Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039876.1

Orthogroup ID

OG0003691

Physical Location & Seq

Genomic Coordinates Forward (+)

752 .. 1111

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039876.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggccagatttgaagtctctgcacgtgggtttgctttcatggtgctactggtcatggtggtgactactccttatgccactaatgcaaccataacttgtggtgaggtgaccaccttactcactccttgcattccatttggagtgttgggagggattgtgccaccagattgttgtgccgggatcaaagggctcaacgctgcacaaaatacaacagaggatcgaagaattgcttgtacttgcattcaagaaggagcagccaggattcctctgattgattatgatcgtataaacacgctcggcgatctttgtggttctccttgtccctacaaagtttatccatctactgactgctctcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

119

Amino Acids

12.64

Weight (kDa)

4.85

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40460
malus_domestica	MD03G1052000.v1.1 MD03G1052100.v1.1 MD11G1054100.v1.1 MD11G1054200.v1.1
prunus_persica	Prupe.6G041500_v2.0.a1 Prupe.6G041600_v2.0.a1
pyrus_communis	pycom03g04140 pycom11g04390 pycom11g04400
rosa_chinensis	RchiOBHm_Chr5g0073111 RchiOBHm_Chr5g0073121
rosa_laevigata	RLG00000036365 RLG00000036368
rosa_multiflora	Rmu_sc0005592.1_g000013 Rmu_sc0005592.1_g000021 Rmu_sc0005592.1_g000023 Rmu_sc0039876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008060 Rroxscaffold_1G00008080 Rroxscaffold_1G00008090
rosa_rugosa	Rorug05G0421200 Rorug05G0421400
rosa_samantha	Rh5AG478300 Rh5BG498900 Rh5BG499000 Rh5BG499100 Rh5CG522100 Rh5CG522200 Rh5CG522300 Rh5DG511100
rosa_wichuraiana	Rw5G044410 Rw5G044420 Rw5G044430 Rw5G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	188, 225
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	14, 245
AjnI	CCWGG	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	2 cut(s)	188, 225
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	197, 254
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	3 cut(s)	73, 113, 118
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	192
BbrPI	CACGTG	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	184, 266
BccI	CCATC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	198, 255
BlsI	GCNGC	2 cut(s)	199, 256
Bme1390I	CCNGG	2 cut(s)	178, 259
BmrFI	CCNGG	2 cut(s)	178, 259
BpuMI	CCSGG	1 cut(s)	178
BsaAI	YACGTR	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bse1I	ACTGG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	184, 266
BsgI	GTGCAG	2 cut(s)	6, 183
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	306
BsmI	GAATGC	2 cut(s)	129, 240
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	4 cut(s)	180, 217, 280, 301
BspANI	GGCC	1 cut(s)	5
BspPI	GGATC	2 cut(s)	188, 225
BsrI	ACTGG	1 cut(s)	54
BssMI	GATC	4 cut(s)	180, 217, 280, 301
Bst2UI	CCWGG	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	106
BstKTI	GATC	4 cut(s)	183, 220, 283, 304
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	4 cut(s)	180, 217, 280, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	259
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	176, 257
BstV1I	GCAGC	2 cut(s)	184, 266
BsuRI	GGCC	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	2 cut(s)	40, 55
CviJI	RGCY	3 cut(s)	5, 190, 257
CviKI_1	RGCY	3 cut(s)	5, 190, 257
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	4 cut(s)	182, 219, 282, 303
DpnII	GATC	4 cut(s)	180, 217, 280, 301
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	192
Eco72I	CACGTG	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	2 cut(s)	43, 58
FaiI	YATR	6 cut(s)	41, 56, 75, 92, 279, 287
FalI	AAGNNNNNCTT	2 cut(s)	214, 246
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	2 cut(s)	39, 54
Fnu4HI	GCNGC	2 cut(s)	198, 255
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	198, 255
GluI	GCNGC	2 cut(s)	198, 255
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	2 cut(s)	43, 58
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	3 cut(s)	73, 113, 118
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	5 cut(s)	23, 86, 129, 200, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	43, 58
Kzo9I	GATC	4 cut(s)	180, 217, 280, 301
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	6 cut(s)	19, 35, 177, 190, 244, 271
Lsp1109I	GCAGC	2 cut(s)	184, 266
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	61, 106
MalI	GATC	4 cut(s)	182, 219, 282, 303
MboI	GATC	4 cut(s)	180, 217, 280, 301
MboII	GAAGA	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	225
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	97, 143, 208, 276
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	178, 259
Mva1269I	GAATGC	2 cut(s)	129, 240
MvaI	CCWGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	4 cut(s)	180, 217, 280, 301
NlaIII	CATG	2 cut(s)	43, 58
NmeAIII	GCCGAG	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	61, 106
PctI	GAATGC	2 cut(s)	129, 240
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	199, 256
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	257
PspCI	CACGTG	1 cut(s)	26
PspEI	GGTNACC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	59
SatI	GCNGC	2 cut(s)	198, 255
Sau3AI	GATC	4 cut(s)	180, 217, 280, 301
ScrFI	CCNGG	2 cut(s)	178, 259
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	3 cut(s)	28, 108, 116
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	176, 257
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	220
TasI	AATT	1 cut(s)	225
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	262
TseFI	GTSAC	2 cut(s)	61, 106
TseI	GCWGC	2 cut(s)	197, 254
Tsp45I	GTSAC	2 cut(s)	61, 106
TspDTI	ATGAA	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.