Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001571

Physical Location & Seq

Genomic Coordinates Forward (+)

7582486 .. 7583848

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G106600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCTTACATACGAGCTCTTTGATGGTGATCCATATTCTAATTGTGGGACGTATGGGACTGTTAACCAAGATGATGCTAATTATTATCAAGGGCAATATTTTAAGCAAGATGTGTATGACACTGATTGTAGGAATGTAGAATATGATGAACTTTTTGCTCATGCGCTTCAAGAAGAATTATCACTACTTGCAATAGAGGAAGAGCCTGAAAAAGTGGAACATTTGCAATTATCTGTATTCCCACAAGATTGGCTGCAACAATCTGTTGGAAATTATGGCTTAACAAACAATTGGTCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

101

Amino Acids

11.75

Weight (kDa)

4.05

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03330 AT5G03330 AT5G03330 AT5G03330
fragaria_vesca	FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161
malus_domestica	MD04G1095000.v1.1 MD12G1115200.v1.1
prunus_persica	Prupe.6G106600_v2.0.a1 Prupe.6G234300_v2.0.a1
pyrus_communis	pycom04g09020 pycom12g11450
rosa_chinensis	RchiOBHm_Chr3g0470011 RchiOBHm_Chr5g0058171
rosa_laevigata	RLG00000024304 RLG00000035200
rosa_multiflora	Rmu_sc0000367.1_g000036 Rmu_sc0009972.1_g000001 Rmu_sc0017440.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022390 Rroxscaffold_3G00230070 Rroxscaffold_3G00230090 Rroxscaffold_3G00239050 Rroxscaffold_6G00411280
rosa_rugosa	Rorug03G0106100 Rorug03G0106100 Rorug03G0106100 Rorug05G0312300 Rorug05G0312400
rosa_samantha	Rh3AG155200 Rh3BG179300 Rh3CG169900 Rh3DG195800 Rh5AG380300 Rh5BG391400 Rh5CG415300 Rh5DG406100
rosa_wichuraiana	Rw3G014620 Rw5G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
Alw21I	GWGCWC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	253
ArsI	GACNNNNNNTTYG	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
BmsI	GCATC	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	27
BseJI	GATNNNNATC	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	18
BslFI	GGGAC	2 cut(s)	61, 70
BsmFI	GGGAC	2 cut(s)	61, 70
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	23
BspQI	GCTCTTC	1 cut(s)	195
BssMI	GATC	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	240
BstXI	CCANNNNNNTGG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	120
CfoI	GCGC	1 cut(s)	166
CviAII	CATG	2 cut(s)	161, 297
CviJI	RGCY	4 cut(s)	16, 205, 253, 279
CviKI_1	RGCY	4 cut(s)	16, 205, 253, 279
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	18
FaeI	CATG	2 cut(s)	164, 300
FaiI	YATR	8 cut(s)	10, 34, 54, 117, 144, 162, 276, 298
FaqI	GGGAC	2 cut(s)	61, 70
FatI	CATG	2 cut(s)	160, 296
Fnu4HI	GCNGC	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	254
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	254
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	164, 300
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HpaI	GTTAAC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	191, 226, 256
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	164, 300
HspAI	GCGC	1 cut(s)	164
KspAI	GTTAAC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	28
LguI	GCTCTTC	1 cut(s)	195
LpnPI	CCDG	1 cut(s)	219
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	1 cut(s)	64
MaeII	ACGT	1 cut(s)	50
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	2 cut(s)	185, 212
MfeI	CAATTG	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	6 cut(s)	40, 79, 176, 227, 271, 289
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	1 cut(s)	190
MseI	TTAA	3 cut(s)	63, 102, 281
MunI	CAATTG	1 cut(s)	289
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	164, 300
PciSI	GCTCTTC	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	18
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	63, 102, 281
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	2 cut(s)	18, 53
SfaNI	GCATC	1 cut(s)	64
SgeI	CNNG	9 cut(s)	25, 80, 101, 119, 173, 182, 200, 218, 257
Sse9I	AATT	6 cut(s)	40, 79, 176, 227, 271, 289
SspI	AATATT	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	53
TasI	AATT	6 cut(s)	40, 79, 176, 227, 271, 289
Tru1I	TTAA	3 cut(s)	63, 102, 281
Tru9I	TTAA	3 cut(s)	63, 102, 281
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.