Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005592.1

Orthogroup ID

OG0003691

Physical Location & Seq

Genomic Coordinates Reverse (-)

78634 .. 78996

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005592.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggccagatttgaagtctctgcacgtgggtttgctttcatggtgctactggtatccatggtggtgactactccttatgccactaatgcaaccataacttgtggtgaggtgaccaccttactcactccttgcattccatttggagtgttgggagggattgtgccaccagattgttgtgccgggatcaaagggctcaacgctgcacaaaatacaacagaggatcgaagaattgcttgtacttgcattcaagaaggagcagctaggattcctctgattgattatgatcgtataaacacgctcggcgatctttgtggttctccttgtccctacaaagtttatccatctactgactgctctcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

120

Amino Acids

12.73

Weight (kDa)

4.85

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40460
malus_domestica	MD03G1052000.v1.1 MD03G1052100.v1.1 MD11G1054100.v1.1 MD11G1054200.v1.1
prunus_persica	Prupe.6G041500_v2.0.a1 Prupe.6G041600_v2.0.a1
pyrus_communis	pycom03g04140 pycom11g04390 pycom11g04400
rosa_chinensis	RchiOBHm_Chr5g0073111 RchiOBHm_Chr5g0073121
rosa_laevigata	RLG00000036365 RLG00000036368
rosa_multiflora	Rmu_sc0005592.1_g000013 Rmu_sc0005592.1_g000021 Rmu_sc0005592.1_g000023 Rmu_sc0039876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008060 Rroxscaffold_1G00008080 Rroxscaffold_1G00008090
rosa_rugosa	Rorug05G0421200 Rorug05G0421400
rosa_samantha	Rh5AG478300 Rh5BG498900 Rh5BG499000 Rh5BG499100 Rh5CG522100 Rh5CG522200 Rh5CG522300 Rh5DG511100
rosa_wichuraiana	Rw5G044410 Rw5G044420 Rw5G044430 Rw5G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	191, 228
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	14, 248
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	2 cut(s)	191, 228
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	200, 257
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	76, 116, 121
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	195
BbrPI	CACGTG	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	187, 269
BccI	CCATC	1 cut(s)	349
BciVI	GTATCC	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	201, 258
BlsI	GCNGC	2 cut(s)	202, 259
Bme1390I	CCNGG	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	181
BsaAI	YACGTR	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bse1I	ACTGG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	187, 269
BsgI	GTGCAG	2 cut(s)	6, 186
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	2 cut(s)	132, 243
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	183, 220, 283, 304
Bsp19I	CCATGG	1 cut(s)	57
BspANI	GGCC	1 cut(s)	5
BspPI	GGATC	2 cut(s)	191, 228
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	4 cut(s)	183, 220, 283, 304
BssT1I	CCWWGG	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	57
BstEII	GGTNACC	1 cut(s)	109
BstKTI	GATC	4 cut(s)	186, 223, 286, 307
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	4 cut(s)	183, 220, 283, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	187, 269
BsuI	GTATCC	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	2 cut(s)	40, 58
CviJI	RGCY	3 cut(s)	5, 193, 260
CviKI_1	RGCY	3 cut(s)	5, 193, 260
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	4 cut(s)	185, 222, 285, 306
DpnII	GATC	4 cut(s)	183, 220, 283, 304
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	195
Eco72I	CACGTG	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	43, 61
FaiI	YATR	6 cut(s)	41, 59, 78, 95, 282, 290
FalI	AAGNNNNNCTT	2 cut(s)	217, 249
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	2 cut(s)	39, 57
Fnu4HI	GCNGC	2 cut(s)	201, 258
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	201, 258
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	2 cut(s)	201, 258
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	2 cut(s)	43, 61
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	3 cut(s)	76, 116, 121
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	5 cut(s)	23, 89, 132, 203, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	43, 61
Kzo9I	GATC	4 cut(s)	183, 220, 283, 304
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	4 cut(s)	19, 35, 180, 193
Lsp1109I	GCAGC	2 cut(s)	187, 269
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	64, 109
MalI	GATC	4 cut(s)	185, 222, 285, 306
MboI	GATC	4 cut(s)	183, 220, 283, 304
MboII	GAAGA	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	228
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	100, 146, 211, 279
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	2 cut(s)	132, 243
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	4 cut(s)	183, 220, 283, 304
NlaIII	CATG	2 cut(s)	43, 61
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	2 cut(s)	64, 109
PctI	GAATGC	2 cut(s)	132, 243
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	202, 259
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	26
PspCI	CACGTG	1 cut(s)	26
PspEI	GGTNACC	1 cut(s)	109
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	62
SatI	GCNGC	2 cut(s)	201, 258
Sau3AI	GATC	4 cut(s)	183, 220, 283, 304
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	4 cut(s)	28, 111, 119, 262
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	228
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	57
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	223
TasI	AATT	1 cut(s)	228
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	265
TseFI	GTSAC	2 cut(s)	64, 109
TseI	GCWGC	2 cut(s)	200, 257
Tsp45I	GTSAC	2 cut(s)	64, 109
TspDTI	ATGAA	1 cut(s)	28
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.