Rh5AG380300

OTU-like cysteine protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001571
Physical Location & Seq
Reverse (-)
64883276 .. 64891143
7868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG380300.1

Sequence Viewer

Length: 1053 bp
ATGCTTACATACGAGCAAGACCCGGATGTTGTCCGCTGGGGACTCCAGCTCTTTGAAGGTGATCCGTATTCGAATTGTGGGTATTGTGACTCAGTTAACCAAGATGGCACTAATTATTATGCGGGGCATTATTTTAAGGAAGATGTGGTGTATGATGCGGATTGTCTAAATGTGGAATATGATGAACTTATTGCTCATGCTCTTCAAGAAGAGCTGTCACTACTTGATATAGAGGAGGACGAGCCGGGATCTGCGCCTCAGCAAGCAGAGCATTTGCAAGCATCTGTCTTCCCACAAGATTGGTCACAGCAATCTATTGGAAATTATGGCTCTGGACAGGAGAGTGTTCAGGCAGAGGCAGATGAAGTTGGGCCTTCTACTTCGTGTTCTAGCCCAGATGAAAAGTCGTACTATGGAGATGAGTGGTCATATTCCCTAGAGCTGGCTAATGAATATACATTTGATGGAGAGAGGTTGAACCAGATGGTTCCTGTCCCTCATGTTCCTAAAATTAATGGTGATATACCCTCGCTAGATCAAGCAACTTTAGATCACCAAAGGCTTCTGGACAGGTTGCAGTTATATGGGTTGGTTGAAAATAAGGTCCAAGGAGATGGAAACTGTCAGTTCCGCGCTCTAGCTGACCAATTTTATCAATCTCCTGAACACCACGAATTTGTGAGACAGCAAATTGTAAATCAGCTCAAGTCATACCCAGAGATATATGAAGGATATGTTCCCATGGCTTATGATGACTATTTGGAGAAGATGTCCAGGAGCGGTGAGTGGGGCGATCATGTTACTCTACAGGCTGCTGCAGATTTGTATGGAGTTAAAATTTTTGTCATAACATCTTTCAAGGACACCTGCTACATTGAGATTCTTCCTAATGCTGAAAGATCGAAACGAGTAATTTGTTTGAGCTTTTGGGCAGAGGTGCACTACAACTCAATTTATTCTGAAGGAGATTTGCCTACATTTGAGACGAAGAAGAAGAAGAAAAGGGGGATGTCACGTAATAAGCACTTGGAGTCCCCAAATAAATACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

350

Amino Acids

40.07

Weight (kDa)

4.47

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 203 - 309 1.2e-10 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 875
Acc36I ACCTGC 1 cut(s) 875
AccBSI CCGCTC 1 cut(s) 780
AccII CGCG 1 cut(s) 633
AciI CCGC 5 cut(s) 34, 122, 158, 631, 780
AclWI GGATC 2 cut(s) 56, 256
AcsI RAATTY 2 cut(s) 674, 837
AcuI CTGAAG 1 cut(s) 981
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 5 cut(s) 56, 206, 478, 596, 859
AjnI CCWGG 1 cut(s) 773
AluBI AGCT 6 cut(s) 49, 214, 442, 641, 703, 924
AluI AGCT 6 cut(s) 49, 214, 442, 641, 703, 924
Alw21I GWGCWC 1 cut(s) 942
Alw26I GTCTC 2 cut(s) 676, 977
Alw44I GTGCAC 1 cut(s) 938
AlwI GGATC 2 cut(s) 56, 256
AoxI GGCC 1 cut(s) 371
ApaLI GTGCAC 1 cut(s) 938
ApeKI GCWGC 2 cut(s) 812, 815
ApoI RAATTY 2 cut(s) 674, 837
AseI ATTAAT 1 cut(s) 513
AspLEI GCGC 2 cut(s) 256, 635
AspS9I GGNCC 2 cut(s) 371, 604
AsuC2I CCSGG 2 cut(s) 23, 246
AsuHPI GGTGA 4 cut(s) 71, 530, 545, 794
AsuII TTCGAA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 604
BaeGI GKGCMC 1 cut(s) 942
BbsI GAAGAC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 942
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 799, 802
BccI CCATC 4 cut(s) 98, 458, 478, 608
BciT130I CCWGG 1 cut(s) 775
BcnI CCSGG 2 cut(s) 23, 246
BcoDI GTCTC 2 cut(s) 676, 977
BfaI CTAG 4 cut(s) 390, 437, 533, 638
BfmI CTRYAG 2 cut(s) 806, 816
BfuAI ACCTGC 1 cut(s) 875
BisI GCNGC 2 cut(s) 813, 816
BlsI GCNGC 2 cut(s) 814, 817
Bme1390I CCNGG 3 cut(s) 23, 246, 775
Bme18I GGWCC 1 cut(s) 604
BmgT120I GGNCC 2 cut(s) 371, 604
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 3 cut(s) 23, 246, 775
BmsI GCATC 2 cut(s) 145, 290
BpiI GAAGAC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 2 cut(s) 23, 246
BsaAI YACGTR 1 cut(s) 1016
BsaJI CCNNGG 2 cut(s) 607, 741
BsaXI ACNNNNNCTCC 2 cut(s) 755, 785
Bsc4I CCNNNNNNNGG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 775
BseDI CCNNGG 2 cut(s) 607, 741
BseGI GGATG 2 cut(s) 31, 1014
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMII CTCAG 2 cut(s) 105, 272
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 942
BseXI GCAGC 2 cut(s) 799, 802
BseYI CCCAGC 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 633
BshFI GGCC 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 942
BsiSI CCGG 2 cut(s) 23, 245
BslFI GGGAC 3 cut(s) 54, 479, 1018
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 2 cut(s) 676, 977
BsmBI CGTCTC 1 cut(s) 977
BsmFI GGGAC 3 cut(s) 54, 479, 1018
BsnI GGCC 1 cut(s) 373
Bsp119I TTCGAA 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 942
Bsp143I GATC 6 cut(s) 61, 248, 535, 550, 793, 899
Bsp19I CCATGG 1 cut(s) 741
BspACI CCGC 5 cut(s) 34, 122, 158, 631, 780
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 2 cut(s) 104, 271
BspFNI CGCG 1 cut(s) 633
BspLI GGNNCC 1 cut(s) 489
BspMAI CTGCAG 1 cut(s) 820
BspMI ACCTGC 1 cut(s) 875
BspPI GGATC 2 cut(s) 56, 256
BspQI GCTCTTC 2 cut(s) 204, 207
BspT104I TTCGAA 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 780
BssECI CCNNGG 2 cut(s) 607, 741
BssMI GATC 6 cut(s) 61, 248, 535, 550, 793, 899
BssT1I CCWWGG 2 cut(s) 607, 741
Bst2UI CCWGG 1 cut(s) 775
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 2 cut(s) 204, 207
BstBAI YACGTR 1 cut(s) 1016
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 3 cut(s) 264, 279, 444
BstDEI CTNAG 2 cut(s) 91, 258
BstDSI CCRYGG 1 cut(s) 741
BstF5I GGATG 2 cut(s) 31, 1014
BstFNI CGCG 1 cut(s) 633
BstHHI GCGC 2 cut(s) 256, 635
BstKTI GATC 6 cut(s) 64, 251, 538, 553, 796, 902
BstMAI GTCTC 2 cut(s) 676, 977
BstMBI GATC 6 cut(s) 61, 248, 535, 550, 793, 899
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 775
BstSCI CCNGG 3 cut(s) 21, 244, 773
BstSFI CTRYAG 2 cut(s) 806, 816
BstSLI GKGCMC 1 cut(s) 942
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 2 cut(s) 799, 802
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 2 cut(s) 300, 614
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 1 cut(s) 373
BtgI CCRYGG 1 cut(s) 741
BtsCI GGATG 2 cut(s) 31, 1014
BveI ACCTGC 1 cut(s) 875
Cac8I GCNNGC 3 cut(s) 264, 279, 444
CfoI GCGC 2 cut(s) 256, 635
Cfr13I GGNCC 2 cut(s) 371, 604
Csp6I GTAC 1 cut(s) 409
CviAII CATG 4 cut(s) 197, 500, 742, 797
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 2 cut(s) 91, 258
DpnI GATC 6 cut(s) 63, 250, 537, 552, 795, 901
DpnII GATC 6 cut(s) 61, 248, 535, 550, 793, 899
Eam1104I CTCTTC 2 cut(s) 204, 207
EarI CTCTTC 2 cut(s) 204, 207
Eco130I CCWWGG 2 cut(s) 607, 741
Eco47I GGWCC 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 981
EcoRII CCWGG 1 cut(s) 773
EcoT14I CCWWGG 2 cut(s) 607, 741
ErhI CCWWGG 2 cut(s) 607, 741
Esp3I CGTCTC 1 cut(s) 977
FaeI CATG 4 cut(s) 200, 503, 745, 800
FaqI GGGAC 3 cut(s) 54, 479, 1018
FatI CATG 4 cut(s) 196, 499, 741, 796
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 813, 816
FokI GGATG 2 cut(s) 38, 1021
Fsp4HI GCNGC 2 cut(s) 813, 816
FspBI CTAG 4 cut(s) 390, 437, 533, 638
GlaI GCGC 2 cut(s) 255, 634
GluI GCNGC 2 cut(s) 813, 816
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 373
HapII CCGG 2 cut(s) 23, 245
HhaI GCGC 2 cut(s) 256, 635
Hin1II CATG 4 cut(s) 200, 503, 745, 800
Hin6I GCGC 2 cut(s) 254, 633
HinP1I GCGC 2 cut(s) 254, 633
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 4 cut(s) 42, 89, 880, 1031
HpaI GTTAAC 1 cut(s) 97
HpaII CCGG 2 cut(s) 23, 245
HphI GGTGA 4 cut(s) 71, 530, 545, 794
Hpy166II GTNNAC 2 cut(s) 97, 940
Hpy188I TCNGA 1 cut(s) 961
Hpy188III TCNNGA 4 cut(s) 206, 333, 566, 662
Hpy8I GTNNAC 2 cut(s) 97, 940
HpyAV CCTTC 4 cut(s) 50, 384, 722, 956
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 1 cut(s) 1015
HpyCH4V TGCA 4 cut(s) 277, 577, 818, 940
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 2 cut(s) 91, 258
HpySE526I ACGT 1 cut(s) 1015
Hsp92II CATG 4 cut(s) 200, 503, 745, 800
HspAI GCGC 2 cut(s) 254, 633
KspAI GTTAAC 1 cut(s) 97
Kzo9I GATC 6 cut(s) 61, 248, 535, 550, 793, 899
LguI GCTCTTC 2 cut(s) 204, 207
LmnI GCTCC 1 cut(s) 777
Lsp1109I GCAGC 2 cut(s) 799, 802
LweI GCATC 2 cut(s) 145, 290
MaeI CTAG 4 cut(s) 390, 437, 533, 638
MaeII ACGT 1 cut(s) 1015
MaeIII GTNAC 5 cut(s) 86, 216, 303, 799, 1011
MalI GATC 6 cut(s) 63, 250, 537, 552, 795, 901
MbiI CCGCTC 1 cut(s) 780
MboI GATC 6 cut(s) 61, 248, 535, 550, 793, 899
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 1 cut(s) 942
MlyI GAGTC 3 cut(s) 36, 83, 1040
MnlI CCTC 8 cut(s) 226, 229, 267, 349, 465, 507, 538, 928
MseI TTAA 4 cut(s) 96, 135, 513, 834
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 2 cut(s) 23, 245
MspR9I CCNGG 3 cut(s) 23, 246, 775
MvaI CCWGG 1 cut(s) 775
MvnI CGCG 1 cut(s) 633
MwoI GCNNNNNNNGC 1 cut(s) 268
NciI CCSGG 2 cut(s) 23, 246
NcoI CCATGG 1 cut(s) 741
NdeII GATC 6 cut(s) 61, 248, 535, 550, 793, 899
NlaIII CATG 4 cut(s) 200, 503, 745, 800
NlaIV GGNNCC 1 cut(s) 489
NmuCI GTSAC 4 cut(s) 86, 216, 303, 1011
NspV TTCGAA 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 875
PciSI GCTCTTC 2 cut(s) 204, 207
PfeI GAWTC 1 cut(s) 880
PfoI TCCNGGA 1 cut(s) 773
PkrI GCNGC 2 cut(s) 814, 817
PleI GAGTC 3 cut(s) 36, 83, 1039
PpsI GAGTC 3 cut(s) 36, 83, 1039
Ppu21I YACGTR 1 cut(s) 1016
PshBI ATTAAT 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 773
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 1 cut(s) 773
PspN4I GGNNCC 1 cut(s) 489
PspPI GGNCC 2 cut(s) 371, 604
PstI CTGCAG 1 cut(s) 820
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
SapI GCTCTTC 2 cut(s) 204, 207
SaqAI TTAA 4 cut(s) 96, 135, 513, 834
SatI GCNGC 2 cut(s) 813, 816
Sau3AI GATC 6 cut(s) 61, 248, 535, 550, 793, 899
Sau96I GGNCC 2 cut(s) 371, 604
SchI GAGTC 3 cut(s) 36, 83, 1040
ScrFI CCNGG 3 cut(s) 23, 246, 775
SduI GDGCHC 1 cut(s) 942
SfaNI GCATC 2 cut(s) 145, 290
SfcI CTRYAG 2 cut(s) 806, 816
SfuI TTCGAA 1 cut(s) 71
SinI GGWCC 1 cut(s) 604
SmlI CTYRAG 1 cut(s) 704
SmoI CTYRAG 1 cut(s) 704
SsiI CCGC 5 cut(s) 34, 122, 158, 631, 780
SspMI CTAG 4 cut(s) 390, 437, 533, 638
StyD4I CCNGG 3 cut(s) 21, 244, 773
StyI CCWWGG 2 cut(s) 607, 741
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 1 cut(s) 1018
TaqI TCGA 2 cut(s) 71, 902
TfiI GAWTC 1 cut(s) 880
Tru1I TTAA 4 cut(s) 96, 135, 513, 834
Tru9I TTAA 4 cut(s) 96, 135, 513, 834
TseFI GTSAC 4 cut(s) 86, 216, 303, 1011
TseI GCWGC 2 cut(s) 812, 815
Tsp45I GTSAC 4 cut(s) 86, 216, 303, 1011
TspDTI ATGAA 5 cut(s) 198, 378, 414, 465, 741
TspGWI ACGGA 1 cut(s) 54
VneI GTGCAC 1 cut(s) 938
VpaK11BI GGWCC 1 cut(s) 604
VspI ATTAAT 1 cut(s) 513
XapI RAATTY 2 cut(s) 674, 837
XspI CTAG 4 cut(s) 390, 437, 533, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.