RLG00000024304

OTU-like cysteine protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001571
Physical Location & Seq
Reverse (-)
34294130 .. 34295902
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024304

Sequence Viewer

Length: 708 bp
ATGGCTGGCCAAGAGCATGAGTCTGGTATTATGCAGTGGGCTCTTAGTCTACTTGATGGTGATCCAGCTTATAATACTGTCTATTATGGTGACATGATGCAACACGATGCTAATGACATCTACCCCAGACAATATATTAGAGGTCAATGTGAAGCCTCTGGATGCTCACATGGAGATGAAGAGCAATCACAAGCATCTACTCATGCAGATGATTGGTATAGTTTGTCTAGAAGGAACTATTGTTCAGACAGTGATTATCCAAATGAAGGAGCATGCACAGTGGTGCCTTCTAGTTCATGTTCTAGCCCAGGTCATTTGGAGTTAACTGATGAGTGTGCAGTTGACGGTGAAGTAGACTGGAGGATGCCCGTTCCTCATATTCCTAGAATTAATGGAGAAATTCCTTCAATTGATGAAGCTACTTCAGATCATCAGAGGCTGCTTGACAGACTGCAATTATATGGCCTCGTGGAGCGTAAGGTTCAAGGAGATGGTAACTGTCAGTTTAGTGCTTTATCAGACCAACTGTATCACTTACCAGACCACCACCATGATGTGAGAAGGAAAGTCGTAAATCAGCTTAAGTCTCACCCAGAAATTTACGAGGGATATGTTCCTATGGCATACGATGACTATTTGGAGAAGATGTCAAAGAGTGGCGAGTGGGGTGATCATGTTACATTGCAGGCTGCTGCTGATTCGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

236

Amino Acids

26.42

Weight (kDa)

4.62

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 162 - 233 3.5e-09 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 283
AccI GTMKAC 2 cut(s) 49, 354
AclWI GGATC 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 2 cut(s) 399, 597
AcuI CTGAAG 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 266
AflII CTTAAG 1 cut(s) 581
AgsI TTSAA 2 cut(s) 408, 485
AjnI CCWGG 1 cut(s) 307
AleI CACNNNNGTG 1 cut(s) 281
AloI GAACNNNNNNTCC 2 cut(s) 226, 258
AluBI AGCT 3 cut(s) 68, 419, 580
AluI AGCT 3 cut(s) 68, 419, 580
Alw26I GTCTC 1 cut(s) 591
AlwI GGATC 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 439
AoxI GGCC 2 cut(s) 7, 463
ApeKI GCWGC 3 cut(s) 439, 689, 692
ApoI RAATTY 2 cut(s) 399, 597
AseI ATTAAT 1 cut(s) 390
AsuHPI GGTGA 5 cut(s) 71, 101, 359, 581, 680
BalI TGGCCA 1 cut(s) 9
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 43
BauI CACGAG 1 cut(s) 467
BbvI GCAGC 3 cut(s) 426, 676, 679
BccI CCATC 2 cut(s) 50, 485
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 670
BcoDI GTCTC 1 cut(s) 591
BfaI CTAG 4 cut(s) 228, 291, 303, 384
BfrI CTTAAG 1 cut(s) 581
BisI GCNGC 3 cut(s) 440, 690, 693
BlsI GCNGC 3 cut(s) 441, 691, 694
Bme1390I CCNGG 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 5 cut(s) 87, 97, 152, 203, 354
BpmI CTGGAG 1 cut(s) 379
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 680
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 2 cut(s) 167, 369
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMI GCAATG 1 cut(s) 680
BseNI ACTGG 1 cut(s) 362
BseXI GCAGC 3 cut(s) 426, 676, 679
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 2 cut(s) 9, 465
BshNI GGYRCC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 591
BsnI GGCC 2 cut(s) 9, 465
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 3 cut(s) 61, 427, 670
BspANI GGCC 2 cut(s) 9, 465
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 1 cut(s) 56
BspQI GCTCTTC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 283
BspTI CTTAAG 1 cut(s) 581
BsrDI GCAATG 1 cut(s) 680
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 3 cut(s) 61, 427, 670
BssSI CACGAG 1 cut(s) 467
Bst2BI CACGAG 1 cut(s) 467
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 6 cut(s) 79, 251, 280, 347, 500, 528
Bst6I CTCTTC 1 cut(s) 174
BstAFI CTTAAG 1 cut(s) 581
BstC8I GCNNGC 3 cut(s) 7, 274, 687
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 2 cut(s) 167, 369
BstKTI GATC 3 cut(s) 64, 430, 673
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 3 cut(s) 61, 427, 670
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 307
BstV1I GCAGC 3 cut(s) 426, 676, 679
BsuRI GGCC 2 cut(s) 9, 465
BtsCI GGATG 2 cut(s) 167, 369
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 3 cut(s) 41, 256, 285
Cac8I GCNNGC 3 cut(s) 7, 274, 687
CaiI CAGNNNCTG 1 cut(s) 439
CviAII CATG 8 cut(s) 17, 94, 170, 203, 273, 297, 551, 674
DdeI CTNAG 1 cut(s) 44
DpnI GATC 3 cut(s) 63, 429, 672
DpnII GATC 3 cut(s) 61, 427, 670
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 43
FaeI CATG 8 cut(s) 20, 97, 173, 206, 276, 300, 554, 677
FatI CATG 8 cut(s) 16, 93, 169, 202, 272, 296, 550, 673
FbaI TGATCA 1 cut(s) 670
FblI GTMKAC 2 cut(s) 49, 354
Fnu4HI GCNGC 3 cut(s) 440, 690, 693
FokI GGATG 2 cut(s) 174, 376
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 3 cut(s) 440, 690, 693
FspBI CTAG 4 cut(s) 228, 291, 303, 384
GluI GCNGC 3 cut(s) 440, 690, 693
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 2 cut(s) 9, 465
Hin1II CATG 8 cut(s) 20, 97, 173, 206, 276, 300, 554, 677
HincII GTYRAC 2 cut(s) 324, 343
HindII GTYRAC 2 cut(s) 324, 343
HinfI GANTC 2 cut(s) 20, 698
HpaI GTTAAC 1 cut(s) 324
HphI GGTGA 5 cut(s) 71, 101, 359, 581, 680
Hpy166II GTNNAC 4 cut(s) 50, 324, 343, 355
Hpy188I TCNGA 4 cut(s) 247, 427, 435, 520
Hpy188III TCNNGA 2 cut(s) 159, 228
Hpy8I GTNNAC 4 cut(s) 50, 324, 343, 355
HpyAV CCTTC 5 cut(s) 225, 260, 297, 414, 555
HpyCH4III ACNGT 6 cut(s) 79, 251, 280, 347, 500, 528
HpyCH4V TGCA 7 cut(s) 34, 100, 206, 276, 338, 454, 685
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 8 cut(s) 20, 97, 173, 206, 276, 300, 554, 677
Ksp22I TGATCA 1 cut(s) 670
KspAI GTTAAC 1 cut(s) 324
Kzo9I GATC 3 cut(s) 61, 427, 670
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 269, 472
Lsp1109I GCAGC 3 cut(s) 426, 676, 679
LweI GCATC 5 cut(s) 87, 97, 152, 203, 354
MaeI CTAG 4 cut(s) 228, 291, 303, 384
MaeIII GTNAC 3 cut(s) 89, 494, 676
MalI GATC 3 cut(s) 63, 429, 672
MboI GATC 3 cut(s) 61, 427, 670
MboII GAAGA 2 cut(s) 191, 655
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 9
MluCI AATT 5 cut(s) 387, 399, 408, 455, 597
MluNI TGGCCA 1 cut(s) 9
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 7 cut(s) 134, 166, 354, 384, 429, 476, 598
Mox20I TGGCCA 1 cut(s) 9
MscI TGGCCA 1 cut(s) 9
MseI TTAA 3 cut(s) 323, 390, 582
MslI CAYNNNNRTG 5 cut(s) 174, 207, 281, 549, 552
Msp20I TGGCCA 1 cut(s) 9
MspCI CTTAAG 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 309
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 309
NdeII GATC 3 cut(s) 61, 427, 670
NlaIII CATG 8 cut(s) 20, 97, 173, 206, 276, 300, 554, 677
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 89
NspI RCATGY 1 cut(s) 276
OliI CACNNNNGTG 1 cut(s) 281
PaeI GCATGC 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 698
PkrI GCNGC 3 cut(s) 441, 691, 694
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 390
PsiI TTATAA 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 439
RseI CAYNNNNRTG 5 cut(s) 174, 207, 281, 549, 552
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 3 cut(s) 323, 390, 582
SatI GCNGC 3 cut(s) 440, 690, 693
Sau3AI GATC 3 cut(s) 61, 427, 670
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 43
SetI ASST 6 cut(s) 70, 145, 313, 421, 483, 582
SfaNI GCATC 5 cut(s) 87, 97, 152, 203, 354
SmiMI CAYNNNNRTG 5 cut(s) 174, 207, 281, 549, 552
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
SphI GCATGC 1 cut(s) 276
Sse9I AATT 5 cut(s) 387, 399, 408, 455, 597
SspMI CTAG 4 cut(s) 228, 291, 303, 384
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 6 cut(s) 79, 251, 280, 347, 500, 528
TasI AATT 5 cut(s) 387, 399, 408, 455, 597
TfiI GAWTC 1 cut(s) 698
Tru1I TTAA 3 cut(s) 323, 390, 582
Tru9I TTAA 3 cut(s) 323, 390, 582
TscAI CASTG 3 cut(s) 41, 256, 285
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 3 cut(s) 439, 689, 692
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 4 cut(s) 192, 279, 285, 429
TspRI CASTG 3 cut(s) 41, 256, 285
Vha464I CTTAAG 1 cut(s) 581
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 2 cut(s) 399, 597
XbaI TCTAGA 1 cut(s) 227
XceI RCATGY 1 cut(s) 276
XmiI GTMKAC 2 cut(s) 49, 354
XspI CTAG 4 cut(s) 228, 291, 303, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.