmnI GCTCC 2 cut(s) 415, 423
LpnPI CCDG 6 cut(s) 175, 303, 352, 385, 516, 777
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 16
MaeI CTAG 2 cut(s) 47, 258
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 5 cut(s) 22, 61, 248, 362, 451
MalI GATC 8 cut(s) 195, 322, 332, 444, 541, 552, 585, 804
MboI GATC 8 cut(s) 193, 320, 330, 442, 539, 550, 583, 802
MboII GAAGA 3 cut(s) 157, 226, 589
MflI RGATCY 1 cut(s) 539
MhlI GDGCHC 5 cut(s) 288, 387, 420, 635, 738
MlyI GAGTC 1 cut(s) 486
MmeI TCCRAC 1 cut(s) 454
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 741
Mva1269I GAATGC 2 cut(s) 370, 760
MwoI GCNNNNNNNGC 1 cut(s) 382
NdeI CATATG 1 cut(s) 423
NdeII GATC 8 cut(s) 193, 320, 330, 442, 539, 550, 583, 802
NlaIII CATG 5 cut(s) 181, 415, 536, 547, 654
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 3 cut(s) 61, 362, 451
NspI RCATGY 2 cut(s) 181, 536
PaeI GCATGC 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 700
PctI GAATGC 2 cut(s) 370, 760
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 122, 427
PsuI RGATCY 1 cut(s) 539
RsaI GTAC 2 cut(s) 655, 768
RsaNI GTAC 2 cut(s) 654, 767
RseI CAYNNNNRTG 1 cut(s) 741
SacI GAGCTC 1 cut(s) 420
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 8 cut(s) 193, 320, 330, 442, 539, 550, 583, 802
Sau96I GGNCC 2 cut(s) 122, 427
SchI GAGTC 1 cut(s) 486
SduI GDGCHC 5 cut(s) 288, 387, 420, 635, 738
SetI ASST 8 cut(s) 70, 105, 240, 259, 407, 420, 664, 783
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 619
Sfr274I CTCGAG 1 cut(s) 700
SinI GGWCC 1 cut(s) 427
SlaI CTCGAG 1 cut(s) 700
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 2 cut(s) 69, 700
SmoI CTYRAG 2 cut(s) 69, 700
SphI GCATGC 1 cut(s) 181
SspMI CTAG 2 cut(s) 47, 258
SstI GAGCTC 1 cut(s) 420
TaaI ACNGT 2 cut(s) 271, 643
TaiI ACGT 1 cut(s) 105
TaqI TCGA 4 cut(s) 96, 192, 553, 701
TatI WGTACW 2 cut(s) 653, 766
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 2 cut(s) 371, 646
TseFI GTSAC 3 cut(s) 61, 362, 451
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 3 cut(s) 61, 362, 451
TspDTI ATGAA 2 cut(s) 17, 158
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 2 cut(s) 371, 646
VneI GTGCAC 1 cut(s) 734
VpaK11BI GGWCC 1 cut(s) 427
XceI RCATGY 2 cut(s) 181, 536
XhoI CTCGAG 1 cut(s) 700
XspI CTAG 2 cut(s) 47, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.