Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005592.1

Orthogroup ID

OG0003691

Physical Location & Seq

Genomic Coordinates Reverse (-)

68095 .. 68451

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005592.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atggccagatttgaagtctatgggtttgctttcatgatgttactggtatccatgctggtgactactccttatgtcagtaatgcaaccataacttgtggtgaggtgaccaccttactcactccttgcattccattcggagtgtttggaggggttgtgccaccggattgttgtgctgggatcaaagggctcaatgctgcaaaaaagacaacagaggatcgaagaactgcttgtacttgcattcaagaaggagctgctaggattcctgggattgattatgatcgtataaacatgctcggcgatctttgtggttctccttctccctacaaagtttatccatctactaattgctctcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

118

Amino Acids

12.62

Weight (kDa)

6.12

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40460
malus_domestica	MD03G1052000.v1.1 MD03G1052100.v1.1 MD11G1054100.v1.1 MD11G1054200.v1.1
prunus_persica	Prupe.6G041500_v2.0.a1 Prupe.6G041600_v2.0.a1
pyrus_communis	pycom03g04140 pycom11g04390 pycom11g04400
rosa_chinensis	RchiOBHm_Chr5g0073111 RchiOBHm_Chr5g0073121
rosa_laevigata	RLG00000036365 RLG00000036368
rosa_multiflora	Rmu_sc0005592.1_g000013 Rmu_sc0005592.1_g000021 Rmu_sc0005592.1_g000023 Rmu_sc0039876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008060 Rroxscaffold_1G00008080 Rroxscaffold_1G00008090
rosa_rugosa	Rorug05G0421200 Rorug05G0421400
rosa_samantha	Rh5AG478300 Rh5BG498900 Rh5BG499000 Rh5BG499100 Rh5CG522100 Rh5CG522200 Rh5CG522300 Rh5DG511100
rosa_wichuraiana	Rw5G044410 Rw5G044420 Rw5G044430 Rw5G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	185, 222
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	14, 242
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
AlwI	GGATC	2 cut(s)	185, 222
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	194, 251
AsuHPI	GGTGA	3 cut(s)	70, 110, 115
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	181, 238
BccI	CCATC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	264
BciVI	GTATCC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	2 cut(s)	195, 252
BlsI	GCNGC	2 cut(s)	196, 253
Bme1390I	CCNGG	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	263
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bse1I	ACTGG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	263
BseJI	GATNNNNATC	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	181, 238
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	161
BsmI	GAATGC	2 cut(s)	126, 237
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	4 cut(s)	177, 214, 277, 298
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	33
BspPI	GGATC	2 cut(s)	185, 222
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	4 cut(s)	177, 214, 277, 298
Bst2UI	CCWGG	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	351
BstEII	GGTNACC	1 cut(s)	103
BstKTI	GATC	4 cut(s)	180, 217, 280, 301
BstMBI	GATC	4 cut(s)	177, 214, 277, 298
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	292
BstPI	GGTNACC	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	181, 238
BsuI	GTATCC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	5
CciI	TCATGA	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	3 cut(s)	34, 52, 289
CviJI	RGCY	3 cut(s)	5, 187, 251
CviKI_1	RGCY	3 cut(s)	5, 187, 251
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	4 cut(s)	179, 216, 279, 300
DpnII	GATC	4 cut(s)	177, 214, 277, 298
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	189
Eco91I	GGTNACC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	3 cut(s)	37, 55, 292
FaiI	YATR	8 cut(s)	21, 35, 53, 72, 89, 276, 284, 290
FalI	AAGNNNNNCTT	2 cut(s)	211, 243
FatI	CATG	3 cut(s)	33, 51, 288
Fnu4HI	GCNGC	2 cut(s)	195, 252
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	2 cut(s)	195, 252
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	2 cut(s)	195, 252
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	3 cut(s)	37, 55, 292
HinfI	GANTC	1 cut(s)	259
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	3 cut(s)	70, 110, 115
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	2 cut(s)	34, 242
HpyAV	CCTTC	2 cut(s)	239, 324
HpyCH4V	TGCA	4 cut(s)	83, 126, 197, 237
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	37, 55, 292
Kzo9I	GATC	4 cut(s)	177, 214, 277, 298
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	7 cut(s)	19, 29, 41, 159, 174, 249, 276
Lsp1109I	GCAGC	2 cut(s)	181, 238
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	3 cut(s)	39, 58, 103
MalI	GATC	4 cut(s)	179, 216, 279, 300
MboI	GATC	4 cut(s)	177, 214, 277, 298
MboII	GAAGA	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	343
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	94, 140, 205
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	264
Mva1269I	GAATGC	2 cut(s)	126, 237
MvaI	CCWGG	1 cut(s)	264
NdeII	GATC	4 cut(s)	177, 214, 277, 298
NlaIII	CATG	3 cut(s)	37, 55, 292
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	2 cut(s)	58, 103
NspI	RCATGY	1 cut(s)	292
PagI	TCATGA	1 cut(s)	33
PctI	GAATGC	2 cut(s)	126, 237
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	196, 253
Psp6I	CCWGG	1 cut(s)	262
PspEI	GGTNACC	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	262
PsrI	GAACNNNNNNTAC	2 cut(s)	214, 246
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	56
SatI	GCNGC	2 cut(s)	195, 252
Sau3AI	GATC	4 cut(s)	177, 214, 277, 298
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	3 cut(s)	105, 113, 253
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	343
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	262
TaqI	TCGA	1 cut(s)	217
TasI	AATT	1 cut(s)	343
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	259
TseFI	GTSAC	2 cut(s)	58, 103
TseI	GCWGC	2 cut(s)	194, 251
Tsp45I	GTSAC	2 cut(s)	58, 103
TspDTI	ATGAA	1 cut(s)	22
XceI	RCATGY	1 cut(s)	292
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.