Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003691

Physical Location & Seq

Genomic Coordinates Reverse (-)

3066124 .. 3068370

Gene Structure 2247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G041600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCCAGGTCTGCAGTCTGTGGGGCGGCATTCATCGTGGTGCTATTATGCGTGCTCATGACTACTCCTTACGTCATTAATGCAGCGGTAACTTGCGGTCAGGTTGTCACCTTACTCACTCCATACATCCCCTTTGGAGTATTTGGAGGGACTGTGCCACCAGAATGTTGTGCAGGCATAAAAGGGCTCCATGATGCACAAAACACCGCAGAGGATCGCAGAACTGCATGCAGTTGCATTCAACAGGGGGCTGCAATGATCCCTGGGATTGACTATGACCGCATTAACACGCTGGGCGATCGATGCGGCTCTCCTTGTCCGTACAAAGTTTACCCCTCTACTAATTGCTCCGAGCTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

121

Amino Acids

12.6

Weight (kDa)

5.61

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40460
malus_domestica	MD03G1052000.v1.1 MD03G1052100.v1.1 MD11G1054100.v1.1 MD11G1054200.v1.1
prunus_persica	Prupe.6G041500_v2.0.a1 Prupe.6G041600_v2.0.a1
pyrus_communis	pycom03g04140 pycom11g04390 pycom11g04400
rosa_chinensis	RchiOBHm_Chr5g0073111 RchiOBHm_Chr5g0073121
rosa_laevigata	RLG00000036365 RLG00000036368
rosa_multiflora	Rmu_sc0005592.1_g000013 Rmu_sc0005592.1_g000021 Rmu_sc0005592.1_g000023 Rmu_sc0039876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008060 Rroxscaffold_1G00008080 Rroxscaffold_1G00008090
rosa_rugosa	Rorug05G0421200 Rorug05G0421400
rosa_samantha	Rh5AG478300 Rh5BG498900 Rh5BG499000 Rh5BG499100 Rh5CG522100 Rh5CG522200 Rh5CG522300 Rh5DG511100
rosa_wichuraiana	Rw5G044410 Rw5G044420 Rw5G044430 Rw5G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	26, 86, 96, 207, 280, 306
AclWI	GGATC	2 cut(s)	222, 253
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	323
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	2 cut(s)	5, 262
AluBI	AGCT	2 cut(s)	355, 360
AluI	AGCT	2 cut(s)	355, 360
Alw21I	GWGCWC	1 cut(s)	57
AlwI	GGATC	2 cut(s)	222, 253
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	83, 251
AseI	ATTAAT	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	100
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	95, 238
BciT130I	CCWGG	2 cut(s)	7, 264
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	4 cut(s)	27, 84, 252, 307
BlpI	GCTNAGC	1 cut(s)	356
BlsI	GCNGC	4 cut(s)	28, 85, 253, 308
Bme1390I	CCNGG	2 cut(s)	7, 264
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	2 cut(s)	7, 264
BmsI	GCATC	2 cut(s)	184, 293
Bpu1102I	GCTNAGC	1 cut(s)	356
Bsa29I	ATCGAT	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	262, 263
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	7, 264
BseCI	ATCGAT	1 cut(s)	301
BseDI	CCNNGG	2 cut(s)	262, 263
BseGI	GGATG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	95, 238
BseYI	CCCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	301
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	163
BsmI	GAATGC	2 cut(s)	29, 237
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	57, 189
Bsp143I	GATC	3 cut(s)	214, 258, 298
Bsp1720I	GCTNAGC	1 cut(s)	356
BspACI	CCGC	6 cut(s)	26, 86, 96, 207, 280, 306
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	2 cut(s)	222, 253
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	262, 263
BssMI	GATC	3 cut(s)	214, 258, 298
Bst2UI	CCWGG	2 cut(s)	7, 264
Bst4CI	ACNGT	1 cut(s)	154
BstC8I	GCNNGC	3 cut(s)	53, 175, 229
BstDEI	CTNAG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	126
BstKTI	GATC	3 cut(s)	217, 261, 301
BstMBI	GATC	3 cut(s)	214, 258, 298
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 303
BstNI	CCWGG	2 cut(s)	7, 264
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	5, 262
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	95, 238
Bsu15I	ATCGAT	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	3 cut(s)	53, 175, 229
CciI	TCATGA	1 cut(s)	57
ClaI	ATCGAT	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	3 cut(s)	58, 191, 228
CviJI	RGCY	6 cut(s)	5, 187, 251, 309, 355, 360
CviKI_1	RGCY	6 cut(s)	5, 187, 251, 309, 355, 360
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	3 cut(s)	216, 260, 300
DpnII	GATC	3 cut(s)	214, 258, 298
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	5, 262
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	3 cut(s)	61, 194, 231
FaiI	YATR	7 cut(s)	49, 59, 124, 179, 192, 229, 276
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	3 cut(s)	57, 190, 227
Fnu4HI	GCNGC	4 cut(s)	27, 84, 252, 307
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	4 cut(s)	27, 84, 252, 307
GluI	GCNGC	4 cut(s)	27, 84, 252, 307
GsaI	CCCAGC	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	61, 194, 231
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	8 cut(s)	14, 83, 173, 197, 227, 231, 237, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 303
HpyF3I	CTNAG	1 cut(s)	356
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	61, 194, 231
Kzo9I	GATC	3 cut(s)	214, 258, 298
LmnI	GCTCC	2 cut(s)	192, 353
LpnPI	CCDG	8 cut(s)	19, 86, 159, 174, 230, 249, 276, 278
Lsp1109I	GCAGC	2 cut(s)	95, 238
LweI	GCATC	2 cut(s)	184, 293
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	88, 106
MalI	GATC	3 cut(s)	216, 260, 300
MboI	GATC	3 cut(s)	214, 258, 298
MhlI	GDGCHC	2 cut(s)	57, 189
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	343
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	140, 205, 346
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	78, 285
MslI	CAYNNNNRTG	2 cut(s)	38, 163
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	7, 264
Mva1269I	GAATGC	2 cut(s)	29, 237
MvaI	CCWGG	2 cut(s)	7, 264
MwoI	GCNNNNNNNGC	2 cut(s)	11, 303
NdeII	GATC	3 cut(s)	214, 258, 298
NlaIII	CATG	3 cut(s)	61, 194, 231
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	106
NspI	RCATGY	1 cut(s)	231
PaeI	GCATGC	1 cut(s)	231
PagI	TCATGA	1 cut(s)	57
PasI	CCCWGGG	1 cut(s)	263
PctI	GAATGC	2 cut(s)	29, 237
PkrI	GCNGC	4 cut(s)	28, 85, 253, 308
Ple19I	CGATCG	1 cut(s)	301
PshBI	ATTAAT	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	5, 262
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	2 cut(s)	5, 262
PspN4I	GGNNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	301
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	2 cut(s)	38, 163
SaqAI	TTAA	2 cut(s)	78, 285
SatI	GCNGC	4 cut(s)	27, 84, 252, 307
Sau3AI	GATC	3 cut(s)	214, 258, 298
ScrFI	CCNGG	2 cut(s)	7, 264
SduI	GDGCHC	2 cut(s)	57, 189
SetI	ASST	6 cut(s)	11, 75, 105, 113, 357, 362
SfaNI	GCATC	2 cut(s)	184, 293
SfcI	CTRYAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	2 cut(s)	38, 163
SphI	GCATGC	1 cut(s)	231
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	6 cut(s)	26, 86, 96, 207, 280, 306
StyD4I	CCNGG	2 cut(s)	5, 262
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	301
TasI	AATT	1 cut(s)	343
TauI	GCSGC	2 cut(s)	29, 309
Tru1I	TTAA	2 cut(s)	78, 285
Tru9I	TTAA	2 cut(s)	78, 285
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	2 cut(s)	83, 251
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	309
VspI	ATTAAT	1 cut(s)	78
XceI	RCATGY	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.