Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003273

Physical Location & Seq

Genomic Coordinates Reverse (-)

12187602 .. 12189979

Gene Structure 2378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g11960.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTTTTTGAAGTCAACGTTATAATCTATGTGTTGCAATGCCAACAGCTGCTAATAATCTCCAATCTGCTTGCGATAAACATGGAGCCCCATCGAAGCAAACCCATCTCAATTTCTTGTTTTCTTTTCTTTTTAGTTCTACTCGCGTATTCCGGATCACTCACAGCTCAAGAAGTCGAGGATGAAAGAGAGTTTGATTATCTTCAAGAGGGTGGAAAGGGGCCAAAGCATTGGGGGGAGATTAAGGAAGAATGGGCGGCGTGTAACAGCGGGAGCATGCAATCTCCAATAGATTTATCAAATCACAGGGTTCAATGGGTGGACGACGCTGGAACAATTAAGATAAATGGTACTGAGTATCCGCTAAAACAAGGTCACTGGCATGCCCCAGCGGAGCATTCCATCAACGGCAGAGTATATGACATGGAGCTCCACTTGGTTCATCTAAGCTCCGATCCCAACGTAGCAAACAAGATCGCCGTCACTGCAGTTCTCTACAAGTTCGGTCGTGCAGATTCTTTCCTTTCTACGGTACGTCCTCAACTAAACTCAAGTGTCCTAATTTGCTCACCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

193

Amino Acids

21.53

Weight (kDa)

5.55

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02430 FvH4_6g16680 FvH4_6g16682 FvH4_6g16682 FvH4_6g16682 FvH4_6g16690
malus_domestica	MD00G1067900.v1.1 MD03G1165000.v1.1
prunus_persica	Prupe.4G263400_v2.0.a1 Prupe.4G263500_v2.0.a1 Prupe.4G264600_v2.0.a1 Prupe.7G126600_v2.0.a1
pyrus_communis	pycom03g11960 pycom12g08900
rosa_chinensis	RchiOBHm_Chr3g0470641 RchiOBHm_Chr5g0050381
rosa_laevigata	RLG00000024251 RLG00000034701
rosa_multiflora	Rmu_co8293285.1_g000001 Rmu_co8361179.1_g000001 Rmu_sc0002115.1_g000025 Rmu_sc0005060.1_g000019 Rmu_sc0030351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030530 Rroxscaffold_6G00410640
rosa_rugosa	Rorug03G0111200 Rorug05G0260900
rosa_samantha	Rh3AG160900 Rh3BG185500 Rh3CG175800 Rh3DG189300 Rh5AG332300 Rh5BG342600 Rh5CG369800 Rh5DG355400
rosa_wichuraiana	Rw3G015220 Rw5G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AccII	CGCG	1 cut(s)	146
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	4 cut(s)	257, 270, 362, 392
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	2 cut(s)	163, 449
AfaI	GTAC	2 cut(s)	352, 534
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	3 cut(s)	11, 206, 314
AluBI	AGCT	4 cut(s)	49, 167, 430, 450
AluI	AGCT	4 cut(s)	49, 167, 430, 450
Alw21I	GWGCWC	1 cut(s)	432
AlwI	GGATC	2 cut(s)	163, 449
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	561
BanII	GRGCYC	2 cut(s)	90, 432
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	3 cut(s)	99, 113, 410
BceAI	ACGGC	2 cut(s)	424, 464
BciVI	GTATCC	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	486
BfuI	GTATCC	1 cut(s)	369
BisI	GCNGC	2 cut(s)	50, 258
BlsI	GCNGC	2 cut(s)	51, 259
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	87, 222
BpuEI	CTTGAG	2 cut(s)	153, 535
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	152
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	508
BshFI	GGCC	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	90, 432
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	155, 454, 474
BspACI	CCGC	4 cut(s)	257, 270, 362, 392
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	346
BspEI	TCCGGA	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	87, 222
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	2 cut(s)	163, 449
BsrDI	GCAATG	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	383
BssMI	GATC	3 cut(s)	155, 454, 474
Bst4CI	ACNGT	1 cut(s)	532
BstC8I	GCNNGC	3 cut(s)	72, 278, 384
BstDEI	CTNAG	2 cut(s)	354, 446
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	146
BstKTI	GATC	3 cut(s)	158, 457, 477
BstMBI	GATC	3 cut(s)	155, 454, 474
BstMCI	CGRYCG	1 cut(s)	508
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNSI	RCATGY	2 cut(s)	280, 386
BstSFI	CTRYAG	1 cut(s)	486
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	36
BstXI	CCANNNNNNTGG	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	187
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	376, 483
Cac8I	GCNNGC	3 cut(s)	72, 278, 384
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	351, 533
CviAII	CATG	5 cut(s)	82, 277, 383, 424, 573
CviJI	RGCY	6 cut(s)	49, 88, 167, 223, 430, 450
CviKI_1	RGCY	6 cut(s)	49, 88, 167, 223, 430, 450
CviQI	GTAC	2 cut(s)	351, 533
DdeI	CTNAG	2 cut(s)	354, 446
DpnI	GATC	3 cut(s)	157, 456, 476
DpnII	GATC	3 cut(s)	155, 454, 474
Ecl136II	GAGCTC	1 cut(s)	430
Eco24I	GRGCYC	2 cut(s)	90, 432
Eco53kI	GAGCTC	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	90, 432
FaeI	CATG	5 cut(s)	85, 280, 386, 427, 576
FaiI	YATR	9 cut(s)	23, 30, 83, 278, 384, 418, 420, 425, 574
FatI	CATG	5 cut(s)	81, 276, 382, 423, 572
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	50, 258
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	2 cut(s)	90, 432
Fsp4HI	GCNGC	2 cut(s)	50, 258
GluI	GCNGC	2 cut(s)	50, 258
GsaI	CCCAGC	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	335
Hin1II	CATG	5 cut(s)	85, 280, 386, 427, 576
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	1 cut(s)	515
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	561
Hpy166II	GTNNAC	2 cut(s)	16, 322
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	3 cut(s)	153, 170, 206
Hpy8I	GTNNAC	2 cut(s)	16, 322
Hpy99I	CGWCG	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	3 cut(s)	18, 462, 535
HpyCH4V	TGCA	4 cut(s)	37, 280, 488, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	2 cut(s)	354, 446
HpySE526I	ACGT	3 cut(s)	18, 462, 535
Hsp92II	CATG	5 cut(s)	85, 280, 386, 427, 576
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	3 cut(s)	155, 454, 474
LmnI	GCTCC	6 cut(s)	85, 273, 394, 427, 435, 455
LpnPI	CCDG	5 cut(s)	166, 292, 315, 364, 402
Lsp1109I	GCAGC	1 cut(s)	36
MaeII	ACGT	3 cut(s)	18, 462, 535
MaeIII	GTNAC	3 cut(s)	263, 374, 481
MalI	GATC	3 cut(s)	157, 456, 476
MboI	GATC	3 cut(s)	155, 454, 474
MboII	GAAGA	2 cut(s)	194, 260
MhlI	GDGCHC	2 cut(s)	90, 432
MluCI	AATT	3 cut(s)	111, 336, 561
MnlI	CCTC	3 cut(s)	172, 202, 549
MroI	TCCGGA	1 cut(s)	152
MseI	TTAA	3 cut(s)	243, 339, 577
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	3 cut(s)	49, 270, 392
MspI	CCGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	397
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	485
NdeII	GATC	3 cut(s)	155, 454, 474
NlaIII	CATG	5 cut(s)	85, 280, 386, 427, 576
NlaIV	GGNNCC	2 cut(s)	87, 222
NmuCI	GTSAC	2 cut(s)	374, 481
NspI	RCATGY	2 cut(s)	280, 386
PaeI	GCATGC	2 cut(s)	280, 386
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	51, 259
PsiI	TTATAA	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	432
Psp1406I	AACGTT	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	87, 222
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	352, 534
RsaNI	GTAC	2 cut(s)	351, 533
RseI	CAYNNNNRTG	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	243, 339, 577
SatI	GCNGC	2 cut(s)	50, 258
Sau3AI	GATC	3 cut(s)	155, 454, 474
Sau96I	GGNCC	1 cut(s)	221
SduI	GDGCHC	2 cut(s)	90, 432
SetI	ASST	8 cut(s)	21, 51, 169, 376, 432, 452, 465, 538
SfcI	CTRYAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	2 cut(s)	168, 550
SmoI	CTYRAG	2 cut(s)	168, 550
SphI	GCATGC	2 cut(s)	280, 386
Sse9I	AATT	3 cut(s)	111, 336, 561
SsiI	CCGC	4 cut(s)	257, 270, 362, 392
SstI	GAGCTC	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	3 cut(s)	21, 465, 538
TaqI	TCGA	2 cut(s)	94, 177
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	3 cut(s)	111, 336, 561
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	3 cut(s)	243, 339, 577
Tru9I	TTAA	3 cut(s)	243, 339, 577
TscAI	CASTG	2 cut(s)	383, 490
TseFI	GTSAC	2 cut(s)	374, 481
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	2 cut(s)	374, 481
TspDTI	ATGAA	2 cut(s)	198, 431
TspRI	CASTG	2 cut(s)	383, 490
XceI	RCATGY	2 cut(s)	280, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.