Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001571

Physical Location & Seq

Genomic Coordinates Reverse (-)

23579044 .. 23583852

Gene Structure 4809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G234300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCTTCCCATGAGCATGATTCAGATATTATTCAGTGGGGTCTTCGTCTACTTGATGGTGATCCAGTTTATAATTCTTCATACTACTACGGTGACATGATACAACACAATGCTAATGATATCTACCATGAAGAGTATTTCAGAAGTCATTATGATACAGAATCAAACCATGTGGAGAATGATGAGATCATTGCACGAACTCTTCAAGAGGAATTTTCAGGACTATCTGTAACAGAAGCCTCTGAATACTCACATGCAGGAGAAGCGCAAGCACAAGCATCCGTTCTTGCAGATGAGTGGCATGGTGTATCTACAAGGAATTATTGTTCAGACCATGATTATGGCCAGGAAGAAGCTTCTAGTTTATGTTCTAGCCCTGGTAATCATTTGGAGCTAACTGATGAATGTGCACTTGATGGTGAAGTAGACTGGAGCTTGAATCCCGTTCCTCATATTCCTAGAATTAATGGAGAAATTCCTTCATTTGATGAAGCGACTTCAGATCATCAAAGGCTGCTTGACAGACTGCAGATATTTGGCTTCCTTGAACGCAAGGTTGAAGGAGATGGAAACTGCCAGTTCCATGCTTTATCAGACCAATTGTATCACACACCTGACCACCACAAGTACGTGAGAAGCCAAGTCGTAAATCAGCTGAAGTCTCATCCGGAGATTTACGAGGGATATGTTCCCATGGCATATGATGACTATTTGGAGAAGATGTCCACGAATGGTGAGTGGGGTGACCATGTTTCATTGCAGGCAGCTGCTGATTCGTATGGGGTGAAAATTTTTGTCTTGACTTCTTTTAAGGATAACTGTTGCATAGAGATTCTTCCTAATATCCAAACTTCAAAACAAGTTATTTATTTGAGTTTCTGGGCAGAGGTGCATTACAACTCAATTTATCCTCAAGGAGGTTCGCCCTCAAGTGAGTACAAAAAGAAGAAAAAGTGGCGGATATTTGGGAATAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

327

Amino Acids

37.31

Weight (kDa)

4.85

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03330 AT5G03330 AT5G03330 AT5G03330
fragaria_vesca	FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161
malus_domestica	MD04G1095000.v1.1 MD12G1115200.v1.1
prunus_persica	Prupe.6G106600_v2.0.a1 Prupe.6G234300_v2.0.a1
pyrus_communis	pycom04g09020 pycom12g11450
rosa_chinensis	RchiOBHm_Chr3g0470011 RchiOBHm_Chr5g0058171
rosa_laevigata	RLG00000024304 RLG00000035200
rosa_multiflora	Rmu_sc0000367.1_g000036 Rmu_sc0009972.1_g000001 Rmu_sc0017440.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022390 Rroxscaffold_3G00230070 Rroxscaffold_3G00230090 Rroxscaffold_3G00239050 Rroxscaffold_6G00411280
rosa_rugosa	Rorug03G0106100 Rorug03G0106100 Rorug03G0106100 Rorug05G0312300 Rorug05G0312400
rosa_samantha	Rh3AG155200 Rh3BG179300 Rh3CG169900 Rh3DG195800 Rh5AG380300 Rh5BG391400 Rh5CG415300 Rh5DG406100
rosa_wichuraiana	Rw3G014620 Rw5G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
AccI	GTMKAC	2 cut(s)	49, 426
AccIII	TCCGGA	1 cut(s)	667
AciI	CCGC	1 cut(s)	958
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	3 cut(s)	212, 474, 789
AcuI	CTGAAG	2 cut(s)	483, 677
AfaI	GTAC	2 cut(s)	629, 938
AfiI	CCNNNNNNNGG	1 cut(s)	917
AgsI	TTSAA	5 cut(s)	206, 439, 548, 560, 855
AjnI	CCWGG	2 cut(s)	345, 376
AloI	GAACNNNNNNTCC	2 cut(s)	310, 342
AluBI	AGCT	5 cut(s)	356, 394, 435, 655, 767
AluI	AGCT	5 cut(s)	356, 394, 435, 655, 767
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	666
Alw44I	GTGCAC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	56
AlwNI	CAGNNNCTG	1 cut(s)	770
Aor13HI	TCCGGA	1 cut(s)	667
AoxI	GGCC	1 cut(s)	343
ApaLI	GTGCAC	1 cut(s)	408
ApeKI	GCWGC	3 cut(s)	514, 764, 767
ApoI	RAATTY	3 cut(s)	212, 474, 789
AseI	ATTAAT	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	268
AsuHPI	GGTGA	6 cut(s)	71, 104, 431, 746, 755, 796
BaeGI	GKGCMC	1 cut(s)	412
BalI	TGGCCA	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	3 cut(s)	501, 754, 776
BccI	CCATC	3 cut(s)	50, 410, 560
BciT130I	CCWGG	2 cut(s)	347, 378
BcoDI	GTCTC	1 cut(s)	666
BfaI	CTAG	3 cut(s)	360, 372, 459
BfmI	CTRYAG	1 cut(s)	527
BisI	GCNGC	3 cut(s)	515, 765, 768
BlsI	GCNGC	3 cut(s)	516, 766, 769
Bme1390I	CCNGG	2 cut(s)	347, 378
BmrFI	CCNGG	2 cut(s)	347, 378
BmsI	GCATC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	451
BpuEI	CTTGAG	2 cut(s)	897, 913
BsaAI	YACGTR	1 cut(s)	631
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	376, 693
BsaWI	WCCGGW	1 cut(s)	667
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bsc4I	CCNNNNNNNGG	1 cut(s)	917
Bse1I	ACTGG	3 cut(s)	65, 434, 577
Bse3DI	GCAATG	2 cut(s)	189, 755
Bse8I	GATNNNNATC	1 cut(s)	60
BseAI	TCCGGA	1 cut(s)	667
BseBI	CCWGG	2 cut(s)	347, 378
BseDI	CCNNGG	2 cut(s)	376, 693
BseGI	GGATG	2 cut(s)	278, 664
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	917
BseMI	GCAATG	2 cut(s)	189, 755
BseNI	ACTGG	3 cut(s)	65, 434, 577
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	3 cut(s)	501, 754, 776
BshFI	GGCC	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	668
BslI	CCNNNNNNNGG	1 cut(s)	917
BsmAI	GTCTC	1 cut(s)	666
BsnI	GGCC	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp13I	TCCGGA	1 cut(s)	667
Bsp143I	GATC	3 cut(s)	61, 186, 502
Bsp19I	CCATGG	1 cut(s)	693
BspACI	CCGC	1 cut(s)	958
BspANI	GGCC	1 cut(s)	345
BspEI	TCCGGA	1 cut(s)	667
BspMAI	CTGCAG	1 cut(s)	531
BspPI	GGATC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	189, 755
BsrI	ACTGG	3 cut(s)	65, 434, 577
BssECI	CCNNGG	2 cut(s)	376, 693
BssMI	GATC	3 cut(s)	61, 186, 502
BssT1I	CCWWGG	1 cut(s)	693
Bst2UI	CCWGG	2 cut(s)	347, 378
Bst4CI	ACNGT	2 cut(s)	92, 821
Bst6I	CTCTTC	2 cut(s)	126, 207
BstBAI	YACGTR	1 cut(s)	631
BstC8I	GCNNGC	2 cut(s)	270, 762
BstDSI	CCRYGG	1 cut(s)	693
BstEII	GGTNACC	1 cut(s)	743
BstENI	CCTNNNNNAGG	1 cut(s)	915
BstF5I	GGATG	2 cut(s)	278, 664
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	3 cut(s)	64, 189, 505
BstMAI	GTCTC	1 cut(s)	666
BstMBI	GATC	3 cut(s)	61, 186, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	347, 378
BstNSI	RCATGY	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	743
BstSCI	CCNGG	2 cut(s)	345, 376
BstSFI	CTRYAG	1 cut(s)	527
BstSLI	GKGCMC	1 cut(s)	412
BstV1I	GCAGC	3 cut(s)	501, 754, 776
BstV2I	GAAGAC	1 cut(s)	35
BstXI	CCANNNNNNTGG	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	345
BtgI	CCRYGG	1 cut(s)	693
BtsCI	GGATG	2 cut(s)	278, 664
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	270, 762
CaiI	CAGNNNCTG	1 cut(s)	770
CfoI	GCGC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	628, 937
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviQI	GTAC	2 cut(s)	628, 937
DpnI	GATC	3 cut(s)	63, 188, 504
DpnII	GATC	3 cut(s)	61, 186, 502
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	126, 207
EarI	CTCTTC	2 cut(s)	126, 207
EciI	GGCGGA	1 cut(s)	973
Eco130I	CCWWGG	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	121
Eco57I	CTGAAG	2 cut(s)	483, 677
Eco91I	GGTNACC	1 cut(s)	743
EcoNI	CCTNNNNNAGG	1 cut(s)	915
EcoO65I	GGTNACC	1 cut(s)	743
EcoRII	CCWGG	2 cut(s)	345, 376
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	693
FauNDI	CATATG	1 cut(s)	700
FblI	GTMKAC	2 cut(s)	49, 426
Fnu4HI	GCNGC	3 cut(s)	515, 765, 768
FokI	GGATG	2 cut(s)	265, 651
Fsp4HI	GCNGC	3 cut(s)	515, 765, 768
FspBI	CTAG	3 cut(s)	360, 372, 459
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	3 cut(s)	515, 765, 768
GsuI	CTGGAG	1 cut(s)	451
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	1 cut(s)	668
HhaI	GCGC	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	5 cut(s)	20, 161, 439, 773, 832
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	6 cut(s)	71, 104, 431, 746, 755, 796
Hpy166II	GTNNAC	4 cut(s)	50, 410, 427, 726
Hpy188I	TCNGA	6 cut(s)	25, 143, 244, 331, 502, 595
Hpy188III	TCNNGA	4 cut(s)	206, 219, 668, 799
Hpy8I	GTNNAC	4 cut(s)	50, 410, 427, 726
HpyAV	CCTTC	2 cut(s)	489, 554
HpyCH4III	ACNGT	2 cut(s)	92, 821
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	8 cut(s)	194, 257, 290, 410, 529, 760, 825, 892
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	630
HspAI	GCGC	1 cut(s)	266
Kpn2I	TCCGGA	1 cut(s)	667
Kzo9I	GATC	3 cut(s)	61, 186, 502
LmnI	GCTCC	2 cut(s)	391, 432
Lsp1109I	GCAGC	3 cut(s)	501, 754, 776
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	3 cut(s)	360, 372, 459
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	3 cut(s)	92, 229, 743
MalI	GATC	3 cut(s)	63, 188, 504
MboI	GATC	3 cut(s)	61, 186, 502
MboII	GAAGA	8 cut(s)	35, 69, 143, 194, 362, 730, 827, 958
MfeI	CAATTG	1 cut(s)	599
MhlI	GDGCHC	1 cut(s)	412
MlsI	TGGCCA	1 cut(s)	345
MluCI	AATT	8 cut(s)	73, 212, 319, 462, 474, 599, 789, 903
MluNI	TGGCCA	1 cut(s)	345
MnlI	CCTC	8 cut(s)	202, 250, 459, 673, 880, 911, 921, 937
Mox20I	TGGCCA	1 cut(s)	345
MroI	TCCGGA	1 cut(s)	667
MscI	TGGCCA	1 cut(s)	345
MseI	TTAA	2 cut(s)	465, 810
MslI	CAYNNNNRTG	2 cut(s)	15, 339
Msp20I	TGGCCA	1 cut(s)	345
MspA1I	CMGCKG	2 cut(s)	655, 767
MspI	CCGG	1 cut(s)	668
MspR9I	CCNGG	2 cut(s)	347, 378
MunI	CAATTG	1 cut(s)	599
MvaI	CCWGG	2 cut(s)	347, 378
MwoI	GCNNNNNNNGC	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	693
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	3 cut(s)	61, 186, 502
NmuCI	GTSAC	2 cut(s)	92, 743
NspI	RCATGY	1 cut(s)	257
PfeI	GAWTC	5 cut(s)	20, 161, 439, 773, 832
PkrI	GCNGC	3 cut(s)	516, 766, 769
Ppu21I	YACGTR	1 cut(s)	631
PshBI	ATTAAT	1 cut(s)	465
PsiI	TTATAA	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	345, 376
PspEI	GGTNACC	1 cut(s)	743
PspGI	CCWGG	2 cut(s)	345, 376
PstI	CTGCAG	1 cut(s)	531
PstNI	CAGNNNCTG	1 cut(s)	770
PvuII	CAGCTG	2 cut(s)	655, 767
RsaI	GTAC	2 cut(s)	629, 938
RsaNI	GTAC	2 cut(s)	628, 937
RseI	CAYNNNNRTG	2 cut(s)	15, 339
SaqAI	TTAA	2 cut(s)	465, 810
SatI	GCNGC	3 cut(s)	515, 765, 768
Sau3AI	GATC	3 cut(s)	61, 186, 502
ScrFI	CCNGG	2 cut(s)	347, 378
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	1 cut(s)	287
SfcI	CTRYAG	1 cut(s)	527
SmiMI	CAYNNNNRTG	2 cut(s)	15, 339
SmlI	CTYRAG	2 cut(s)	912, 928
SmoI	CTYRAG	2 cut(s)	912, 928
Sse9I	AATT	8 cut(s)	73, 212, 319, 462, 474, 599, 789, 903
SsiI	CCGC	1 cut(s)	958
SspMI	CTAG	3 cut(s)	360, 372, 459
StyD4I	CCNGG	2 cut(s)	345, 376
StyI	CCWWGG	1 cut(s)	693
TaaI	ACNGT	2 cut(s)	92, 821
TaiI	ACGT	1 cut(s)	633
TasI	AATT	8 cut(s)	73, 212, 319, 462, 474, 599, 789, 903
TatI	WGTACW	1 cut(s)	936
TfiI	GAWTC	5 cut(s)	20, 161, 439, 773, 832
Tru1I	TTAA	2 cut(s)	465, 810
Tru9I	TTAA	2 cut(s)	465, 810
TscAI	CASTG	1 cut(s)	41
TseFI	GTSAC	2 cut(s)	92, 743
TseI	GCWGC	3 cut(s)	514, 764, 767
Tsp45I	GTSAC	2 cut(s)	92, 743
TspDTI	ATGAA	6 cut(s)	69, 144, 417, 471, 504, 744
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	1 cut(s)	41
VneI	GTGCAC	1 cut(s)	408
VspI	ATTAAT	1 cut(s)	465
XagI	CCTNNNNNAGG	1 cut(s)	915
XapI	RAATTY	3 cut(s)	212, 474, 789
XceI	RCATGY	1 cut(s)	257
XmiI	GTMKAC	2 cut(s)	49, 426
XspI	CTAG	3 cut(s)	360, 372, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.