Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003691

Physical Location & Seq

Genomic Coordinates Reverse (-)

3063925 .. 3064737

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G041500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCAAAGTTACTGTGTGGAGTTGCATTGCTAACACTACTTATATGCATATTGGTGACTGCTCCTTGTGTCACAAATGCAACCATAACTTGTGGTGAGGTTACAGCTTTGCTCACTCCATGCATACCCTTTGGAGTTTTTGGAGGCACAGTGCCACCAGATTGTTGCAAAGGAATCAAAGGGCTCAATGCTGCACAGAACGCCACTGCGGAGGATCGAAGAATTGCATGCAGTTGCATTCAAGAAGGGGCTGCTTTGATCCCTGGGATTAATTATGACCGAATTAACACTCTTGGTGATGTTTGTGGCTCTCCCTGTCCTTACAAAGTTTACCCTTCTACTGATTGCTCTAAGGTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

121

Amino Acids

12.38

Weight (kDa)

6.07

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40460
malus_domestica	MD03G1052000.v1.1 MD03G1052100.v1.1 MD11G1054100.v1.1 MD11G1054200.v1.1
prunus_persica	Prupe.6G041500_v2.0.a1 Prupe.6G041600_v2.0.a1
pyrus_communis	pycom03g04140 pycom11g04390 pycom11g04400
rosa_chinensis	RchiOBHm_Chr5g0073111 RchiOBHm_Chr5g0073121
rosa_laevigata	RLG00000036365 RLG00000036368
rosa_multiflora	Rmu_sc0005592.1_g000013 Rmu_sc0005592.1_g000021 Rmu_sc0005592.1_g000023 Rmu_sc0039876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008060 Rroxscaffold_1G00008080 Rroxscaffold_1G00008090
rosa_rugosa	Rorug05G0421200 Rorug05G0421400
rosa_samantha	Rh5AG478300 Rh5BG498900 Rh5BG499000 Rh5BG499100 Rh5CG522100 Rh5CG522200 Rh5CG522300 Rh5DG511100
rosa_wichuraiana	Rw5G044410 Rw5G044420 Rw5G044430 Rw5G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	2 cut(s)	222, 253
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
AlwI	GGATC	2 cut(s)	222, 253
ApeKI	GCWGC	2 cut(s)	191, 251
AseI	ATTAAT	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	67, 107, 308
BanII	GRGCYC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	178, 238
BciT130I	CCWGG	1 cut(s)	264
BisI	GCNGC	2 cut(s)	192, 252
BlsI	GCNGC	2 cut(s)	193, 253
Bme1390I	CCNGG	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	262, 263
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	262, 263
BseMI	GCAATG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	178, 238
BsgI	GTGCAG	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	214, 258
BspACI	CCGC	1 cut(s)	209
BspPI	GGATC	2 cut(s)	222, 253
BsrDI	GCAATG	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	262, 263
BssMI	GATC	2 cut(s)	214, 258
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	15, 151
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	351
BstKTI	GATC	2 cut(s)	217, 261
BstMBI	GATC	2 cut(s)	214, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	178, 238
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	156, 204
Cac8I	GCNNGC	1 cut(s)	229
CviAII	CATG	2 cut(s)	120, 228
CviJI	RGCY	4 cut(s)	107, 184, 251, 309
CviKI_1	RGCY	4 cut(s)	107, 184, 251, 309
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	2 cut(s)	216, 260
DpnII	GATC	2 cut(s)	214, 258
Eco24I	GRGCYC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	262
EcoT22I	ATGCAT	2 cut(s)	50, 125
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	2 cut(s)	123, 231
FaiI	YATR	8 cut(s)	44, 46, 50, 86, 121, 125, 229, 276
FatI	CATG	2 cut(s)	119, 227
Fnu4HI	GCNGC	2 cut(s)	192, 252
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	192, 252
GluI	GCNGC	2 cut(s)	192, 252
Hin1II	CATG	2 cut(s)	123, 231
HinfI	GANTC	1 cut(s)	174
HphI	GGTGA	3 cut(s)	67, 107, 308
Hpy166II	GTNNAC	2 cut(s)	331, 358
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	2 cut(s)	331, 358
HpyAV	CCTTC	2 cut(s)	239, 345
HpyCH4III	ACNGT	2 cut(s)	15, 151
HpyCH4V	TGCA	9 cut(s)	26, 48, 80, 123, 168, 194, 227, 231, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	123, 231
Kzo9I	GATC	2 cut(s)	214, 258
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	4 cut(s)	171, 249, 276, 328
Lsp1109I	GCAGC	2 cut(s)	178, 238
MaeIII	GTNAC	4 cut(s)	9, 55, 70, 100
MalI	GATC	2 cut(s)	216, 260
MboI	GATC	2 cut(s)	214, 258
MboII	GAAGA	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	3 cut(s)	222, 271, 282
MnlI	CCTC	3 cut(s)	91, 137, 205
Mph1103I	ATGCAT	2 cut(s)	50, 125
MseI	TTAA	2 cut(s)	270, 285
MslI	CAYNNNNRTG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	2 cut(s)	214, 258
NlaIII	CATG	2 cut(s)	123, 231
NmuCI	GTSAC	2 cut(s)	55, 70
NsiI	ATGCAT	2 cut(s)	50, 125
NspI	RCATGY	1 cut(s)	231
PaeI	GCATGC	1 cut(s)	231
PasI	CCCWGGG	1 cut(s)	263
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	193, 253
PshBI	ATTAAT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	270, 285
SatI	GCNGC	2 cut(s)	192, 252
Sau3AI	GATC	2 cut(s)	214, 258
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	3 cut(s)	102, 109, 357
SmiMI	CAYNNNNRTG	1 cut(s)	53
SphI	GCATGC	1 cut(s)	231
Sse9I	AATT	3 cut(s)	222, 271, 282
SsiI	CCGC	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	2 cut(s)	15, 151
TaqI	TCGA	1 cut(s)	217
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	222, 271, 282
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	2 cut(s)	270, 285
Tru9I	TTAA	2 cut(s)	270, 285
TscAI	CASTG	2 cut(s)	156, 211
TseFI	GTSAC	2 cut(s)	55, 70
TseI	GCWGC	2 cut(s)	191, 251
Tsp45I	GTSAC	2 cut(s)	55, 70
TspRI	CASTG	2 cut(s)	156, 211
VspI	ATTAAT	1 cut(s)	270
XceI	RCATGY	1 cut(s)	231
Zsp2I	ATGCAT	2 cut(s)	50, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.