Rorug05G0421400

Non-specific lipid-transfer protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
58552764 .. 58554047
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0421400.1

Sequence Viewer

Length: 1284 bp
ATGGATGATCTGCCGGACCTTGTTAAGGTTGAAATCCTTTGTCGACTTCCTTGCAAATACGTCGTACGATGCAAATGTTTGTCCAAGCATTGGCTTACTCTCATCTCCGACTCGGACCCCTATTTTGTTAGCCGATTTCAATGTCTCCTAGGACCTGAACGAACCCTACTGTTCTCTCCAACACCGAAAGATCGGTTTACCATGAATGAGCTTTCAGGGCTCAAAACACTCGGGTCATTTAGGCCGAGTTTCCAACCTAATGATCATCAATCCAATTTAGAGCCAATTGTGGTAGCAACATGTAATGACTTGGTTCTGTGCTGTAAAACCCCAATTTGTATTCGACGTGAGTACTTTATCTGCAATCCTTACACCAGACAATTTGTTTCTCTTCCAATCGCACCTCCATCCACCCCTGGTGTATCTGTGGGATTCATTAATTGCGACAGCGATCATAAAAAGGAACAAACTACTGGTGGTAATAGTAACATCACTGGATACAAAGTTGTGCAAATTCCTTATTTCGGATATGATACTGCAGCCTTCCAATTCAAGGTGGACATATTTTCTTTCAAGACCGGTGAGTGGAGAGACTATCTAGTATCATGCCAACTATTTCGTTTTCAAGTGTCGAATCGTCTAGTATCAAGCCAACTAGGGTCTCGTTTTCAAGTGTTGAATCGTGCAGGCATAGCTTACAATGGAGTGTTGTATTGGTCGGGTCCTAATGGCTTTCTTATCGGGATAGATCCATTTAACCCTAAAGAAACTACTGGTTCTAGAAGTAGTGGTGATATTATTGAACATAAATATGGTTATTTCATTGGATTTAATGAGCATTTGGAACCATGCATAGATTTATTGGACCAGCTAGATGTGAGCCATGGAGGATCATGTCTTCGACTATGCCAGTTATATAGAAAACAATGTATACTCCGTGTTTGGGAGTTGAAAGAAGTACAAGAAGAGCAGTTAGTCAACCAAGGAAATTCCAAGTGGTGTCTAACATACAAGGTTTCCTTGGAACAAATAGTTTGGCAAGATCAAAAGATTGATCTGCACTGCAAGGGCTCTAAGTTGCTAGCTTTGGACCCAAATAATGATGATGTCTTGTATTTGAAACTGGATGGACAGATTGTCATTTGCAACATCCGGACATCAGAATTGAAGATAGCTAAACTGCTTATAATTAACTACAGTCCTTGGCCTTATAACGGTGTCTTCCCATTTGTTTTCCCCTCGTGGCCGACACCAGTTCCTAAACTTCCACCACAAAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

427

Amino Acids

48.73

Weight (kDa)

8.0

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 42 1.2e-07 F-box domain
b-prop_At3g26010-like PF24750 75 - 207 6.6e-06 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 84 - 210 7.9e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1187, 1212
AccB7I CCANNNNNTGG 1 cut(s) 90
AccI GTMKAC 2 cut(s) 43, 931
AccIII TCCGGA 1 cut(s) 1152
AclWI GGATC 2 cut(s) 743, 898
AcoI YGGCCR 1 cut(s) 1244
AcsI RAATTY 2 cut(s) 513, 988
AfaI GTAC 3 cut(s) 66, 353, 960
AfiI CCNNNNNNNGG 7 cut(s) 25, 90, 524, 553, 585, 943, 1214
AflIII ACRYGT 1 cut(s) 299
AgeI ACCGGT 1 cut(s) 578
AhdI GACNNNNNGTC 1 cut(s) 1136
AjiI CACGTC 1 cut(s) 347
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 5 cut(s) 211, 695, 871, 1085, 1175
AluI AGCT 5 cut(s) 211, 695, 871, 1085, 1175
Alw26I GTCTC 3 cut(s) 149, 585, 666
AlwI GGATC 2 cut(s) 743, 898
Ama87I CYCGRG 1 cut(s) 230
Aor13HI TCCGGA 1 cut(s) 1152
AoxI GGCC 3 cut(s) 242, 1205, 1244
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 2 cut(s) 513, 988
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AseI ATTAAT 1 cut(s) 438
AsiGI ACCGGT 1 cut(s) 578
AspA2I CCTAGG 1 cut(s) 148
AspS9I GGNCC 6 cut(s) 16, 115, 152, 722, 865, 1090
AsuHPI GGTGA 2 cut(s) 593, 803
AsuNHI GCTAGC 1 cut(s) 1081
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 6 cut(s) 16, 115, 152, 722, 865, 1090
AvrII CCTAGG 1 cut(s) 148
BanII GRGCYC 2 cut(s) 222, 1073
BauI CACGAG 1 cut(s) 1240
BbsI GAAGAC 2 cut(s) 890, 1213
BbvI GCAGC 1 cut(s) 551
BccI CCATC 2 cut(s) 415, 1121
BcgI CGANNNNNNTGC 4 cut(s) 33, 43, 67, 77
BciT130I CCWGG 1 cut(s) 417
BciVI GTATCC 1 cut(s) 491
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 3 cut(s) 149, 585, 666
BfaI CTAG 7 cut(s) 149, 599, 641, 656, 780, 872, 1082
BfmI CTRYAG 2 cut(s) 537, 1195
BfuI GTATCC 1 cut(s) 491
BisI GCNGC 1 cut(s) 540
BlnI CCTAGG 1 cut(s) 148
BlsI GCNGC 1 cut(s) 541
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 417
Bme18I GGWCC 6 cut(s) 16, 115, 152, 722, 865, 1090
BmeRI GACNNNNNGTC 1 cut(s) 1136
BmeT110I CYCGRG 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 347
BmgT120I GGNCC 6 cut(s) 16, 115, 152, 722, 865, 1090
BmiI GGNNCC 4 cut(s) 117, 723, 846, 1092
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 1 cut(s) 59
BmtI GCTAGC 1 cut(s) 1085
BpiI GAAGAC 2 cut(s) 890, 1213
BsaI GGTCTC 1 cut(s) 666
BsaJI CCNNGG 6 cut(s) 148, 415, 883, 982, 1020, 1202
BsaWI WCCGGW 2 cut(s) 578, 1152
Bsc4I CCNNNNNNNGG 7 cut(s) 25, 90, 524, 553, 585, 943, 1214
Bse118I RCCGGY 1 cut(s) 578
Bse1I ACTGG 6 cut(s) 478, 499, 778, 910, 1128, 1253
BseAI TCCGGA 1 cut(s) 1152
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 6 cut(s) 148, 415, 883, 982, 1020, 1202
BseGI GGATG 4 cut(s) 10, 407, 1132, 1149
BseLI CCNNNNNNNGG 7 cut(s) 25, 90, 524, 553, 585, 943, 1214
BseNI ACTGG 6 cut(s) 478, 499, 778, 910, 1128, 1253
BseXI GCAGC 1 cut(s) 551
BsgI GTGCAG 2 cut(s) 705, 1043
BshFI GGCC 3 cut(s) 244, 1207, 1246
BshTI ACCGGT 1 cut(s) 578
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 3 cut(s) 14, 579, 1153
BsiWI CGTACG 1 cut(s) 64
BslI CCNNNNNNNGG 7 cut(s) 25, 90, 524, 553, 585, 943, 1214
BsmAI GTCTC 3 cut(s) 149, 585, 666
BsnI GGCC 3 cut(s) 244, 1207, 1246
Bso31I GGTCTC 1 cut(s) 666
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 222, 1073
Bsp13I TCCGGA 1 cut(s) 1152
Bsp143I GATC 8 cut(s) 7, 190, 262, 451, 748, 890, 1042, 1054
Bsp19I CCATGG 1 cut(s) 883
BspANI GGCC 3 cut(s) 244, 1207, 1246
BspEI TCCGGA 1 cut(s) 1152
BspLI GGNNCC 4 cut(s) 117, 723, 846, 1092
BspMAI CTGCAG 1 cut(s) 541
BspOI GCTAGC 1 cut(s) 1085
BspPI GGATC 2 cut(s) 743, 898
BspQI GCTCTTC 1 cut(s) 960
BspTNI GGTCTC 1 cut(s) 666
BsrFI RCCGGY 1 cut(s) 578
BsrI ACTGG 6 cut(s) 478, 499, 778, 910, 1128, 1253
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 6 cut(s) 148, 415, 883, 982, 1020, 1202
BssMI GATC 8 cut(s) 7, 190, 262, 451, 748, 890, 1042, 1054
BssNAI GTATAC 1 cut(s) 932
BssSI CACGAG 1 cut(s) 1240
BssT1I CCWWGG 5 cut(s) 148, 883, 982, 1020, 1202
Bst1107I GTATAC 1 cut(s) 932
Bst2BI CACGAG 1 cut(s) 1240
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 3 cut(s) 171, 1199, 1217
Bst6I CTCTTC 2 cut(s) 396, 960
BstC8I GCNNGC 2 cut(s) 688, 1083
BstDEI CTNAG 1 cut(s) 1074
BstDSI CCRYGG 1 cut(s) 883
BstENI CCTNNNNNAGG 1 cut(s) 23
BstF5I GGATG 4 cut(s) 10, 407, 1132, 1149
BstKTI GATC 8 cut(s) 10, 193, 265, 454, 751, 893, 1045, 1057
BstMAI GTCTC 3 cut(s) 149, 585, 666
BstMBI GATC 8 cut(s) 7, 190, 262, 451, 748, 890, 1042, 1054
BstMWI GCNNNNNNNGC 2 cut(s) 217, 692
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 415
BstSFI CTRYAG 2 cut(s) 537, 1195
BstV1I GCAGC 1 cut(s) 551
BstV2I GAAGAC 2 cut(s) 890, 1213
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
BstZ17I GTATAC 1 cut(s) 932
BsuI GTATCC 1 cut(s) 491
BsuRI GGCC 3 cut(s) 244, 1207, 1246
BtgI CCRYGG 1 cut(s) 883
BtrI CACGTC 1 cut(s) 347
BtsCI GGATG 4 cut(s) 10, 407, 1132, 1149
BtsI GCAGTG 1 cut(s) 1060
BtsIMutI CAGTG 2 cut(s) 492, 1060
Cac8I GCNNGC 2 cut(s) 688, 1083
Cfr10I RCCGGY 1 cut(s) 578
Cfr13I GGNCC 6 cut(s) 16, 115, 152, 722, 865, 1090
Csp6I GTAC 3 cut(s) 65, 352, 959
CspAI ACCGGT 1 cut(s) 578
CviAII CATG 6 cut(s) 202, 300, 606, 849, 884, 894
CviQI GTAC 3 cut(s) 65, 352, 959
DdeI CTNAG 1 cut(s) 1074
DpnI GATC 8 cut(s) 9, 192, 264, 453, 750, 892, 1044, 1056
DpnII GATC 8 cut(s) 7, 190, 262, 451, 748, 890, 1042, 1054
DriI GACNNNNNGTC 1 cut(s) 1136
EaeI YGGCCR 1 cut(s) 1244
Eam1104I CTCTTC 2 cut(s) 396, 960
Eam1105I GACNNNNNGTC 1 cut(s) 1136
EarI CTCTTC 2 cut(s) 396, 960
Eco130I CCWWGG 5 cut(s) 148, 883, 982, 1020, 1202
Eco24I GRGCYC 2 cut(s) 222, 1073
Eco31I GGTCTC 1 cut(s) 666
Eco47I GGWCC 6 cut(s) 16, 115, 152, 722, 865, 1090
Eco88I CYCGRG 1 cut(s) 230
EcoNI CCTNNNNNAGG 1 cut(s) 23
EcoO109I RGGNCCY 2 cut(s) 152, 722
EcoRII CCWGG 1 cut(s) 415
EcoT14I CCWWGG 5 cut(s) 148, 883, 982, 1020, 1202
EcoT22I ATGCAT 1 cut(s) 854
EcoT38I GRGCYC 2 cut(s) 222, 1073
ErhI CCWWGG 5 cut(s) 148, 883, 982, 1020, 1202
FaeI CATG 6 cut(s) 205, 303, 609, 852, 887, 897
FalI AAGNNNNNCTT 2 cut(s) 1004, 1036
FatI CATG 6 cut(s) 201, 299, 605, 848, 883, 893
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 2 cut(s) 43, 931
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 4 cut(s) 17, 394, 1136, 1139
FriOI GRGCYC 2 cut(s) 222, 1073
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 7 cut(s) 149, 599, 641, 656, 780, 872, 1082
GluI GCNGC 1 cut(s) 540
HaeIII GGCC 3 cut(s) 244, 1207, 1246
HapII CCGG 3 cut(s) 14, 579, 1153
Hin1II CATG 6 cut(s) 205, 303, 609, 852, 887, 897
HincII GTYRAC 2 cut(s) 44, 979
HindII GTYRAC 2 cut(s) 44, 979
HinfI GANTC 4 cut(s) 110, 432, 634, 679
HpaII CCGG 3 cut(s) 14, 579, 1153
HphI GGTGA 2 cut(s) 593, 803
Hpy166II GTNNAC 5 cut(s) 44, 198, 559, 932, 979
Hpy188I TCNGA 4 cut(s) 109, 115, 527, 1162
Hpy188III TCNNGA 4 cut(s) 574, 742, 780, 1153
Hpy8I GTNNAC 5 cut(s) 44, 198, 559, 932, 979
Hpy99I CGWCG 2 cut(s) 65, 348
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 3 cut(s) 171, 1199, 1217
HpyCH4IV ACGT 2 cut(s) 60, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 692
HpyF3I CTNAG 1 cut(s) 1074
HpySE526I ACGT 2 cut(s) 60, 346
Hsp92II CATG 6 cut(s) 205, 303, 609, 852, 887, 897
Kpn2I TCCGGA 1 cut(s) 1152
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 8 cut(s) 7, 190, 262, 451, 748, 890, 1042, 1054
LguI GCTCTTC 1 cut(s) 960
Lsp1109I GCAGC 1 cut(s) 551
LweI GCATC 1 cut(s) 59
MaeI CTAG 7 cut(s) 149, 599, 641, 656, 780, 872, 1082
MaeII ACGT 2 cut(s) 60, 346
MaeIII GTNAC 1 cut(s) 485
MalI GATC 8 cut(s) 9, 192, 264, 453, 750, 892, 1044, 1056
MboI GATC 8 cut(s) 7, 190, 262, 451, 748, 890, 1042, 1054
MboII GAAGA 5 cut(s) 383, 890, 977, 1180, 1213
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 2 cut(s) 222, 1073
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 3 cut(s) 132, 203, 277
MnlI CCTC 3 cut(s) 414, 881, 1249
Mph1103I ATGCAT 1 cut(s) 854
MroI TCCGGA 1 cut(s) 1152
MseI TTAA 5 cut(s) 24, 438, 756, 831, 1191
MslI CAYNNNNRTG 1 cut(s) 810
MspI CCGG 3 cut(s) 14, 579, 1153
MspR9I CCNGG 1 cut(s) 417
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 2 cut(s) 217, 692
NcoI CCATGG 1 cut(s) 883
NdeII GATC 8 cut(s) 7, 190, 262, 451, 748, 890, 1042, 1054
NheI GCTAGC 1 cut(s) 1081
NlaIII CATG 6 cut(s) 205, 303, 609, 852, 887, 897
NlaIV GGNNCC 4 cut(s) 117, 723, 846, 1092
NmeAIII GCCGAG 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 854
NspI RCATGY 1 cut(s) 303
PciI ACATGT 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 960
PfeI GAWTC 3 cut(s) 432, 634, 679
Pfl23II CGTACG 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 90
PinAI ACCGGT 1 cut(s) 578
PkrI GCNGC 1 cut(s) 541
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 2 cut(s) 152, 722
PscI ACATGT 1 cut(s) 299
PshBI ATTAAT 1 cut(s) 438
PsiI TTATAA 2 cut(s) 1187, 1212
Psp5II RGGWCCY 2 cut(s) 152, 722
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspLI CGTACG 1 cut(s) 64
PspN4I GGNNCC 4 cut(s) 117, 723, 846, 1092
PspPI GGNCC 6 cut(s) 16, 115, 152, 722, 865, 1090
PspPPI RGGWCCY 2 cut(s) 152, 722
PsrI GAACNNNNNNTAC 2 cut(s) 150, 182
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 1 cut(s) 748
RsaI GTAC 3 cut(s) 66, 353, 960
RsaNI GTAC 3 cut(s) 65, 352, 959
RseI CAYNNNNRTG 1 cut(s) 810
SalI GTCGAC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 960
SaqAI TTAA 5 cut(s) 24, 438, 756, 831, 1191
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 8 cut(s) 7, 190, 262, 451, 748, 890, 1042, 1054
Sau96I GGNCC 6 cut(s) 16, 115, 152, 722, 865, 1090
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 2 cut(s) 222, 1073
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 2 cut(s) 537, 1195
SinI GGWCC 6 cut(s) 16, 115, 152, 722, 865, 1090
SmiMI CAYNNNNRTG 1 cut(s) 810
SspMI CTAG 7 cut(s) 149, 599, 641, 656, 780, 872, 1082
StyD4I CCNGG 1 cut(s) 415
StyI CCWWGG 5 cut(s) 148, 883, 982, 1020, 1202
TaaI ACNGT 3 cut(s) 171, 1199, 1217
TaiI ACGT 2 cut(s) 63, 349
TaqI TCGA 4 cut(s) 43, 343, 632, 901
TatI WGTACW 2 cut(s) 351, 958
TfiI GAWTC 3 cut(s) 432, 634, 679
Tru1I TTAA 5 cut(s) 24, 438, 756, 831, 1191
Tru9I TTAA 5 cut(s) 24, 438, 756, 831, 1191
TscAI CASTG 2 cut(s) 499, 1067
TseI GCWGC 1 cut(s) 539
TspDTI ATGAA 3 cut(s) 218, 424, 811
TspGWI ACGGA 1 cut(s) 926
TspRI CASTG 2 cut(s) 499, 1067
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 6 cut(s) 16, 115, 152, 722, 865, 1090
VspI ATTAAT 1 cut(s) 438
XagI CCTNNNNNAGG 1 cut(s) 23
XapI RAATTY 2 cut(s) 513, 988
XbaI TCTAGA 1 cut(s) 779
XceI RCATGY 1 cut(s) 303
XmaJI CCTAGG 1 cut(s) 148
XmiI GTMKAC 2 cut(s) 43, 931
XspI CTAG 7 cut(s) 149, 599, 641, 656, 780, 872, 1082
ZrmI AGTACT 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.