Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003691

Physical Location & Seq

Genomic Coordinates Reverse (-)

3404889 .. 3405678

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g04390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCCAGGTTTTCGGTCATCGTGGCAATAGTGTTCTTATTTGTGACAGCTTCTTCTGTCAGTTACGCCACCATAACTTGTGATCAAGTGGTAGCTTGGCTCACTCCATGCATACCCTTTGGAGTGTTTGGAGGCACAGTGCCCCCAGATTGCTGTAAAGGCATAAAAGAGCTGAATGCTGCACAAAACACGACGATCGACCGTAGAATTGCTTGCAGTTGCATTCAGGACGGAGCTGCAGCAATCCCCGGGATTAATTATGACCGGATTAACACTCTTGGTGATGTCTGTGGCTCTCCTTGTCCTTACAAAGTTTACCCCTCTACAAATTGCTCTGCGGTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

116

Amino Acids

12.13

Weight (kDa)

5.99

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40460
malus_domestica	MD03G1052000.v1.1 MD03G1052100.v1.1 MD11G1054100.v1.1 MD11G1054200.v1.1
prunus_persica	Prupe.6G041500_v2.0.a1 Prupe.6G041600_v2.0.a1
pyrus_communis	pycom03g04140 pycom11g04390 pycom11g04400
rosa_chinensis	RchiOBHm_Chr5g0073111 RchiOBHm_Chr5g0073121
rosa_laevigata	RLG00000036365 RLG00000036368
rosa_multiflora	Rmu_sc0005592.1_g000013 Rmu_sc0005592.1_g000021 Rmu_sc0005592.1_g000023 Rmu_sc0039876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008060 Rroxscaffold_1G00008080 Rroxscaffold_1G00008090
rosa_rugosa	Rorug05G0421200 Rorug05G0421400
rosa_samantha	Rh5AG478300 Rh5BG498900 Rh5BG499000 Rh5BG499100 Rh5CG522100 Rh5CG522200 Rh5CG522300 Rh5DG511100
rosa_wichuraiana	Rw5G044410 Rw5G044420 Rw5G044430 Rw5G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	3
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	4 cut(s)	50, 95, 172, 236
AluI	AGCT	4 cut(s)	50, 95, 172, 236
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	179, 236, 239
AseI	ATTAAT	1 cut(s)	255
AsuC2I	CCSGG	2 cut(s)	249, 250
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	166, 223, 251
BciT130I	CCWGG	1 cut(s)	7
BclI	TGATCA	1 cut(s)	82
BcnI	CCSGG	2 cut(s)	249, 250
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	3 cut(s)	180, 237, 240
BlsI	GCNGC	3 cut(s)	181, 238, 241
Bme1390I	CCNGG	3 cut(s)	7, 249, 250
BmeT110I	CYCGRG	1 cut(s)	248
BmrFI	CCNGG	3 cut(s)	7, 249, 250
BpuMI	CCSGG	2 cut(s)	249, 250
BsaJI	CCNNGG	2 cut(s)	247, 248
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	2 cut(s)	247, 248
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	3 cut(s)	166, 223, 251
BsgI	GTGCAG	1 cut(s)	165
Bsh1285I	CGRYCG	2 cut(s)	198, 202
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	2 cut(s)	198, 202
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	249, 265
BsmI	GAATGC	2 cut(s)	181, 222
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	82, 195
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	5
BspMAI	CTGCAG	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	247, 248
BssMI	GATC	2 cut(s)	82, 195
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	2 cut(s)	139, 203
BstC8I	GCNNGC	1 cut(s)	214
BstKTI	GATC	2 cut(s)	85, 198
BstMBI	GATC	2 cut(s)	82, 195
BstMCI	CGRYCG	2 cut(s)	198, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	3 cut(s)	5, 247, 248
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	166, 223, 251
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	214
Cfr9I	CCCGGG	1 cut(s)	248
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	7 cut(s)	5, 50, 95, 100, 172, 236, 294
CviKI_1	RGCY	7 cut(s)	5, 50, 95, 100, 172, 236, 294
DpnI	GATC	2 cut(s)	84, 197
DpnII	GATC	2 cut(s)	82, 195
EaeI	YGGCCR	1 cut(s)	3
Eco88I	CYCGRG	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	113
FaeI	CATG	1 cut(s)	111
FaiI	YATR	5 cut(s)	74, 109, 113, 164, 261
FatI	CATG	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	180, 237, 240
Fsp4HI	GCNGC	3 cut(s)	180, 237, 240
GluI	GCNGC	3 cut(s)	180, 237, 240
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	249, 265
Hin1II	CATG	1 cut(s)	111
HpaII	CCGG	2 cut(s)	249, 265
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	347
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	196
HpyCH4III	ACNGT	2 cut(s)	139, 203
HpyCH4V	TGCA	5 cut(s)	111, 182, 216, 222, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	82, 195
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	5 cut(s)	19, 159, 212, 262, 278
Lsp1109I	GCAGC	3 cut(s)	166, 223, 251
MaeIII	GTNAC	2 cut(s)	43, 62
MalI	GATC	2 cut(s)	84, 197
MboI	GATC	2 cut(s)	82, 195
MboII	GAAGA	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	144
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	207, 256, 328
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	125, 331
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	255, 270
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	249, 265
MspR9I	CCNGG	3 cut(s)	7, 249, 250
Mva1269I	GAATGC	2 cut(s)	181, 222
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	2 cut(s)	249, 250
NdeII	GATC	2 cut(s)	82, 195
NlaIII	CATG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	113
PctI	GAATGC	2 cut(s)	181, 222
PkrI	GCNGC	3 cut(s)	181, 238, 241
Ple19I	CGATCG	1 cut(s)	198
PshBI	ATTAAT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PstI	CTGCAG	1 cut(s)	241
PvuI	CGATCG	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	255, 270
SatI	GCNGC	3 cut(s)	180, 237, 240
Sau3AI	GATC	2 cut(s)	82, 195
ScrFI	CCNGG	3 cut(s)	7, 249, 250
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	5 cut(s)	11, 52, 97, 174, 238
SfcI	CTRYAG	1 cut(s)	237
SmaI	CCCGGG	1 cut(s)	250
Sse9I	AATT	3 cut(s)	207, 256, 328
SsiI	CCGC	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	5, 247, 248
TaaI	ACNGT	2 cut(s)	139, 203
TaqI	TCGA	1 cut(s)	198
TaqII	GACCGA	1 cut(s)	4
TasI	AATT	3 cut(s)	207, 256, 328
Tru1I	TTAA	2 cut(s)	255, 270
Tru9I	TTAA	2 cut(s)	255, 270
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	3 cut(s)	179, 236, 239
Tsp45I	GTSAC	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	246
TspMI	CCCGGG	1 cut(s)	248
TspRI	CASTG	1 cut(s)	144
VspI	ATTAAT	1 cut(s)	255
XmaI	CCCGGG	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.